Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001527 Sechium edule HOM05D003739 ORTHO05D003996 0.0e+00 1427.9 733 100.0
ClCG01G008230 Citrullus lanatus HOM05D003739 ORTHO05D003996 3.2e-285 984.9 775 73.2
CsaV3_5G020720 Cucumis sativus L. HOM05D003739 ORTHO05D003996 1.6e-271 939.5 775 68.9
Sed0009728 Sechium edule HOM05D003739 ORTHO05D003996 6.3e-180 635.2 533 69.4
MELO3C005063.2 Cucumis melo HOM05D003739 ORTHO05D003996 1.1e-126 458.4 393 66.9
QL11p044151 Quercus lobata HOM05D003739 ORTHO05D003996 7.1e-91 339.3 775 37.8
CiPaw.06G133400 Carya illinoinensis HOM05D003739 ORTHO05D003996 2.4e-86 324.3 811 36.7
CiPaw.10G121500 Carya illinoinensis HOM05D003739 ORTHO05D003996 1.5e-85 321.6 775 37.5
Cfa005045 Carpinus fangiana HOM05D003739 ORTHO05D003996 4.9e-84 316.6 790 35.1
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 4.2e-83 313.5 792 34.7
Ciclev10027900m.g Citrus clementina HOM05D003739 ORTHO05D003996 2.5e-72 277.7 769 34.9
GSVIVG01023816001 Vitis vinifera HOM05D003739 ORTHO05D003996 4.8e-71 273.5 784 34.6
CSS0038123 Camellia sinensis var. sinensis HOM05D003739 ORTHO05D003996 1.1e-70 272.3 788 33.8
TAR628G0054 Trochodendron aralioides HOM05D003739 ORTHO05D003996 2.0e-69 268.1 841 34.0
Gorai.006G107300 Gossypium raimondii HOM05D003739 ORTHO05D003996 8.5e-68 262.7 627 36.0
Gohir.D09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 2.7e-66 257.7 623 34.8
Thecc.08G060300 Theobroma cacao HOM05D003739 ORTHO05D003996 2.7e-66 257.7 806 32.4
TWI79G1707 Tripterygium wilfordii HOM05D003739 ORTHO05D003996 9.7e-64 249.2 785 32.4
Atru.chr12.1298 Acer truncatum HOM05D003739 ORTHO05D003996 1.3e-63 248.8 613 35.7
Oeu005537.3 Olea europaea HOM05D003739 ORTHO05D003996 2.2e-63 248.1 778 32.3
Nn4g24182 Nelumbo nucifera HOM05D003739 ORTHO05D003996 4.8e-63 246.9 798 31.2
Duzib187G1144 Durio zibethinus HOM05D003739 ORTHO05D003996 3.1e-62 244.2 665 34.1
CANSAT11G0250 Cannabis sativa HOM05D003739 ORTHO05D003996 9.1e-62 242.7 608 35.9
MD10G1070200 Malus domestica HOM05D003739 ORTHO05D003996 1.2e-61 242.3 697 35.2
CANSAT54G2857 Cannabis sativa HOM05D003739 ORTHO05D003996 3.4e-61 240.7 789 31.6
Cc09_g05210 Coffea canephora HOM05D003739 ORTHO05D003996 2.2e-60 238.0 793 32.7
MSTRG.9105 Avicennia marina HOM05D003739 ORTHO05D003996 3.8e-60 237.3 536 38.8
Prupe.8G091800 Prunus persica HOM05D003739 ORTHO05D003996 7.2e-59 233.0 786 31.7
RcHm_v2.0_Chr6g0265811 Rosa chinensis HOM05D003739 ORTHO05D003996 1.0e-57 229.2 787 31.6
Potri.010G019600 Populus trichocarpa HOM05D003739 ORTHO05D003996 1.1e-56 225.7 770 30.9
COL.COLO4_32233 Corchorus olitorius HOM05D003739 ORTHO05D003996 1.5e-56 225.3 657 32.1
