Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001438 Sechium edule HOM05D000443 ORTHO05D006935 8.3e-42 173.7 118 100.0
HanXRQChr02g0047201 Helianthus annuus HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 94.1
THA.LOC104807412 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.4e-41 172.2 118 94.1
CANSAT25G1435 Cannabis sativa HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 98.3
ECA234G1622 Erigeron canadensis HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 93.2
Nn8g40373 Nelumbo nucifera HOM05D000443 ORTHO05D006935 4.1e-41 171.4 118 98.3
Actinidia17989 Actinidia chinensis HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 93.2
Actinidia20580 Actinidia chinensis HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 93.2
MELO3C015698.2 Cucumis melo HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 98.3
Duzib132G0906 Durio zibethinus HOM05D000443 ORTHO05D006935 5.4e-41 171.0 118 98.3
Potri.009G169200 Populus trichocarpa HOM05D000443 ORTHO05D006935 7.1e-41 170.6 118 97.5
Dinv41862 Davidia involucrata HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 92.4
Manes.15G113600 Manihot esculenta HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
Nitab4.5_0000303g0260 Nicotiana tabacum HOM05D000443 ORTHO05D001066 9.2e-41 170.2 118 93.2
Peaxi162Scf00268g00613 Petunia axillaris HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 93.2
PGR142G2097 Punica granatum HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
Hund00097 Selenicereus undatus HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 93.2
Solyc06g065200.4 Solanum lycopersicum HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 93.2
Sopen06g023700 Solanum pennellii HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 93.2
PGSC0003DMG400026106 Solanum tuberosum HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 93.2
TWI79G0198 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 9.2e-41 170.2 118 97.5
Sed0000770 Sechium edule HOM05D000443 ORTHO05D006935 1.2e-40 169.9 118 97.5
Lsat_1_v5_gn_4_71260 Lactuca sativa HOM05D000443 ORTHO05D006935 1.6e-40 169.5 118 92.4
Thecc.02G147500 Theobroma cacao HOM05D000443 ORTHO05D006935 1.6e-40 169.5 118 95.8
Atru.chr5.3573 Acer truncatum HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 97.5
arahy.Tifrunner.gnm1.ann1.8Z4KFF Arachis hypogaea HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 92.4
arahy.Tifrunner.gnm1.ann1.X2RL59 Arachis hypogaea HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 92.4
CiPaw.06G114400 Carya illinoinensis HOM05D000443 ORTHO05D006935 2.1e-40 169.1 118 97.5
Ciclev10029609m.g Citrus clementina HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 96.6
FAN15G1278 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 92.4
FAN24G1683 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 92.4
FAN27G0741 Fragaria x ananassa HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 92.4
MD10G1142700 Malus domestica HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 92.4
TWI31G1377 Tripterygium wilfordii HOM05D000443 ORTHO05D006935 2.7e-40 168.7 118 95.8
CAN.G308.68 Capsicum annuum HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 92.4
Prupe.8G181600 Prunus persica HOM05D000443 ORTHO05D006935 3.5e-40 168.3 118 92.4
Aqoxy6G01540 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 98.3
arahy.Tifrunner.gnm1.ann1.KHE34K Arachis hypogaea HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
arahy.Tifrunner.gnm1.ann1.R1M58Z Arachis hypogaea HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
MSTRG.10170 Avicennia marina HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
CDE05G1952 Ceratophyllum demersum HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
COL.COLO4_03844 Corchorus olitorius HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 94.9
Duzib052G0133 Durio zibethinus HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 95.8
Migut.G00035 Erythranthe guttata HOM05D000443 ORTHO05D006935 4.6e-40 167.9 118 91.5
Lj4g0010337 Lotus japonicus HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 88.1
