Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001434 Sechium edule HOM05D002385 ORTHO05D002245 3.1e-31 137.9 73 100.0
ClCG11G016780 Citrullus lanatus HOM05D002385 ORTHO05D002245 1.7e-29 132.1 73 94.5
MELO3C026402.2 Cucumis melo HOM05D002385 ORTHO05D002245 1.1e-23 112.8 75 89.3
CsaV3_4G032300 Cucumis sativus L. HOM05D002385 ORTHO05D002245 5.9e-22 107.1 75 85.3
QL04p061381 Quercus lobata HOM05D002385 ORTHO05D002245 9.8e-17 89.7 72 70.8
QL04p061407 Quercus lobata HOM05D002385 ORTHO05D002245 1.3e-16 89.4 72 69.4
QL04p061357 Quercus lobata HOM05D002385 ORTHO05D002245 1.1e-15 86.3 72 68.1
QL04p061416 Quercus lobata HOM05D002385 ORTHO05D002245 5.4e-15 84.0 63 73.0
Actinidia39326 Actinidia chinensis HOM05D002385 ORTHO05D002245 3.5e-14 81.3 71 70.4
Potri.016G019201 Populus trichocarpa HOM05D002385 ORTHO05D002245 3.5e-14 81.3 75 65.3
Cfa023568 Carpinus fangiana HOM05D002385 ORTHO05D002245 4.6e-14 80.9 73 67.1
Haze_13597 Corylus avellana HOM05D002385 ORTHO05D002245 1.0e-13 79.7 74 68.9
Duzib133G0918 Durio zibethinus HOM05D002385 ORTHO05D002245 1.3e-13 79.3 71 69.0
Duzib138G1429 Durio zibethinus HOM05D002385 ORTHO05D002245 1.7e-13 79.0 70 62.9
Oeu048060.1 Olea europaea HOM05D002385 ORTHO05D002245 1.7e-13 79.0 74 67.6
Potri.006G021600 Populus trichocarpa HOM05D002385 ORTHO05D002245 1.7e-13 79.0 75 62.7
Actinidia30458 Actinidia chinensis HOM05D002385 ORTHO05D002245 2.3e-13 78.6 71 69.0
Dinv02957 Davidia involucrata HOM05D002385 ORTHO05D002245 2.3e-13 78.6 66 71.2
Thecc.01G172200 Theobroma cacao HOM05D002385 ORTHO05D002245 2.9e-13 78.2 69 65.2
Sabra16G0021200 Salix brachista HOM05D002385 ORTHO05D002245 3.9e-13 77.8 76 67.1
Sabra16G0025900 Salix brachista HOM05D002385 ORTHO05D002245 3.9e-13 77.8 76 67.1
COL.COLO4_07164 Corchorus olitorius HOM05D002385 ORTHO05D002245 1.9e-12 75.5 70 65.7
Dinv18438 Davidia involucrata HOM05D002385 ORTHO05D002245 1.9e-12 75.5 78 61.5
Eucgr.A00899 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.5e-12 75.1 66 71.2
TWI60G1403 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 2.5e-12 75.1 63 68.3
Manes.09G073500 Manihot esculenta HOM05D002385 ORTHO05D002245 3.3e-12 74.7 73 63.0
PGR031G2469 Punica granatum HOM05D002385 ORTHO05D002245 3.3e-12 74.7 70 68.6
FAN23G3060 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.3e-12 74.3 55 80.0
Cfa023028 Carpinus fangiana HOM05D002385 ORTHO05D002245 7.3e-12 73.6 74 66.2
THA.LOC104826161 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 7.3e-12 73.6 70 67.1
Oeu048064.1 Olea europaea HOM05D002385 ORTHO05D002245 1.2e-11 72.8 70 65.7
Oeu003091.1 Olea europaea HOM05D002385 ORTHO05D002245 2.1e-11 72.0 74 63.5
Eucgr.A00897 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.8e-11 71.6 66 66.7
Eucgr.A00898 Eucalyptus grandis HOM05D002385 ORTHO05D002245 2.8e-11 71.6 66 66.7
Haze_13593 Corylus avellana HOM05D002385 ORTHO05D002245 4.7e-11 70.9 69 62.3
FvH4_1g21001 Fragaria vesca HOM05D002385 ORTHO05D002245 4.7e-11 70.9 73 63.0
