Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001415 Sechium edule HOM05D003268 ORTHO05D003719 1.5e-138 496.5 315 100.0
Sed0010166 Sechium edule HOM05D003268 ORTHO05D003719 1.0e-41 174.9 196 49.0
MELO3C006751.2 Cucumis melo HOM05D003268 ORTHO05D003719 1.1e-40 171.4 194 49.0
CsaV3_3G015530 Cucumis sativus L. HOM05D003268 ORTHO05D003719 7.9e-31 138.7 194 41.8
Thecc.04G313000 Theobroma cacao HOM05D003268 ORTHO05D003719 5.3e-27 125.9 171 42.1
Ca_21366_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 9.1e-27 125.2 175 40.6
COL.COLO4_34517 Corchorus olitorius HOM05D003268 ORTHO05D003719 9.1e-27 125.2 160 45.0
Duzib212G0032 Durio zibethinus HOM05D003268 ORTHO05D003719 1.5e-26 124.4 192 39.1
Manes.11G020800 Manihot esculenta HOM05D003268 ORTHO05D003719 2.0e-26 124.0 184 40.2
Lj6P701T18 Lonicera japonica HOM05D003268 ORTHO05D003719 2.6e-26 123.6 157 45.2
PSO761G0464 Papaver somniferum HOM05D003268 ORTHO05D003719 3.4e-26 123.2 181 39.8
Cpa.g.sc53.77 Carica papaya HOM05D003268 ORTHO05D003719 1.3e-25 121.3 177 40.7
PSO210G7784 Papaver somniferum HOM05D003268 ORTHO05D003719 2.9e-25 120.2 175 40.0
Sed0007403 Sechium edule HOM05D003268 ORTHO05D003719 2.9e-25 120.2 195 37.4
CAN.G1248.20 Capsicum annuum HOM05D003268 ORTHO05D003719 3.8e-25 119.8 177 39.0
QL06p014213 Quercus lobata HOM05D003268 ORTHO05D003719 6.5e-25 119.0 206 36.9
Aqoxy2G02513 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 8.5e-25 118.6 167 40.7
PSO170G4270 Papaver somniferum HOM05D003268 ORTHO05D003719 8.5e-25 118.6 167 37.7
Psat0s1206g0240 Pisum sativum HOM05D003268 ORTHO05D003719 1.1e-24 118.2 187 38.5
TPR.G12613 Trifolium pratense HOM05D003268 ORTHO05D003719 1.4e-24 117.9 137 46.0
Gohir.D02G064200 Gossypium hirsutum HOM05D003268 ORTHO05D003719 1.9e-24 117.5 202 36.6
Gorai.005G072500 Gossypium raimondii HOM05D003268 ORTHO05D003719 1.9e-24 117.5 202 36.6
Medtr4g124100 Medicago truncatula HOM05D003268 ORTHO05D003719 1.9e-24 117.5 169 40.2
Dinv29508 Davidia involucrata HOM05D003268 ORTHO05D003719 2.5e-24 117.1 149 44.3
Potri.010G002200 Populus trichocarpa HOM05D003268 ORTHO05D003719 2.5e-24 117.1 176 42.0
Sabra10G0001700 Salix brachista HOM05D003268 ORTHO05D003719 2.5e-24 117.1 176 42.0
Haze_00767 Corylus avellana HOM05D003268 ORTHO05D003719 3.2e-24 116.7 165 43.0
Dinv30944 Davidia involucrata HOM05D003268 ORTHO05D003719 3.2e-24 116.7 189 39.2
Gohir.A02G058400 Gossypium hirsutum HOM05D003268 ORTHO05D003719 4.2e-24 116.3 202 37.1
Lalb_Chr07g0181591 Lupinus albus HOM05D003268 ORTHO05D003719 4.2e-24 116.3 195 36.9
Atru.chr4.3150 Acer truncatum HOM05D003268 ORTHO05D003719 9.4e-24 115.2 160 41.2
Manes.08G107700 Manihot esculenta HOM05D003268 ORTHO05D003719 9.4e-24 115.2 168 39.9
TAR636G0250 Trochodendron aralioides HOM05D003268 ORTHO05D003719 9.4e-24 115.2 177 40.1
TAR362G1252 Trochodendron aralioides HOM05D003268 ORTHO05D003719 2.1e-23 114.0 173 37.0
MBI19_g47476_MAGBIO Magnolia biondii HOM05D003268 ORTHO05D003719 3.6e-23 113.2 177 41.2
Solyc01g101160.2 Solanum lycopersicum HOM05D003268 ORTHO05D003719 4.7e-23 112.8 183 39.3
Sopen01g044640 Solanum pennellii HOM05D003268 ORTHO05D003719 4.7e-23 112.8 183 39.3