arahy.Tifrunner.gnm1.ann1.H3NIN5 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.4e-56 223.0 426 39.0
Manes.11G084700 Manihot esculenta HOM05D003739 ORTHO05D003996 2.2e-55 221.5 764 31.0
RcHm_v2.0_Chr5g0054461 Rosa chinensis HOM05D003739 ORTHO05D003996 4.8e-55 220.3 723 30.7
Atru.chr5.3065 Acer truncatum HOM05D003739 ORTHO05D003996 8.2e-55 219.5 356 45.2
Lalb_Chr11g0068001 Lupinus albus HOM05D003739 ORTHO05D003996 4.1e-54 217.2 444 39.0
Sabra10G0016300 Salix brachista HOM05D003739 ORTHO05D003996 4.1e-54 217.2 441 38.1
Sopen02g026250 Solanum pennellii HOM05D003739 ORTHO05D003996 4.5e-53 213.8 766 29.5
CAN.G809.70 Capsicum annuum HOM05D003739 ORTHO05D003996 5.9e-53 213.4 520 36.3
Nitab4.5_0006794g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 5.5e-51 206.8 270 47.8
FvH4_2g09520 Fragaria vesca HOM05D003739 ORTHO05D003996 2.1e-50 204.9 781 30.3
Nitab4.5_0010401g0020 Nicotiana tabacum HOM05D003739 ORTHO05D003996 2.7e-50 204.5 698 29.5
Glyma.01G228200 Glycine max HOM05D003739 ORTHO05D003996 1.2e-48 199.1 780 31.0
PGSC0003DMG402017733 Solanum tuberosum HOM05D003739 ORTHO05D003996 3.3e-48 197.6 764 28.9
FAN27G2905 Fragaria x ananassa HOM05D003739 ORTHO05D003996 4.4e-48 197.2 790 29.4
FAN24G2517 Fragaria x ananassa HOM05D003739 ORTHO05D003996 5.7e-48 196.8 786 29.8
arahy.Tifrunner.gnm1.ann1.TF9NF6 Arachis hypogaea HOM05D003739 ORTHO05D003996 7.5e-48 196.4 436 36.7
Gohir.A09G091100 Gossypium hirsutum HOM05D003739 ORTHO05D003996 1.3e-47 195.7 621 31.7
Actinidia35828 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.1e-46 192.6 816 30.1
Glyma.11G010900 Glycine max HOM05D003739 ORTHO05D003996 3.1e-46 191.0 786 28.8
PSO339G5323 Papaver somniferum HOM05D003739 ORTHO05D003996 3.1e-46 191.0 799 29.9
PGR042G2822 Punica granatum HOM05D003739 ORTHO05D003996 4.1e-46 190.7 804 30.1
LjContig00222g0016564 Lotus japonicus HOM05D003739 ORTHO05D003996 1.2e-45 189.1 835 29.2
FAN15G1163 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-45 188.7 752 30.1
Peaxi162Scf00048g01417 Petunia axillaris HOM05D003739 ORTHO05D003996 3.5e-45 187.6 767 28.6
Migut.F00900 Erythranthe guttata HOM05D003739 ORTHO05D003996 7.7e-45 186.4 631 33.0
PSO063G1830 Papaver somniferum HOM05D003739 ORTHO05D003996 1.3e-44 185.7 382 37.2
ECA234G4722 Erigeron canadensis HOM05D003739 ORTHO05D003996 1.7e-44 185.3 406 38.2
Eucgr.A01623 Eucalyptus grandis HOM05D003739 ORTHO05D003996 1.7e-44 185.3 787 29.9
Nitab4.5_0004903g0060 Nicotiana tabacum HOM05D003739 ORTHO05D003996 3.8e-44 184.1 259 45.6
SGA_v2.0_scaffold62G21539 Striga asiatica HOM05D003739 ORTHO05D003996 3.8e-44 184.1 648 30.2