Actinidia11007 Actinidia chinensis HOM05D002385 ORTHO05D002245 6.1e-11 70.5 70 64.3
Eucgr.A00896 Eucalyptus grandis HOM05D002385 ORTHO05D002245 6.1e-11 70.5 74 62.2
GSVIVG01015781001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.0e-11 70.1 75 65.3
GSVIVG01015789001 Vitis vinifera HOM05D002385 ORTHO05D002245 8.0e-11 70.1 75 65.3
Cfa023569 Carpinus fangiana HOM05D002385 ORTHO05D002245 1.0e-10 69.7 62 67.7
CiPaw.03G113600 Carya illinoinensis HOM05D002385 ORTHO05D002245 1.0e-10 69.7 75 60.0
HanXRQChr11g0335361 Helianthus annuus HOM05D002385 ORTHO05D002245 1.8e-10 68.9 64 67.2
RcHm_v2.0_Chr2g0114521 Rosa chinensis HOM05D002385 ORTHO05D002245 1.8e-10 68.9 77 64.9
TAR626G0681 Trochodendron aralioides HOM05D002385 ORTHO05D002245 2.3e-10 68.6 74 56.8
Migut.M00099 Erythranthe guttata HOM05D002385 ORTHO05D002245 3.1e-10 68.2 69 65.2
Medtr4g091090 Medicago truncatula HOM05D002385 ORTHO05D002245 3.1e-10 68.2 72 58.3
Actinidia11006 Actinidia chinensis HOM05D002385 ORTHO05D002245 4.0e-10 67.8 75 58.7
Psat6g029000 Pisum sativum HOM05D002385 ORTHO05D002245 4.0e-10 67.8 67 61.2
Rhsim06G0138200 Rhododendron simsii HOM05D002385 ORTHO05D002245 4.0e-10 67.8 69 59.4
Sabra06G0015400 Salix brachista HOM05D002385 ORTHO05D002245 4.0e-10 67.8 63 68.3
CSS0045060 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 5.2e-10 67.4 71 64.8
DCAR_013336 Daucus carota HOM05D002385 ORTHO05D002245 5.2e-10 67.4 55 65.5
Gohir.D07G190900 Gossypium hirsutum HOM05D002385 ORTHO05D002245 5.2e-10 67.4 70 60.0
Gorai.001G213300 Gossypium raimondii HOM05D002385 ORTHO05D002245 5.2e-10 67.4 70 60.0
RcHm_v2.0_Chr2g0114501 Rosa chinensis HOM05D002385 ORTHO05D002245 5.2e-10 67.4 73 63.0
Haze_13594 Corylus avellana HOM05D002385 ORTHO05D002245 6.8e-10 67.0 53 73.6
vmacro09249 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 6.8e-10 67.0 77 58.4
unitig_699.g19631 Utricularia gibba HOM05D002385 ORTHO05D002245 8.9e-10 66.6 72 59.7
Gohir.D07G086800 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.2e-09 66.2 73 63.0
Gorai.001G092800 Gossypium raimondii HOM05D002385 ORTHO05D002245 1.2e-09 66.2 73 63.0
CSS0047514 Camellia sinensis var. sinensis HOM05D002385 ORTHO05D002245 1.5e-09 65.9 72 63.9
THA.LOC109116124 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 1.5e-09 65.9 69 53.6
Ca_22650_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 2.0e-09 65.5 65 64.6
Atru.chr8.975 Acer truncatum HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 66.2
Atru.chr8.976 Acer truncatum HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 66.2
Cfa023571 Carpinus fangiana HOM05D002385 ORTHO05D002245 2.6e-09 65.1 52 73.1
Haze_13596 Corylus avellana HOM05D002385 ORTHO05D002245 2.6e-09 65.1 52 73.1
FAN26G3044 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.6e-09 65.1 74 62.2
Lj3g0003491 Lotus japonicus HOM05D002385 ORTHO05D002245 2.6e-09 65.1 70 62.9
