Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001460 Sechium edule HOM05D001966 ORTHO05D007227 8.4e-47 189.9 88 100.0
Sed0012652 Sechium edule HOM05D001966 ORTHO05D007227 1.1e-38 162.9 121 70.2
C09p24670 Brassica napus HOM05D001966 ORTHO05D007227 4.6e-37 157.5 120 67.5
C09p39340 Brassica napus HOM05D001966 ORTHO05D007227 4.6e-37 157.5 120 67.5
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.3e-36 156.0 119 67.2
Sed0014217 Sechium edule HOM05D001966 ORTHO05D007227 8.7e-36 153.3 146 58.2
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 3.7e-34 147.9 138 58.7
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.4e-33 145.2 119 64.7
VMungo1127G1224 Vigna mungo HOM05D001966 ORTHO05D007227 3.4e-32 141.4 137 56.9
BcaC04g20781 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-31 139.4 109 66.1
BcaNung07085 Brassica carinata HOM05D001966 ORTHO05D010449 1.3e-31 139.4 109 66.1
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.9e-31 138.3 154 51.3
HPP92_028396 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
HPP92_028404 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
HPP92_028413 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
HPP92_028421 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
HPP92_028428 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
HPP92_028434 Vanilla planifolia HOM05D001966 ORTHO05D007227 2.9e-31 138.3 159 49.7
arahy.Tifrunner.gnm1.ann1.KZKE62 Arachis hypogaea HOM05D001966 ORTHO05D007227 2.5e-30 135.2 170 47.6
arahy.Tifrunner.gnm1.ann1.WI2XKB Arachis hypogaea HOM05D001966 ORTHO05D007227 4.2e-30 134.4 164 48.8
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 8.7e-28 126.7 147 50.3
arahy.Tifrunner.gnm1.ann1.3I0RGA Arachis hypogaea HOM05D001966 ORTHO05D007227 5.6e-27 124.0 163 44.8
Gohir.1Z049882 Gossypium hirsutum HOM05D001966 ORTHO05D007227 5.8e-24 114.0 127 52.0
Gohir.A04G039270 Gossypium hirsutum HOM05D001966 ORTHO05D007227 5.8e-24 114.0 127 52.0
Gohir.A05G323724 Gossypium hirsutum HOM05D001966 ORTHO05D007227 5.8e-24 114.0 127 52.0
Gorai.006G045900 Gossypium raimondii HOM05D001966 ORTHO05D007227 4.9e-23 110.9 108 56.5
Cfa023004 Carpinus fangiana HOM05D001966 ORTHO05D007227 8.4e-23 110.2 52 96.2
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 8.4e-23 110.2 52 96.2
ClCG11G009300 Citrullus lanatus HOM05D001966 ORTHO05D007227 1.1e-22 109.8 52 96.2
Potri.011G074201 Populus trichocarpa HOM05D001966 ORTHO05D007227 1.1e-22 109.8 52 94.2
Hma1.2p1_0544F.1_g175783 Hydrangea macrophylla HOM05D001966 ORTHO05D007227 4.2e-22 107.8 52 94.2
Lsat_1_v5_gn_2_20521 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
Lsat_1_v5_gn_3_110440 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
Lsat_1_v5_gn_4_147680 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
Lsat_1_v5_gn_4_147860 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
Lsat_1_v5_gn_5_181880 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
Lsat_1_v5_gn_9_39281 Lactuca sativa HOM05D001966 ORTHO05D007227 7.1e-22 107.1 52 92.3
BolSC29t60539H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC29t60556H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC35t60713H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC44t60814H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC45t60900H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC45t60918H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC46t60967H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BolSC49t61133H Brassica oleracea HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BraSC103t45419Z Brassica rapa HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BraSC25t45921Z Brassica rapa HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BraSC59t46509Z Brassica rapa HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
BraSC59t46540Z Brassica rapa HOM05D001966 ORTHO05D007227 1.2e-21 106.3 52 92.3
CDE02G0843 Ceratophyllum demersum HOM05D001966 ORTHO05D007227 3.5e-21 104.8 52 90.4
BolSC29t60498H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-21 104.4 52 92.3
BolSC35t60683H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-21 104.4 52 92.3
BolSC44t60831H Brassica oleracea HOM05D001966 ORTHO05D007227 4.6e-21 104.4 52 92.3
Lsat_1_v5_gn_6_94301 Lactuca sativa HOM05D001966 ORTHO05D007227 4.6e-21 104.4 52 90.4
Aqoxy2G01968 Aquilegia oxysepala HOM05D001966 ORTHO05D007227 6.1e-21 104.0 52 88.5
HanXRQChr05g0134861 Helianthus annuus HOM05D001966 ORTHO05D007227 7.9e-21 103.6 52 90.4
HPP92_028385 Vanilla planifolia HOM05D001966 ORTHO05D007227 7.9e-21 103.6 52 88.5
VMungo0464G1535 Vigna mungo HOM05D001966 ORTHO05D007227 7.9e-21 103.6 52 92.3