Sc08g0002080 Simmondsia chinensis HOM05D000443 ORTHO05D006935 6.0e-40 167.5 118 91.5
DCAR_003345 Daucus carota HOM05D000443 ORTHO05D006935 7.8e-40 167.2 118 89.8
CSS0021137 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 92.4
CSS0037601 Camellia sinensis var. sinensis HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 92.4
Cc11_g00630 Coffea canephora HOM05D000443 ORTHO05D006935 1.0e-39 166.8 118 90.7
Ah.01g010320 Amaranthus hybridus HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 91.5
ATR0605G139 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 90.7
EL10Ac9g21552 Beta vulgaris HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 91.5
AUR62010188 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 91.5
AUR62013189 Chenopodium quinoa HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 91.5
Glyma.08G289600 Glycine max HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 87.3
Glyma.18G134900 Glycine max HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 87.3
MD05G1141900 Malus domestica HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 91.5
Phvul.003G053800 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 87.3
TAR628G1273 Trochodendron aralioides HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 96.6
VMungo0720G1325 Vigna mungo HOM05D000443 ORTHO05D006935 1.3e-39 166.4 118 87.3
Os09g0491692 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 93.2
THA.LOC104804305 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 2.3e-39 165.6 118 89.0
PSO541G4498 Papaver somniferum HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 92.4
PSO675G5783 Papaver somniferum HOM05D000443 ORTHO05D006935 3.0e-39 165.2 118 92.4
A06p34070 Brassica napus HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 89.8
BraA06t26340Z Brassica rapa HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 89.8
Zm00001eb316840 Zea mays HOM05D000443 ORTHO05D006935 3.9e-39 164.9 118 93.2
Aa31LG8G14690 Aethionema arabicum HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
AL3G50230 Arabidopsis lyrata HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
AT2G17350 Arabidopsis thaliana HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
BcaB03g16486 Brassica carinata HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
BcaB08g34724 Brassica carinata HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
BcaC01g02933 Brassica carinata HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
A07p03730 Brassica napus HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
C03p58190 Brassica napus HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
BolC3t18088H Brassica oleracea HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
BraA07t28161Z Brassica rapa HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Carub.0003s3138 Capsella rubella HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
CARHR107480 Cardamine hirsuta HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Thhalv10022914m.g Eutrema salsugineum HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Os08g0511800 Oryza sativa ssp. japonica HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Sp3g30670 Schrenkiella parvula HOM05D000443 ORTHO05D006935 5.1e-39 164.5 118 89.8
Oeu022728.1 Olea europaea HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 85.6
Oeu029869.1 Olea europaea HOM05D000443 ORTHO05D006935 6.6e-39 164.1 118 89.0
CiPaw.05G094300 Carya illinoinensis HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 89.0
Gohir.D02G193500 Gossypium hirsutum HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 93.2
Gorai.005G216300 Gossypium raimondii HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 93.2
Lsat_1_v5_gn_8_120620 Lactuca sativa HOM05D000443 ORTHO05D006935 8.6e-39 163.7 118 82.2
Medtr8g063460 Medicago truncatula HOM05D000443 ORTHO05D006935 1.5e-38 162.9 116 83.6
BcaC06g36255 Brassica carinata HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
BolC7t41006H Brassica oleracea HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 89.0
Gohir.A03G170400 Gossypium hirsutum HOM05D000443 ORTHO05D006935 1.9e-38 162.5 118 93.2