VMungo1215G1752 Vigna mungo HOM05D003739 ORTHO05D003996 1.5e-43 182.2 266 45.1
Cpa.g.sc14.123 Carica papaya HOM05D003739 ORTHO05D003996 4.7e-42 177.2 644 30.7
MBI16_g35489_MAGBIO Magnolia biondii HOM05D033968 ORTHO05D003996 4.7e-42 177.2 380 37.6
Lj8C306T17 Lonicera japonica HOM05D003739 ORTHO05D003996 1.4e-41 175.6 691 29.5
CDE06G1699 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 6.8e-41 173.3 411 34.8
unitig_46.g18632 Utricularia gibba HOM05D003739 ORTHO05D003996 1.7e-39 168.7 323 36.5
AUR62028080 Chenopodium quinoa HOM05D003739 ORTHO05D003996 2.2e-39 168.3 754 29.0
Aqoxy2G03991 Aquilegia oxysepala HOM05D003739 ORTHO05D003996 3.7e-39 167.5 802 30.3
Lj6g0022884 Lotus japonicus HOM05D003739 ORTHO05D003996 8.3e-39 166.4 179 55.3
Medtr8g091830 Medicago truncatula HOM05D003739 ORTHO05D003996 2.4e-38 164.9 273 42.1
Hund09717 Selenicereus undatus HOM05D003739 ORTHO05D003996 3.1e-38 164.5 784 27.8
PSO675G5166 Papaver somniferum HOM05D003739 ORTHO05D003996 7.0e-38 163.3 382 37.4
PSO541G6540 Papaver somniferum HOM05D003739 ORTHO05D003996 4.5e-37 160.6 300 38.7
Dinv05659 Davidia involucrata HOM05D003739 ORTHO05D003996 1.0e-36 159.5 165 59.4
Phvul.002G039700 Phaseolus vulgaris HOM05D003739 ORTHO05D003996 2.9e-36 157.9 752 27.7
ATR0564G411 Amborella trichopoda HOM05D003739 ORTHO05D003996 6.6e-36 156.8 286 38.8
TPR.G2246 Trifolium pratense HOM05D003739 ORTHO05D003996 1.1e-35 156.0 814 26.2
SalBow6G4317 Salvia bowleyana HOM05D003739 ORTHO05D003996 1.9e-35 155.2 209 46.4
vmacro15435 Vaccinium macrocarpon HOM05D003739 ORTHO05D003996 1.9e-35 155.2 803 28.5
Lsat_1_v5_gn_5_112881 Lactuca sativa HOM05D003739 ORTHO05D003996 4.2e-35 154.1 361 36.8
FvH4_2g03400 Fragaria vesca HOM05D003739 ORTHO05D003996 5.5e-35 153.7 426 35.4
HanXRQChr10g0289001 Helianthus annuus HOM05D003739 ORTHO05D003996 9.5e-35 152.9 372 36.6
Psat7g051640 Pisum sativum HOM05D003739 ORTHO05D003996 9.5e-35 152.9 265 38.9
AL7G11100 Arabidopsis lyrata HOM05D003739 ORTHO05D003996 4.7e-34 150.6 309 36.9
TAR376G0790 Trochodendron aralioides HOM05D003739 ORTHO05D003996 8.0e-34 149.8 397 35.0
AT4G39160 Arabidopsis thaliana HOM05D003739 ORTHO05D003996 1.8e-33 148.7 273 38.1
Hund09716 Selenicereus undatus HOM05D003739 ORTHO05D003996 1.8e-33 148.7 732 26.9
FAN24G0708 Fragaria x ananassa HOM05D003739 ORTHO05D003996 3.0e-33 147.9 504 31.3
AUR62005990 Chenopodium quinoa HOM05D003739 ORTHO05D003996 4.0e-33 147.5 745 27.9
Ca_17694_v3 Cicer arietinum L. HOM05D003739 ORTHO05D003996 1.7e-31 142.1 471 30.8
Aa31LG6G16100 Aethionema arabicum HOM05D003739 ORTHO05D003996 3.7e-31 141.0 317 35.6
DCAR_004344 Daucus carota HOM05D003739 ORTHO05D003996 3.7e-31 141.0 770 27.0
