Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001454 Sechium edule HOM05D006492 ORTHO05D008432 0.0e+00 1808.1 1002 100.0
ClCG05G003620 Citrullus lanatus HOM05D006492 ORTHO05D008432 0.0e+00 1511.9 1031 80.7
CsaV3_3G011330 Cucumis sativus L. HOM05D006492 ORTHO05D008432 0.0e+00 1455.7 1025 77.8
MELO3C006341.2 Cucumis melo HOM05D006492 ORTHO05D008432 0.0e+00 1181.4 809 79.1
Prupe.1G060300 Prunus persica HOM05D006492 ORTHO05D008432 9.5e-280 967.2 1025 52.0
QL05p063769 Quercus lobata HOM05D006492 ORTHO05D008432 1.2e-279 966.8 1054 51.3
GSVIVG01029042001 Vitis vinifera HOM05D006492 ORTHO05D008432 2.1e-279 966.1 1021 53.0
Cfa014875 Carpinus fangiana HOM05D006492 ORTHO05D008432 7.6e-277 957.6 961 53.3
Haze_11549 Corylus avellana HOM05D006492 ORTHO05D008432 6.4e-276 954.5 1010 51.7
RcHm_v2.0_Chr4g0396881 Rosa chinensis HOM05D006492 ORTHO05D008432 7.1e-275 951.0 1024 52.0
MD00G1101100 Malus domestica HOM05D006492 ORTHO05D008432 5.6e-272 941.4 1021 51.3
Potri.003G175300 Populus trichocarpa HOM05D006492 ORTHO05D008432 9.6e-272 940.6 1009 51.6
FAN12G2087 Fragaria x ananassa HOM05D006492 ORTHO05D008432 4.9e-268 928.3 1024 50.7
FAN07G0933 Fragaria x ananassa HOM05D006492 ORTHO05D008432 2.4e-267 926.0 1033 50.6
Thecc.04G212600 Theobroma cacao HOM05D006492 ORTHO05D008432 1.0e-265 920.6 1004 50.9
FAN22G2187 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-265 920.2 1024 50.7
TAR365G0557 Trochodendron aralioides HOM05D006492 ORTHO05D008432 1.6e-263 913.3 1011 50.2
Actinidia25080 Actinidia chinensis HOM05D006492 ORTHO05D008432 3.6e-263 912.1 1010 49.6
Potri.001G053000 Populus trichocarpa HOM05D006492 ORTHO05D008432 1.8e-262 909.8 1013 50.4
Manes.15G049000 Manihot esculenta HOM05D006492 ORTHO05D008432 5.8e-261 904.8 1006 49.2
TAR365G0379 Trochodendron aralioides HOM05D006492 ORTHO05D008432 2.4e-259 899.4 1022 49.6
Gorai.006G055600 Gossypium raimondii HOM05D006492 ORTHO05D008432 3.5e-258 895.6 1005 49.0
Gohir.D09G053008 Gossypium hirsutum HOM05D006492 ORTHO05D008432 7.9e-258 894.4 1005 48.9
Dinv38285 Davidia involucrata HOM05D006492 ORTHO05D008432 1.0e-257 894.0 948 50.5
CANSAT78G0108 Cannabis sativa HOM05D006492 ORTHO05D008432 9.9e-253 877.5 1025 49.7
MSTRG.24638 Avicennia marina HOM05D006492 ORTHO05D008432 1.3e-252 877.1 1015 48.1
Sabra01G0037500 Salix brachista HOM05D006492 ORTHO05D008432 4.9e-252 875.2 1005 49.8
vmacro00516 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 1.1e-251 874.0 1030 47.2
COL.COLO4_34090 Corchorus olitorius HOM05D006492 ORTHO05D008432 7.9e-250 867.8 1010 48.3
Duzib212G0418 Durio zibethinus HOM05D006492 ORTHO05D008432 7.9e-250 867.8 950 49.3
arahy.Tifrunner.gnm1.ann1.TP3X9S Arachis hypogaea HOM05D006492 ORTHO05D008432 6.7e-249 864.8 995 47.4
Ciclev10004244m.g Citrus clementina HOM05D006492 ORTHO05D008432 8.7e-249 864.4 968 50.2
Glyma.10G192800 Glycine max HOM05D006492 ORTHO05D008432 4.0e-246 855.5 997 47.8
FAN17G1964 Fragaria x ananassa HOM05D006492 ORTHO05D008432 1.3e-244 850.5 1048 47.7
TWI09G1643 Tripterygium wilfordii HOM05D006492 ORTHO05D008432 1.0e-241 840.9 1038 46.6
Glyma.20G197700 Glycine max HOM05D006492 ORTHO05D008432 4.3e-240 835.5 959 48.1
CiPaw.01G204100 Carya illinoinensis HOM05D006492 ORTHO05D008432 5.7e-240 835.1 902 52.0
Phvul.007G134600 Phaseolus vulgaris HOM05D006492 ORTHO05D008432 7.6e-237 824.7 990 46.8