PGSC0003DMG400044126 Solanum tuberosum HOM05D003268 ORTHO05D003719 4.7e-23 112.8 183 39.3
MELO3C015242.2 Cucumis melo HOM05D003268 ORTHO05D003719 6.1e-23 112.5 171 39.2
CsaV3_1G038030 Cucumis sativus L. HOM05D003268 ORTHO05D003719 6.1e-23 112.5 171 39.2
Oeu020279.1 Olea europaea HOM05D003268 ORTHO05D003719 8.0e-23 112.1 170 41.2
Oeu034985.1 Olea europaea HOM05D003268 ORTHO05D003719 8.0e-23 112.1 169 40.8
CSS0047817 Camellia sinensis var. sinensis HOM05D003268 ORTHO05D003719 1.4e-22 111.3 163 39.3
ClCG03G017870 Citrullus lanatus HOM05D003268 ORTHO05D003719 1.4e-22 111.3 190 37.9
Cc02_g35810 Coffea canephora HOM05D003268 ORTHO05D003719 1.4e-22 111.3 163 40.5
PGR031G0843 Punica granatum HOM05D003268 ORTHO05D003719 1.4e-22 111.3 191 36.6
Lalb_Chr13g0299031 Lupinus albus HOM05D003268 ORTHO05D003719 1.8e-22 110.9 178 38.8
Aa31LG1G5560 Aethionema arabicum HOM05D003268 ORTHO05D003719 2.3e-22 110.5 170 39.4
TWI09G0361 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 2.3e-22 110.5 169 40.2
CANSAT54G2527 Cannabis sativa HOM05D003268 ORTHO05D003719 3.0e-22 110.2 213 35.2
CiPaw.01G129300 Carya illinoinensis HOM05D003268 ORTHO05D003719 3.0e-22 110.2 173 39.3
Nitab4.5_0005904g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 3.0e-22 110.2 185 35.7
AT1G09520 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 5.2e-22 109.4 197 38.6
Haze_03993 Corylus avellana HOM05D003268 ORTHO05D003719 5.2e-22 109.4 167 40.1
THA.LOC104816841 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 5.2e-22 109.4 158 40.5
Glyma.17G041900 Glycine max HOM05D003268 ORTHO05D003719 6.7e-22 109.0 187 38.0
TAR633G0292 Trochodendron aralioides HOM05D003268 ORTHO05D003719 6.7e-22 109.0 173 38.2
CiPaw.07G035600 Carya illinoinensis HOM05D003268 ORTHO05D003719 1.1e-21 108.2 187 38.0
AL1G20040 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 1.5e-21 107.8 173 39.9
SalBow5G1243 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.6e-21 107.1 153 39.9
Carub.0001s0886 Capsella rubella HOM05D003268 ORTHO05D003719 4.4e-21 106.3 177 41.2
Oeu023377.1 Olea europaea HOM05D003268 ORTHO05D003719 4.4e-21 106.3 168 39.3
Sc16g0009390 Simmondsia chinensis HOM05D003268 ORTHO05D003719 4.4e-21 106.3 174 37.4
Glyma.13G118100 Glycine max HOM05D003268 ORTHO05D003719 5.7e-21 105.9 182 36.8
Nitab4.5_0002485g0060 Nicotiana tabacum HOM05D003268 ORTHO05D003719 5.7e-21 105.9 184 35.3
Oeu023379.1 Olea europaea HOM05D003268 ORTHO05D003719 5.7e-21 105.9 168 39.3
Potri.008G206600 Populus trichocarpa HOM05D003268 ORTHO05D003719 7.4e-21 105.5 138 46.4
Oeu016542.1 Olea europaea HOM05D003268 ORTHO05D003719 9.7e-21 105.1 202 36.6
VMungo1215G0793 Vigna mungo HOM05D003268 ORTHO05D003719 9.7e-21 105.1 165 41.2
Sabra08G0150300 Salix brachista HOM05D003268 ORTHO05D003719 1.7e-20 104.4 138 45.7
SHI00050 Sapria himalayana HOM05D002272 ORTHO05D005405 1.7e-20 104.4 183 37.7
RcHm_v2.0_Chr4g0427521 Rosa chinensis HOM05D003268 ORTHO05D003719 2.2e-20 104.0 164 38.4
Ciclev10005819m.g Citrus clementina HOM05D003268 ORTHO05D003719 3.7e-20 103.2 175 37.7