THA.LOC104800691 Tarenaya hassleriana HOM05D003739 ORTHO05D003996 1.6e-29 135.6 763 25.6
BraA08t34331Z Brassica rapa HOM05D003739 ORTHO05D003996 1.0e-28 132.9 284 35.6
Hma1.2p1_1073F.1_g254250 Hydrangea macrophylla HOM05D003739 ORTHO05D003996 1.7e-28 132.1 135 51.9
BcaB03g12246 Brassica carinata HOM05D003739 ORTHO05D003996 2.9e-28 131.3 271 35.1
A08p23790 Brassica napus HOM05D003739 ORTHO05D003996 6.6e-28 130.2 282 34.0
HPP92_028201 Vanilla planifolia HOM05D003739 ORTHO05D003996 6.6e-28 130.2 396 31.3
Sp3g07810 Schrenkiella parvula HOM05D003739 ORTHO05D000043 8.6e-28 129.8 311 34.1
BcaNung03888 Brassica carinata HOM05D003739 ORTHO05D003996 1.5e-27 129.0 324 35.5
A06p48670 Brassica napus HOM05D003739 ORTHO05D003996 1.5e-27 129.0 268 37.3
C03p77640 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-27 128.3 284 35.6
BolC3t20021H Brassica oleracea HOM05D003739 ORTHO05D003996 2.5e-27 128.3 284 35.6
BolC7t46745H Brassica oleracea HOM05D003739 ORTHO05D003996 7.3e-27 126.7 449 30.1
CARHR247590 Cardamine hirsuta HOM05D003739 ORTHO05D003996 9.5e-27 126.3 296 32.8
FAN27G3438 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.6e-26 125.6 509 30.3
Medtr4g067250 Medicago truncatula HOM05D003739 ORTHO05D003996 1.6e-26 125.6 249 35.7
TPR.G2191 Trifolium pratense HOM05D003739 ORTHO05D003996 2.1e-26 125.2 168 47.6
CARHR106820 Cardamine hirsuta HOM05D003739 ORTHO05D003996 2.8e-26 124.8 270 35.2
Carub.0007s0104 Capsella rubella HOM05D003739 ORTHO05D003996 3.6e-26 124.4 327 33.0
Dinv13445 Davidia involucrata HOM05D003739 ORTHO05D003996 4.0e-25 120.9 519 28.5
EL10Ac3g05170 Beta vulgaris HOM05D003739 ORTHO05D003996 6.8e-25 120.2 778 27.2
Thhalv10024751m.g Eutrema salsugineum HOM05D003739 ORTHO05D003996 6.8e-25 120.2 542 29.3
SEGI_13436 Sequoiadendron giganteum HOM05D003739 ORTHO05D003996 8.9e-25 119.8 171 43.3
C09p07090 Brassica napus HOM05D003739 ORTHO05D003996 1.2e-24 119.4 268 35.8
BcaC01g00285 Brassica carinata HOM05D000394 ORTHO05D000299 7.5e-24 116.7 268 34.7
Psat7g051160 Pisum sativum HOM05D003739 ORTHO05D003996 9.8e-24 116.3 828 27.5
Medtr8g091850 Medicago truncatula HOM05D003739 ORTHO05D003996 1.3e-23 115.9 262 39.3
Dinv05658 Davidia involucrata HOM05D003739 ORTHO05D003996 2.9e-23 114.8 591 26.9
BcaNung02353 Brassica carinata HOM05D003739 ORTHO05D003996 8.3e-23 113.2 227 37.9
BraA06t27734Z Brassica rapa HOM05D003739 ORTHO05D003996 1.4e-22 112.5 428 29.7
Aa31LG7G15010 Aethionema arabicum HOM05D003739 ORTHO05D003996 2.4e-22 111.7 302 32.5
RcHm_v2.0_Chr6g0265821 Rosa chinensis HOM05D003739 ORTHO05D003996 5.4e-22 110.5 590 28.1
BolC9t53626H Brassica oleracea HOM05D003739 ORTHO05D003996 9.2e-22 109.8 273 34.4