Nn1g03104 Nelumbo nucifera HOM05D006492 ORTHO05D008432 4.2e-235 818.9 1011 46.0
Lj5g0018955 Lotus japonicus HOM05D006492 ORTHO05D008432 2.1e-234 816.6 975 46.5
CSS0015325 Camellia sinensis var. sinensis HOM05D006492 ORTHO05D008432 6.3e-231 805.1 884 49.1
Migut.N00332 Erythranthe guttata HOM05D006492 ORTHO05D008432 6.3e-231 805.1 964 46.0
PGR142G2376 Punica granatum HOM05D006492 ORTHO05D008432 6.1e-226 788.5 1009 45.2
TPR.G13408 Trifolium pratense HOM05D006492 ORTHO05D008432 8.8e-225 784.6 980 45.1
Medtr1g090050 Medicago truncatula HOM05D006492 ORTHO05D008432 7.4e-224 781.6 967 45.4
Sopen09g034300 Solanum pennellii HOM05D006492 ORTHO05D008432 7.4e-224 781.6 1024 43.6
Sc14g0004710 Simmondsia chinensis HOM05D006492 ORTHO05D008432 8.2e-223 778.1 1005 44.1
HanXRQChr07g0185861 Helianthus annuus HOM05D006492 ORTHO05D008432 1.4e-222 777.3 990 44.4
Rhsim09G0049200 Rhododendron simsii HOM05D006492 ORTHO05D008432 2.4e-222 776.5 1070 42.4
SGA_v2.0_scaffold2G00843 Striga asiatica HOM05D006492 ORTHO05D008432 6.9e-222 775.0 1007 44.4
Hund24849 Selenicereus undatus HOM05D006492 ORTHO05D008432 1.9e-219 766.9 1006 43.4
Lalb_Chr21g0312661 Lupinus albus HOM05D006492 ORTHO05D008432 3.6e-218 762.7 892 47.6
EL10Ac3g06781 Beta vulgaris HOM05D006492 ORTHO05D008432 1.1e-216 757.7 1016 42.8
Cpa.g.sc59.86 Carica papaya HOM05D006492 ORTHO05D008432 1.7e-215 753.8 895 48.7
VMungo0720G0701 Vigna mungo HOM05D006492 ORTHO05D008432 1.2e-213 747.7 887 46.9
MBI10_g16832_MAGBIO Magnolia biondii HOM05D006492 ORTHO05D008432 1.3e-212 744.2 961 44.2
Nitab4.5_0000493g0030 Nicotiana tabacum HOM05D006492 ORTHO05D008432 1.7e-212 743.8 974 43.1
Psat6g170280 Pisum sativum HOM05D006492 ORTHO05D008432 1.7e-212 743.8 1018 43.0
Cc03_g07180 Coffea canephora HOM05D006492 ORTHO05D008432 2.9e-212 743.0 1022 41.9
AT1G04650 Arabidopsis thaliana HOM05D006492 ORTHO05D008432 1.5e-211 740.7 995 43.4
AL1G14360 Arabidopsis lyrata HOM05D006492 ORTHO05D008432 1.9e-211 740.3 996 42.8
Nitab4.5_0012325g0010 Nicotiana tabacum HOM05D006492 ORTHO05D008432 9.4e-211 738.0 962 43.6
ECA233G5226 Erigeron canadensis HOM05D006492 ORTHO05D008432 3.6e-210 736.1 995 42.1
THA.LOC104816017 Tarenaya hassleriana HOM05D006492 ORTHO05D008432 3.6e-210 736.1 1008 43.8
CARHR004030 Cardamine hirsuta HOM05D006492 ORTHO05D008432 6.7e-209 731.9 1002 43.1
Carub.0001s0390 Capsella rubella HOM05D006492 ORTHO05D008432 4.4e-208 729.2 1002 42.6
AUR62035934 Chenopodium quinoa HOM05D006492 ORTHO05D008432 4.5e-205 719.2 1017 41.5
Sp1g03490 Schrenkiella parvula HOM05D006492 ORTHO05D008432 7.7e-205 718.4 996 42.6
BolC8t46943H Brassica oleracea HOM05D006492 ORTHO05D008432 8.5e-204 714.9 1000 42.2
Thhalv10006668m.g Eutrema salsugineum HOM05D006492 ORTHO05D008432 5.5e-203 712.2 1022 41.1
Peaxi162Scf00047g01324 Petunia axillaris HOM05D006492 ORTHO05D008432 7.2e-203 711.8 986 41.9
C08p01350 Brassica napus HOM05D006492 ORTHO05D008432 9.4e-203 711.4 1000 42.1
Eucgr.H00098 Eucalyptus grandis HOM05D006492 ORTHO05D008432 2.1e-202 710.3 897 44.4
BraA08t35581Z Brassica rapa HOM05D006492 ORTHO05D008432 3.4e-200 703.0 1000 41.5
Lsat_1_v5_gn_6_62680 Lactuca sativa HOM05D006492 ORTHO05D008432 1.7e-199 700.7 998 41.5
Ca_10406_v3 Cicer arietinum L. HOM05D006492 ORTHO05D008432 6.3e-199 698.7 910 45.1
