Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 2.3e-215 751.9 370 100.0
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 2.0e-190 669.1 382 87.7
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 2.9e-189 665.2 370 89.2
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 2.5e-169 599.0 393 78.9
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 5.3e-167 591.3 372 78.5
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 6.9e-167 590.9 367 79.0
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.0e-166 589.3 367 78.7
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 2.9e-165 585.5 374 78.9
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.4e-164 583.2 374 78.1
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.4e-164 582.4 367 78.5
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 3.2e-164 582.0 368 77.4
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 5.4e-164 581.3 369 77.5
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 2.3e-162 575.9 372 78.2
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.9e-162 575.1 369 76.2
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 6.6e-162 574.3 374 76.5
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.6e-162 574.3 369 76.7
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 5.6e-161 571.2 368 77.7
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 7.3e-161 570.9 368 76.1
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 1.3e-160 570.1 366 73.8
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 6.2e-160 567.8 374 75.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 3.1e-159 565.5 368 74.2
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 1.2e-158 563.5 368 75.8
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 3.4e-158 562.0 367 74.9
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.4e-158 562.0 316 82.6
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 3.4e-158 562.0 369 75.3
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 7.6e-158 560.8 369 74.5
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-157 560.1 369 74.3
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.2e-157 559.3 375 73.6
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 3.8e-157 558.5 369 72.6
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.1e-156 557.0 390 72.3
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 1.9e-156 556.2 375 71.5
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.4e-156 555.8 368 73.1
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 2.4e-156 555.8 375 72.3
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 4.2e-156 555.1 310 83.9
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 2.1e-155 552.7 392 71.9
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 4.6e-155 551.6 369 72.9
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 7.9e-155 550.8 324 81.5
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 1.0e-154 550.4 376 72.6
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 1.0e-154 550.4 368 70.4
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 1.0e-154 550.4 361 75.6
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 2.3e-154 549.3 371 74.4
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.0e-154 548.9 377 72.1
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 3.9e-154 548.5 378 72.0
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 3.9e-154 548.5 332 78.6
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 5.1e-154 548.1 333 78.4
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 8.7e-154 547.4 369 71.0
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 1.1e-153 547.0 373 71.8
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 1.5e-153 546.6 371 73.3
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 9.6e-153 543.9 372 72.8
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.3e-152 543.5 371 70.6
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 1.6e-152 543.1 360 74.2
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 3.7e-152 542.0 381 70.6
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.8e-152 541.6 324 79.3
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.8e-152 541.6 371 74.1
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 4.8e-152 541.6 323 79.6
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 6.2e-152 541.2 363 72.7
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-151 540.4 376 71.3
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-151 540.0 381 70.3
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 1.4e-151 540.0 376 71.3
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 2.4e-151 539.3 368 72.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 2.4e-151 539.3 368 70.1
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 5.3e-151 538.1 366 72.7
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 9.0e-151 537.3 358 73.5
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 9.0e-151 537.3 369 69.9
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 1.5e-150 536.6 369 70.5
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 1.5e-150 536.6 366 69.7
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.6e-150 535.8 372 71.0
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.6e-150 535.8 368 72.6
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 3.4e-150 535.4 309 79.3
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 4.5e-150 535.0 372 72.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 4.5e-150 535.0 370 70.3
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 4.5e-150 535.0 369 71.3
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 7.6e-150 534.3 369 71.3
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 7.6e-150 534.3 369 71.3
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 1.3e-149 533.5 371 72.0
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 2.2e-149 532.7 368 71.2
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.8e-149 531.9 369 72.1
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 6.5e-149 531.2 375 70.1
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 1.4e-148 530.0 369 69.4
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.9e-148 529.6 368 69.3
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 3.2e-148 528.9 369 71.3
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 3.2e-148 528.9 372 71.5
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 5.5e-148 528.1 369 71.5
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 9.3e-148 527.3 369 71.5
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 1.2e-147 526.9 370 70.8
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 1.2e-147 526.9 370 70.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 2.1e-147 526.2 371 69.5
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 6.0e-147 524.6 391 67.8
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 6.0e-147 524.6 366 68.9
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.0e-146 523.9 368 72.0
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 1.0e-146 523.9 313 78.0
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 1.8e-146 523.1 368 72.0
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 1.8e-146 523.1 368 72.0
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 3.0e-146 522.3 367 71.9
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 5.1e-146 521.5 370 71.4
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-145 520.4 375 70.9
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 1.5e-145 520.0 371 71.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.3e-145 518.5 377 69.0
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 4.8e-144 515.0 370 67.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.0e-143 510.8 486 56.2
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 1.2e-142 510.4 370 70.3
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 3.4e-142 508.8 388 67.0
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.0e-141 507.3 333 76.3
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 1.3e-141 506.9 372 68.3
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 4.2e-140 501.9 337 72.7
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 7.4e-137 491.1 366 67.5
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.3e-136 490.3 323 74.3
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 6.9e-135 484.6 294 75.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.9e-130 468.8 323 72.8
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 4.3e-129 465.3 331 68.9
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 1.4e-127 460.3 341 70.1
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 1.1e-124 450.7 280 77.1
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 2.0e-118 429.9 286 70.6
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-115 420.2 374 61.5
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 2.1e-115 419.9 337 62.6
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 8.0e-115 417.9 318 64.5
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 4.4e-113 412.1 347 65.1
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 4.8e-112 408.7 286 68.9
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 1.0e-109 401.0 249 75.5
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.1e-107 393.3 291 65.6
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 2.3e-106 389.8 260 75.0
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.5e-105 387.1 292 63.4
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 1.0e-98 364.4 289 60.9
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 2.0e-97 360.1 275 64.4
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 9.8e-97 357.8 263 68.8
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 4.5e-94 349.0 298 57.4
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 3.3e-92 342.8 347 57.6
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 7.0e-87 325.1 293 57.3
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 3.9e-77 292.7 157 85.4
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 3.3e-76 289.7 172 79.7
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.4e-66 257.7 234 54.7
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 2.8e-59 233.4 127 81.1
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 4.9e-56 222.6 147 74.8
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-55 221.5 131 77.9
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 3.5e-54 216.5 334 42.5
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 6.9e-50 202.2 147 70.1
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 2.4e-47 193.7 147 68.7
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.3e-44 183.3 100 79.0
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 2.6e-41 173.7 130 63.1
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-41 173.3 147 60.5
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 1.3e-32 144.8 113 60.2
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 3.9e-29 133.3 71 85.9
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 3.9e-21 106.7 57 80.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 6.7e-21 105.9 67 74.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 6.7e-21 105.9 67 74.6
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 2.5e-20 104.0 114 51.8
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 9.7e-20 102.1 60 78.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 6.5e-16 89.4 45 84.4
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 1.4e-15 88.2 45 84.4
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 3.2e-15 87.0 44 86.4
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 1.4e-13 81.6 41 82.9
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.3e-12 77.0 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 6.3e-11 72.8 40 87.5
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 8.2e-11 72.4 70 54.3
CBR_g29560 Chara braunii HOM05D002780 ORTHO05D005882 5.5e-07 59.7 117 30.8
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 6.1e-06 56.2 51 54.9
Oeu030496.1 Olea europaea HOM05D004804 ORTHO05D005882 6.1e-06 56.2 93 45.2


User provided reference genes

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