MD17G1127900 Malus domestica HOM05D002385 ORTHO05D002245 2.6e-09 65.1 77 57.1
Medtr1g040735 Medicago truncatula HOM05D002385 ORTHO05D002245 2.6e-09 65.1 67 61.2
TPR.G9755 Trifolium pratense HOM05D002385 ORTHO05D002245 2.6e-09 65.1 68 63.2
Glyma.13G003300 Glycine max HOM05D002385 ORTHO05D002245 3.4e-09 64.7 73 57.5
BraA04t17993Z Brassica rapa HOM05D002385 ORTHO05D002245 4.4e-09 64.3 72 48.6
Glyma.08G170900 Glycine max HOM05D002385 ORTHO05D002245 4.4e-09 64.3 69 60.9
Lj6g0002718 Lotus japonicus HOM05D002385 ORTHO05D002245 4.4e-09 64.3 73 60.3
Duzib133G1087 Durio zibethinus HOM05D002385 ORTHO05D002245 5.8e-09 63.9 81 56.8
Peaxi162Scf00322g00010 Petunia axillaris HOM05D002385 ORTHO05D002245 5.8e-09 63.9 55 70.9
TAR627G0329 Trochodendron aralioides HOM05D002385 ORTHO05D002245 5.8e-09 63.9 54 68.5
Cc05_g00090 Coffea canephora HOM05D002385 ORTHO05D002245 7.5e-09 63.5 47 76.6
Medtr1g040775 Medicago truncatula HOM05D002385 ORTHO05D002245 7.5e-09 63.5 67 58.2
Medtr5g042360 Medicago truncatula HOM05D002385 ORTHO05D002245 7.5e-09 63.5 67 58.2
RcHm_v2.0_Chr2g0153701 Rosa chinensis HOM05D002385 ORTHO05D002245 7.5e-09 63.5 74 60.8
GSVIVG01015788001 Vitis vinifera HOM05D002385 ORTHO05D002245 7.5e-09 63.5 74 58.1
Aqoxy1G01477 Aquilegia oxysepala HOM05D002385 ORTHO05D002245 9.8e-09 63.2 72 56.9
DCAR_016934 Daucus carota HOM05D002385 ORTHO05D002245 9.8e-09 63.2 57 68.4
Glyma.08G171400 Glycine max HOM05D002385 ORTHO05D002245 9.8e-09 63.2 64 56.2
C04p61680 Brassica napus HOM05D002385 ORTHO05D002245 1.3e-08 62.8 72 50.0
Medtr2g069430 Medicago truncatula HOM05D002385 ORTHO05D002245 1.3e-08 62.8 66 62.1
Nn7g38131 Nelumbo nucifera HOM05D002385 ORTHO05D002245 1.3e-08 62.8 73 56.2
Prupe.6G185200 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-08 62.8 81 58.0
Prupe.6G185600 Prunus persica HOM05D002385 ORTHO05D002245 1.3e-08 62.8 62 66.1
GSVIVG01015779001 Vitis vinifera HOM05D002385 ORTHO05D002245 1.3e-08 62.8 68 50.0
Actinidia11100 Actinidia chinensis HOM05D003155 ORTHO05D002245 1.7e-08 62.4 70 60.0
RcHm_v2.0_Chr2g0153751 Rosa chinensis HOM05D002385 ORTHO05D002245 1.7e-08 62.4 73 57.5
Solyc05g016060.4 Solanum lycopersicum HOM05D002385 ORTHO05D002245 1.7e-08 62.4 51 74.5
Sopen05g012340 Solanum pennellii HOM05D002385 ORTHO05D002245 1.7e-08 62.4 51 74.5
BcaC02g07945 Brassica carinata HOM05D002385 ORTHO05D002245 2.2e-08 62.0 72 48.6
Glyma.15G256000 Glycine max HOM05D002385 ORTHO05D002245 2.2e-08 62.0 71 54.9
Gohir.A07G081200 Gossypium hirsutum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 60 65.0
Nitab4.5_0003177g0010 Nicotiana tabacum HOM05D002385 ORTHO05D002245 2.2e-08 62.0 52 76.9
TPR.G9734 Trifolium pratense HOM05D002385 ORTHO05D002245 2.2e-08 62.0 54 66.7
Haze_13600 Corylus avellana HOM05D002385 ORTHO05D002245 2.9e-08 61.6 52 71.2
BcaB06g28585 Brassica carinata HOM05D002385 ORTHO05D002245 3.7e-08 61.2 72 48.6
Eucgr.A00900 Eucalyptus grandis HOM05D002385 ORTHO05D002245 3.7e-08 61.2 67 56.7