A10p03080 Brassica napus HOM05D006492 ORTHO05D008432 1.6e-197 694.1 998 41.7
A08p36780 Brassica napus HOM05D006492 ORTHO05D008432 2.7e-197 693.3 996 41.2
Ah.04g153340 Amaranthus hybridus HOM05D006492 ORTHO05D008432 1.9e-195 687.2 912 41.7
Lju414A5T31 Lonicera japonica HOM05D006492 ORTHO05D008432 1.2e-194 684.5 835 46.2
SalBow3G2597 Salvia bowleyana HOM05D006492 ORTHO05D008432 1.6e-189 667.5 924 41.9
ATR0787G047 Amborella trichopoda HOM05D006492 ORTHO05D008432 4.5e-189 666.0 1027 40.0
Aa31LG1G20220 Aethionema arabicum HOM05D006492 ORTHO05D008432 7.3e-187 658.7 995 39.4
unitig_899.g15531 Utricularia gibba HOM05D006492 ORTHO05D008432 1.2e-186 657.9 1005 39.5
Oeu051651.1 Olea europaea HOM05D006492 ORTHO05D008432 4.4e-184 649.4 769 46.2
Aqoxy2G03837 Aquilegia oxysepala HOM05D006492 ORTHO05D008432 1.3e-183 647.9 1012 39.3
DCAR_002278 Daucus carota HOM05D006492 ORTHO05D008432 9.2e-182 641.7 905 41.3
CAN.G1552.5 Capsicum annuum HOM05D006492 ORTHO05D008432 7.8e-181 638.6 877 40.7
PSO017G3024 Papaver somniferum HOM05D006492 ORTHO05D008432 2.3e-180 637.1 1045 39.8
FvH4_4g05680 Fragaria vesca HOM05D006492 ORTHO05D008432 8.0e-178 628.6 715 49.7
PSO063G2396 Papaver somniferum HOM05D006492 ORTHO05D008432 6.8e-177 625.5 1038 40.0
BcaC07g36892 Brassica carinata HOM05D006492 ORTHO05D008432 2.6e-168 597.0 901 40.1
Zm00001eb003580 Zea mays HOM05D006492 ORTHO05D008432 9.5e-163 578.6 1016 35.3
Atru.chr4.1802 Acer truncatum HOM05D006492 ORTHO05D008432 2.7e-157 560.5 653 47.2
CDE04G0311 Ceratophyllum demersum HOM05D006492 ORTHO05D008432 4.9e-151 539.7 828 37.3
Os03g0144000 Oryza sativa ssp. japonica HOM05D006492 ORTHO05D008432 9.3e-150 535.4 1047 34.8
Solyc09g091370.4 Solanum lycopersicum HOM05D006492 ORTHO05D008432 1.0e-140 505.4 684 43.3
SHI00019 Sapria himalayana HOM05D006492 ORTHO05D000009 6.0e-133 479.6 888 36.6
vmacro22821 Vaccinium macrocarpon HOM05D006492 ORTHO05D008432 7.4e-131 472.6 950 35.2
SEGI_21616 Sequoiadendron giganteum HOM05D006492 ORTHO05D008432 3.7e-122 443.7 913 32.9
BraA10t42581Z Brassica rapa HOM05D006492 ORTHO05D008432 4.2e-118 430.3 1003 32.1
arahy.Tifrunner.gnm1.ann1.LCJ3P1 Arachis hypogaea HOM05D006492 ORTHO05D008432 2.1e-53 215.3 271 44.6
HPP92_025560 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.3e-50 206.1 324 38.9
Atru.chr4.1801 Acer truncatum HOM05D006492 ORTHO05D008432 3.2e-49 201.4 193 57.0
Pp3c16_18660 Physcomitrium patens HOM05D006492 ORTHO05D008432 2.7e-48 198.4 999 23.0
HPP92_025559 Vanilla planifolia HOM05D006492 ORTHO05D008432 1.2e-40 172.9 638 26.2
SMO117G0361 Selaginella moellendorffii HOM05D006492 ORTHO05D008432 4.6e-40 171.0 772 24.1
Lju414A5G29 Lonicera japonica HOM05D006492 ORTHO05D008432 2.6e-35 155.2 134 60.4
C05p02850 Brassica napus HOM05D006492 ORTHO05D008432 6.9e-20 104.0 144 39.6
Mapoly0061s0085 Marchantia polymorpha HOM05D006492 ORTHO05D008432 6.4e-18 97.4 427 23.9
CBR_g61877 Chara braunii HOM05D006492 ORTHO05D008432 3.4e-11 75.1 848 20.5
AagrBONN_evm.TU.Sc2ySwM_117.2272 Anthoceros agrestis HOM05D006492 ORTHO05D008432 1.3e-10 73.2 442 23.3
C05p02840 Brassica napus HOM05D006492 ORTHO05D008432 3.2e-09 68.6 124 34.7
Gohir.D06G107600 Gossypium hirsutum HOM05D001986 ORTHO05D002283 9.7e-06 57.0 74 43.2


User provided reference genes

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