arahy.Tifrunner.gnm1.ann1.6ZZ12G Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-20 102.4 52 90.4
arahy.Tifrunner.gnm1.ann1.77ZW6W Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-20 102.4 52 90.4
arahy.Tifrunner.gnm1.ann1.EGZ6K4 Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-20 102.4 52 90.4
arahy.Tifrunner.gnm1.ann1.ZHN7AL Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-20 102.4 52 90.4
LjContig00489g0013211 Lotus japonicus HOM05D001966 ORTHO05D007227 1.8e-20 102.4 106 52.8
Gohir.A09G039165 Gossypium hirsutum HOM05D001966 ORTHO05D007227 3.9e-20 101.3 103 56.3
Sc25g0002010 Simmondsia chinensis HOM05D001966 ORTHO05D007227 3.9e-20 101.3 54 88.9
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 6.7e-20 100.5 52 88.5
EL10As10g23965 Beta vulgaris HOM05D001966 ORTHO05D007227 6.7e-20 100.5 54 87.0
Phvul.003G067400 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 6.7e-20 100.5 52 88.5
arahy.Tifrunner.gnm1.ann1.F2PHFK Arachis hypogaea HOM05D000890 ORTHO05D000697 1.1e-19 99.8 50 92.0
arahy.Tifrunner.gnm1.ann1.FN7561 Arachis hypogaea HOM05D001966 ORTHO05D007227 5.7e-19 97.4 134 44.8
LjContig00319g0014927 Lotus japonicus HOM05D001966 ORTHO05D007227 9.7e-19 96.7 53 86.8
Medtr0002s0250 Medicago truncatula HOM05D001966 ORTHO05D007227 9.7e-19 96.7 52 86.5
Medtr3g035620 Medicago truncatula HOM05D001966 ORTHO05D007227 9.7e-19 96.7 52 86.5
Peaxi162Scf00080g00518 Petunia axillaris HOM05D001966 ORTHO05D007227 4.8e-18 94.4 52 82.7
DCAR_001522 Daucus carota HOM05D001966 ORTHO05D007227 6.3e-18 94.0 52 82.7
Glyma.08G276350 Glycine max HOM05D001966 ORTHO05D007227 1.1e-17 93.2 52 78.8
Gorai.005G020800 Gossypium raimondii HOM05D001966 ORTHO05D007227 1.1e-17 93.2 143 40.6
arahy.Tifrunner.gnm1.ann1.I9YN8I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-17 92.4 52 78.8
FvH4_c3g00070 Fragaria vesca HOM05D001966 ORTHO05D007227 4.1e-17 91.3 54 85.2
Gohir.D02G016950 Gossypium hirsutum HOM05D001966 ORTHO05D007227 5.3e-17 90.9 143 42.0
FAN01G2668 Fragaria x ananassa HOM05D001966 ORTHO05D007227 1.2e-16 89.7 54 83.3
EL10Ac8g19705 Beta vulgaris HOM05D001966 ORTHO05D007227 2.6e-16 88.6 54 79.6
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 3.4e-16 88.2 45 86.7
Glyma.09G133875 Glycine max HOM05D001966 ORTHO05D007227 1.0e-15 86.7 52 80.8
Lsat_1_v5_gn_3_13340 Lactuca sativa HOM05D001966 ORTHO05D007227 2.9e-15 85.1 42 88.1
Glyma.05G084525 Glycine max HOM05D001966 ORTHO05D007227 3.8e-15 84.7 52 76.9
EL10As6g23662 Beta vulgaris HOM05D001325 ORTHO05D001540 8.5e-15 83.6 41 87.8
arahy.Tifrunner.gnm1.ann1.Q8ISGW Arachis hypogaea HOM05D001966 ORTHO05D007227 1.6e-13 79.3 47 78.7
Peaxi162Scf00383g00065 Petunia axillaris HOM05D001966 ORTHO05D007227 1.0e-12 76.6 40 85.0
Sed0008904 Sechium edule HOM05D001966 ORTHO05D007227 1.0e-12 76.6 65 61.5
arahy.Tifrunner.gnm1.ann1.UQV5ZS Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
arahy.Tifrunner.gnm1.ann1.Z8IK0I Arachis hypogaea HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
BcaC04g22012 Brassica carinata HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
BraSC58t46466Z Brassica rapa HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
Migut.B00950 Erythranthe guttata HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
Phvul.002G203700 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 1.8e-12 75.9 42 83.3
Sopen06g012240 Solanum pennellii HOM05D000014 ORTHO05D000016 1.8e-12 75.9 42 83.3
BcaNung01515 Brassica carinata HOM05D001966 ORTHO05D010449 2.3e-12 75.5 41 82.9
arahy.Tifrunner.gnm1.ann1.HASF1T Arachis hypogaea HOM05D001966 ORTHO05D007227 5.7e-11 70.9 42 78.6
SHI36394 Sapria himalayana HOM05D001966 ORTHO05D007227 1.7e-10 69.3 35 85.7
arahy.Tifrunner.gnm1.ann1.N1DH3R Arachis hypogaea HOM05D001966 ORTHO05D007227 2.2e-10 68.9 52 65.4
SHI36539 Sapria himalayana HOM05D001966 ORTHO05D007227 1.4e-09 66.2 31 93.5
MD15G1346300 Malus domestica HOM05D001966 ORTHO05D007227 4.1e-09 64.7 42 76.2
FAN13G0121 Fragaria x ananassa HOM05D001966 ORTHO05D007227 9.1e-09 63.5 52 67.3
Oeu022559.1 Olea europaea HOM05D001966 ORTHO05D011119 3.4e-08 61.6 39 71.8
Gohir.D09G040060 Gossypium hirsutum HOM05D001966 ORTHO05D007227 4.5e-08 61.2 32 81.2
EL10Ac8g19704 Beta vulgaris HOM05D001966 ORTHO05D007227 7.7e-08 60.5 28 92.9
ClCG04G004710 Citrullus lanatus HOM05D001966 ORTHO05D007429 3.8e-07 58.2 58 51.7
Phvul.003G142600 Phaseolus vulgaris HOM05D001966 ORTHO05D007227 1.1e-06 56.6 32 78.1
Sed0026700 Sechium edule HOM05D001966 ORTHO05D007227 2.5e-06 55.5 69 46.4
Nitab4.5_0003065g0030 Nicotiana tabacum HOM05D000216 ORTHO05D000634 9.4e-06 53.5 24 91.7


User provided reference genes

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