PGSC0003DMG400019578 Solanum tuberosum HOM05D002385 ORTHO05D002245 3.7e-08 61.2 64 62.5
GSVIVG01015780001 Vitis vinifera HOM05D002385 ORTHO05D002245 3.7e-08 61.2 74 55.4
Prupe.3G187300 Prunus persica HOM05D002385 ORTHO05D002245 4.9e-08 60.8 75 58.7
Prupe.3G187200 Prunus persica HOM05D002385 ORTHO05D002245 6.4e-08 60.5 51 70.6
Prupe.6G185500 Prunus persica HOM05D002385 ORTHO05D002245 6.4e-08 60.5 82 58.5
Medtr2g069420 Medicago truncatula HOM05D002385 ORTHO05D002245 8.3e-08 60.1 68 60.3
Actinidia11099 Actinidia chinensis HOM05D002385 ORTHO05D002245 1.1e-07 59.7 70 50.0
Carub.0003s2241 Capsella rubella HOM05D002385 ORTHO05D002245 1.1e-07 59.7 65 58.5
Gohir.A07G184100 Gossypium hirsutum HOM05D002385 ORTHO05D002245 1.1e-07 59.7 70 55.7
AL3G36500 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.4e-07 59.3 67 59.7
AT3G22240 Arabidopsis thaliana HOM05D002385 ORTHO05D002245 1.4e-07 59.3 67 59.7
CAN.G1202.1 Capsicum annuum HOM05D002385 ORTHO05D002245 1.4e-07 59.3 51 70.6
MD09G1137600 Malus domestica HOM05D002385 ORTHO05D002245 1.4e-07 59.3 77 53.2
Psat1g011360 Pisum sativum HOM05D002385 ORTHO05D002245 1.4e-07 59.3 67 58.2
RcHm_v2.0_Chr2g0153691 Rosa chinensis HOM05D002385 ORTHO05D002245 1.4e-07 59.3 74 58.1
TWI34G0572 Tripterygium wilfordii HOM05D002385 ORTHO05D002245 1.4e-07 59.3 72 59.7
BcaB02g10483 Brassica carinata HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 48.6
A05p12990 Brassica napus HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 48.6
BraA05t20239Z Brassica rapa HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 48.6
Prupe.6G185400 Prunus persica HOM05D002385 ORTHO05D002245 1.9e-07 58.9 62 64.5
RcHm_v2.0_Chr2g0153711 Rosa chinensis HOM05D002385 ORTHO05D002245 1.9e-07 58.9 73 54.8
Sp4g14570 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.9e-07 58.9 72 48.6
vmacro12336 Vaccinium macrocarpon HOM05D002385 ORTHO05D002245 1.9e-07 58.9 52 67.3
FvH4_6g39680 Fragaria vesca HOM05D002385 ORTHO05D002245 2.4e-07 58.5 73 56.2
FAN05G4252 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.4e-07 58.5 73 56.2
FAN14G2541 Fragaria x ananassa HOM05D002385 ORTHO05D002245 2.4e-07 58.5 73 56.2
Glyma.08G170800 Glycine max HOM05D002385 ORTHO05D002245 2.4e-07 58.5 63 55.6
Glyma.08G172300 Glycine max HOM05D002385 ORTHO05D002245 2.4e-07 58.5 53 67.9
Lj3g0007335 Lotus japonicus HOM05D002385 ORTHO05D002245 2.4e-07 58.5 72 52.8
Oeu027273.1 Olea europaea HOM05D002385 ORTHO05D002245 2.4e-07 58.5 51 64.7
BcaC09g49159 Brassica carinata HOM05D002385 ORTHO05D002245 3.2e-07 58.2 56 66.1
Thhalv10021881m.g Eutrema salsugineum HOM05D002385 ORTHO05D002245 3.2e-07 58.2 69 58.0
FvH4_6g39660 Fragaria vesca HOM05D002385 ORTHO05D002245 3.2e-07 58.2 73 56.2
RcHm_v2.0_Chr2g0153741 Rosa chinensis HOM05D002385 ORTHO05D002245 3.2e-07 58.2 74 56.8
Sp3g20030 Schrenkiella parvula HOM05D002385 ORTHO05D002245 3.2e-07 58.2 71 59.2
THA.LOC104822278 Tarenaya hassleriana HOM05D002385 ORTHO05D002245 3.2e-07 58.2 63 49.2