FvH4_2g09510 Fragaria vesca HOM05D003739 ORTHO05D003996 9.2e-22 109.8 327 32.4
BcaC04g23559 Brassica carinata HOM05D003739 ORTHO05D003996 1.6e-21 109.0 269 34.2
Zm00001eb261130 Zea mays HOM05D025681 ORTHO05D003996 1.6e-21 109.0 231 35.5
Glyma.20G185167 Glycine max HOM05D003739 ORTHO05D003996 2.0e-21 108.6 162 44.4
C07p63340 Brassica napus HOM05D003739 ORTHO05D003996 3.0e-20 104.8 436 30.0
A09p06800 Brassica napus HOM05D003739 ORTHO05D003996 2.5e-19 101.7 268 33.2
MELO3C000818.2 Cucumis melo HOM05D003739 ORTHO05D003996 7.3e-19 100.1 80 66.2
Zm00001eb249730 Zea mays HOM05D025681 ORTHO05D003996 7.3e-19 100.1 172 39.0
BraA09t36326Z Brassica rapa HOM05D003739 ORTHO05D003996 2.8e-18 98.2 265 32.5
Glyma.10G205233 Glycine max HOM05D003739 ORTHO05D003996 3.6e-18 97.8 191 37.7
FvH4_2g03360 Fragaria vesca HOM05D003739 ORTHO05D003996 8.0e-18 96.7 328 31.1
Pp3c18_8710 Physcomitrium patens HOM05D003739 ORTHO05D003996 8.0e-18 96.7 165 37.0
AagrBONN_evm.TU.Sc2ySwM_368.1462 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.1e-17 96.3 223 31.4
Mapoly0023s0090 Marchantia polymorpha HOM05D003739 ORTHO05D003996 4.0e-17 94.4 93 46.2
Atru.chr12.1559 Acer truncatum HOM05D003739 ORTHO05D003996 5.2e-17 94.0 434 29.5
FAN15G1290 Fragaria x ananassa HOM05D003739 ORTHO05D003996 6.8e-17 93.6 158 38.6
AagrBONN_evm.TU.Sc2ySwM_340.755 Anthoceros agrestis HOM05D003739 ORTHO05D003996 2.6e-16 91.7 148 39.9
AagrBONN_evm.TU.Sc2ySwM_344.3723 Anthoceros agrestis HOM05D003739 ORTHO05D003996 5.8e-16 90.5 164 37.8
Dinv07186 Davidia involucrata HOM05D000053 ORTHO05D045112 7.5e-16 90.1 158 38.6
AagrBONN_evm.TU.Sc2ySwM_344.4525 Anthoceros agrestis HOM05D003739 ORTHO05D003996 3.7e-15 87.8 249 28.5
CARHR112440 Cardamine hirsuta HOM05D003739 ORTHO05D003996 5.4e-14 84.0 61 59.0
Pp3c21_11880 Physcomitrium patens HOM05D003739 ORTHO05D003996 9.2e-14 83.2 193 34.2
Actinidia20856 Actinidia chinensis HOM05D003739 ORTHO05D003996 1.1e-11 76.3 340 28.5
MCO01G601 Micromonas commoda HOM05D003739 ORTHO05D003996 1.1e-11 76.3 92 39.1
CBR_g31667 Chara braunii HOM05D003739 ORTHO05D003996 1.5e-11 75.9 179 31.3
Manes.04G075172 Manihot esculenta HOM05D003739 ORTHO05D003996 2.5e-11 75.1 81 51.9
CDE02G4347 Ceratophyllum demersum HOM05D003739 ORTHO05D003996 4.7e-10 70.9 58 55.2
FAN24G0282 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.1e-09 69.7 132 37.1
FAN20G1594 Fragaria x ananassa HOM05D003739 ORTHO05D003996 1.7e-07 62.4 136 34.6
Glyma.16G093750 Glycine max HOM05D003739 ORTHO05D003996 2.9e-07 61.6 99 41.4


User provided reference genes

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