arahy.Tifrunner.gnm1.ann1.5JP8BK Arachis hypogaea HOM05D000443 ORTHO05D006935 2.5e-38 162.2 118 85.6
Psat4g127000 Pisum sativum HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 89.0
SGA_v2.0_scaffold157G37346 Striga asiatica HOM05D000443 ORTHO05D006935 3.3e-38 161.8 118 88.1
vmacro20019 Vaccinium macrocarpon HOM05D000443 ORTHO05D006935 4.3e-38 161.4 118 92.4
HPP92_015754 Vanilla planifolia HOM05D000443 ORTHO05D006935 1.6e-37 159.5 118 88.1
Hma1.2p1_0271F.1_g108700 Hydrangea macrophylla HOM05D000443 ORTHO05D006935 6.2e-37 157.5 116 88.8
SalBow8G0190 Salvia bowleyana HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 79.7
unitig_62.g23670 Utricularia gibba HOM05D000443 ORTHO05D006935 5.2e-36 154.5 118 87.3
Pp3c6_23720 Physcomitrium patens HOM05D000443 ORTHO05D006935 8.9e-36 153.7 118 72.9
ClCG02G003280 Citrullus lanatus HOM05D000443 ORTHO05D006935 4.1e-33 144.8 104 99.0
Pp3c16_14160 Physcomitrium patens HOM05D000443 ORTHO05D006935 1.3e-31 139.8 116 74.1
CsaV3_7G002090 Cucumis sativus L. HOM05D000037 ORTHO05D000150 1.7e-31 139.4 101 99.0
Ah.01g017680 Amaranthus hybridus HOM05D000443 ORTHO05D006935 3.0e-31 138.7 118 80.5
Manes.03G097000 Manihot esculenta HOM05D000443 ORTHO05D006935 3.0e-31 138.7 101 98.0
Sabra09G0131200 Salix brachista HOM05D000037 ORTHO05D004802 3.0e-31 138.7 102 97.1
Haze_01963 Corylus avellana HOM05D000037 ORTHO05D000150 3.9e-31 138.3 150 58.0
RcHm_v2.0_Chr6g0281161 Rosa chinensis HOM05D000443 ORTHO05D006935 8.6e-31 137.1 101 92.1
AagrBONN_evm.TU.Sc2ySwM_369.59 Anthoceros agrestis HOM05D000443 ORTHO05D006935 1.1e-30 136.7 118 77.1
AagrBONN_evm.TU.Sc2ySwM_362.658 Anthoceros agrestis HOM05D000443 ORTHO05D006935 5.6e-30 134.4 116 76.7
HPP92_018958 Vanilla planifolia HOM05D000443 ORTHO05D006935 6.2e-29 131.0 103 86.4
Lalb_Chr05g0227911 Lupinus albus HOM05D000443 ORTHO05D006935 8.1e-29 130.6 102 90.2
GSVIVG01011124001 Vitis vinifera HOM05D000443 ORTHO05D006935 1.7e-26 122.9 90 98.9
Cc09_g10900 Coffea canephora HOM05D000443 ORTHO05D006935 3.5e-24 115.2 90 86.7
SMO358G0470 Selaginella moellendorffii HOM05D000443 ORTHO05D006935 1.0e-23 113.6 118 67.8
Psat4g126920 Pisum sativum HOM05D000443 ORTHO05D006935 3.9e-23 111.7 92 78.3
CBR_g20399 Chara braunii HOM05D000443 ORTHO05D006935 1.3e-21 106.7 108 64.8
Lj9A408T89 Lonicera japonica HOM05D000443 ORTHO05D006935 1.6e-21 106.3 59 98.3
THA.LOC104804551 Tarenaya hassleriana HOM05D000443 ORTHO05D006935 3.6e-21 105.1 92 78.3
MD05G1142800 Malus domestica HOM05D000443 ORTHO05D006935 6.2e-21 104.4 59 96.6
QL11p056627 Quercus lobata HOM05D000443 ORTHO05D006935 6.2e-21 104.4 59 94.9
Ca_14680_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.1e-20 103.6 59 93.2
Migut.G00034 Erythranthe guttata HOM05D000443 ORTHO05D006935 1.1e-20 103.6 59 94.9
FvH4_2g16970 Fragaria vesca HOM05D000443 ORTHO05D006935 1.8e-20 102.8 58 96.6
ATR0329G054 Amborella trichopoda HOM05D000443 ORTHO05D006935 2.4e-20 102.4 59 94.9
ATR0329G065 Amborella trichopoda HOM05D000443 ORTHO05D006935 1.2e-19 100.1 59 93.2
Mapoly0106s0018 Marchantia polymorpha HOM05D000443 ORTHO05D006935 2.0e-19 99.4 118 63.6
ClCG02G010820 Citrullus lanatus HOM05D000443 ORTHO05D006935 4.5e-19 98.2 119 55.5
Ca_13829_v3 Cicer arietinum L. HOM05D000443 ORTHO05D006935 1.7e-18 96.3 59 88.1
TPR.G26885 Trifolium pratense HOM05D000443 ORTHO05D006935 3.9e-15 85.1 59 83.1
Zm00001eb288990 Zea mays HOM05D000443 ORTHO05D006935 1.9e-14 82.8 96 76.0
MELO3C013484.2 Cucumis melo HOM05D000443 ORTHO05D006935 8.1e-13 77.4 117 41.0
Lj9A408T88 Lonicera japonica HOM05D000443 ORTHO05D006935 8.1e-13 77.4 38 100.0
Nitab4.5_0001082g0080 Nicotiana tabacum HOM05D000443 ORTHO05D001066 1.8e-12 76.3 38 97.4
TPR.G669 Trifolium pratense HOM05D000443 ORTHO05D006935 1.8e-12 76.3 38 97.4
Aqoxy6G01539 Aquilegia oxysepala HOM05D000443 ORTHO05D006935 4.0e-12 75.1 38 97.4
CsaV3_6G010030 Cucumis sativus L. HOM05D000443 ORTHO05D006935 6.9e-12 74.3 120 40.8
Phvul.010G144400 Phaseolus vulgaris HOM05D000443 ORTHO05D006935 3.4e-11 72.0 47 83.0
CBR_g764 Chara braunii HOM05D000443 ORTHO05D006935 2.2e-10 69.3 38 86.8


User provided reference genes

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