C01p42010 Brassica napus HOM05D002385 ORTHO05D002245 4.1e-07 57.8 75 57.3
Ca_03673_v3 Cicer arietinum L. HOM05D002385 ORTHO05D002245 4.1e-07 57.8 68 55.9
ClCG09G022550 Citrullus lanatus HOM05D002385 ORTHO05D002245 4.1e-07 57.8 68 50.0
FAN02G0915 Fragaria x ananassa HOM05D002385 ORTHO05D002245 4.1e-07 57.8 73 56.2
Sed0017850 Sechium edule HOM05D002385 ORTHO05D002245 4.1e-07 57.8 53 52.8
Dinv19617 Davidia involucrata HOM05D002385 ORTHO05D002245 5.4e-07 57.4 82 43.9
Migut.M01554 Erythranthe guttata HOM05D002385 ORTHO05D002245 5.4e-07 57.4 76 48.7
Manes.05G115500 Manihot esculenta HOM05D002385 ORTHO05D002245 5.4e-07 57.4 64 46.9
BcaC02g11342 Brassica carinata HOM05D002385 ORTHO05D002245 7.0e-07 57.0 72 47.2
C04p17420 Brassica napus HOM05D002385 ORTHO05D002245 7.0e-07 57.0 72 47.2
FAN14G3003 Fragaria x ananassa HOM05D002385 ORTHO05D002245 7.0e-07 57.0 73 57.5
Aa31LG5G4320 Aethionema arabicum HOM05D002385 ORTHO05D002245 1.2e-06 56.2 67 47.8
AL4G27550 Arabidopsis lyrata HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 49.3
CANSAT64G2629 Cannabis sativa HOM05D002385 ORTHO05D002245 1.2e-06 56.2 73 50.7
Sp4g14580 Schrenkiella parvula HOM05D002385 ORTHO05D002245 1.2e-06 56.2 71 52.1
SGA_v2.0_scaffold181G39736 Striga asiatica HOM05D003210 ORTHO05D000001 1.2e-06 56.2 80 52.5
HanXRQChr03g0078081 Helianthus annuus HOM05D002385 ORTHO05D002245 1.6e-06 55.8 64 59.4
Sabra15G0137200 Salix brachista HOM05D012689 ORTHO05D002245 1.6e-06 55.8 54 61.1
Cpa.g.sc7.104 Carica papaya HOM05D002385 ORTHO05D002245 2.0e-06 55.5 48 58.3
CiPaw.09G078200 Carya illinoinensis HOM05D002385 ORTHO05D002245 2.7e-06 55.1 54 63.0
Phvul.005G057500 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.7e-06 55.1 73 49.3
Phvul.006G001200 Phaseolus vulgaris HOM05D002385 ORTHO05D002245 2.7e-06 55.1 56 60.7
A01p32930 Brassica napus HOM05D002385 ORTHO05D002245 3.5e-06 54.7 67 56.7
BraA01t03414Z Brassica rapa HOM05D002385 ORTHO05D002245 3.5e-06 54.7 67 56.7
CARHR098150 Cardamine hirsuta HOM05D002385 ORTHO05D002245 3.5e-06 54.7 67 55.2
ECA236G0309 Erigeron canadensis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 68 57.4
ECA240G4719 Erigeron canadensis HOM05D002385 ORTHO05D002245 3.5e-06 54.7 64 60.9
Medtr2g069400 Medicago truncatula HOM05D002385 ORTHO05D002245 3.5e-06 54.7 68 50.0
HPP92_004187 Vanilla planifolia HOM05D002385 ORTHO05D002245 3.5e-06 54.7 84 44.0
Glyma.15G256200 Glycine max HOM05D002385 ORTHO05D002245 4.6e-06 54.3 51 54.9
TPR.G9750 Trifolium pratense HOM05D002385 ORTHO05D002245 4.6e-06 54.3 68 48.5
Atru.chr11.2673 Acer truncatum HOM05D002385 ORTHO05D002245 6.0e-06 53.9 55 58.2
C05p41120 Brassica napus HOM05D002385 ORTHO05D002245 6.0e-06 53.9 63 52.4
BolC5t32855H Brassica oleracea HOM05D002385 ORTHO05D002245 6.0e-06 53.9 63 52.4
Sed0023256 Sechium edule HOM05D002385 ORTHO05D002245 7.8e-06 53.5 53 50.9


User provided reference genes

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