RcHm_v2.0_Chr3g0458411 Rosa chinensis HOM05D003268 ORTHO05D003719 3.7e-20 103.2 167 36.5
THA.LOC104821812 Tarenaya hassleriana HOM05D003268 ORTHO05D003719 3.7e-20 103.2 132 44.7
Aa31LG8G4410 Aethionema arabicum HOM05D002272 ORTHO05D005405 4.8e-20 102.8 180 38.3
FvH4_6g08440 Fragaria vesca HOM05D003268 ORTHO05D003719 8.2e-20 102.1 173 38.2
FAN14G0797 Fragaria x ananassa HOM05D003268 ORTHO05D003719 8.2e-20 102.1 173 38.2
TWI56G0501 Tripterygium wilfordii HOM05D003268 ORTHO05D003719 1.1e-19 101.7 160 39.4
HPP92_002632 Vanilla planifolia HOM05D004842 ORTHO05D005929 1.4e-19 101.3 149 40.9
MSTRG.16427 Avicennia marina HOM05D003268 ORTHO05D003719 1.8e-19 100.9 167 38.3
Lj5P319T26 Lonicera japonica HOM05D003268 ORTHO05D003719 1.8e-19 100.9 154 40.3
Medtr1g484850 Medicago truncatula HOM05D003268 ORTHO05D003719 1.8e-19 100.9 167 36.5
Solyc03g114270.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 1.8e-19 100.9 137 40.9
Sopen03g033360 Solanum pennellii HOM05D003268 ORTHO05D003796 1.8e-19 100.9 137 40.9
vmacro01600 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.8e-19 100.9 177 40.1
Cfa015729 Carpinus fangiana HOM05D003268 ORTHO05D003719 3.1e-19 100.1 150 40.0
Rhsim11G0103200 Rhododendron simsii HOM05D003268 ORTHO05D003719 4.1e-19 99.8 175 38.9
CARHR009490 Cardamine hirsuta HOM05D003268 ORTHO05D003719 7.0e-19 99.0 169 35.5
PGSC0003DMG400024495 Solanum tuberosum HOM05D003268 ORTHO05D003719 7.0e-19 99.0 137 39.4
PGSC0003DMG401019388 Solanum tuberosum HOM05D003268 ORTHO05D003719 9.1e-19 98.6 172 36.0
Lj4g0025064 Lotus japonicus HOM05D003268 ORTHO05D003719 1.2e-18 98.2 178 36.5
Prupe.1G105300 Prunus persica HOM05D003268 ORTHO05D003719 1.2e-18 98.2 126 39.7
A06p06210 Brassica napus HOM05D003268 ORTHO05D003719 1.6e-18 97.8 169 38.5
BraA06t23832Z Brassica rapa HOM05D003268 ORTHO05D003719 1.6e-18 97.8 169 38.5
Hma1.2p1_0759F.1_g213940 Hydrangea macrophylla HOM05D003268 ORTHO05D003719 1.6e-18 97.8 189 34.9
Sp1g08120 Schrenkiella parvula HOM05D003268 ORTHO05D003719 1.6e-18 97.8 172 38.4
Cpa.g.sc48.222 Carica papaya HOM05D003268 ORTHO05D003719 2.0e-18 97.4 175 36.0
Thhalv10008580m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 2.0e-18 97.4 169 36.7
Sopen10g005750 Solanum pennellii HOM05D003268 ORTHO05D003719 2.0e-18 97.4 156 37.8
Actinidia11688 Actinidia chinensis HOM05D003268 ORTHO05D003719 2.6e-18 97.1 147 40.1
C05p07520 Brassica napus HOM05D003268 ORTHO05D003719 2.6e-18 97.1 159 38.4
C08p49440 Brassica napus HOM05D003268 ORTHO05D003719 2.6e-18 97.1 203 36.0
BolC5t29506H Brassica oleracea HOM05D003268 ORTHO05D003719 2.6e-18 97.1 159 38.4
Ca_10197_v3 Cicer arietinum L. HOM05D003268 ORTHO05D003719 2.6e-18 97.1 194 36.1
FAN02G3445 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.6e-18 97.1 205 37.1
Nitab4.5_0000039g0190 Nicotiana tabacum HOM05D003268 ORTHO05D003719 2.6e-18 97.1 165 37.0
Solyc10g011990.1 Solanum lycopersicum HOM05D003268 ORTHO05D003719 3.5e-18 96.7 156 37.8
MSTRG.20352 Avicennia marina HOM05D003268 ORTHO05D003719 4.5e-18 96.3 153 36.6
MD16G1136300 Malus domestica HOM05D003268 ORTHO05D003719 4.5e-18 96.3 172 34.9
QL03p010269 Quercus lobata HOM05D003268 ORTHO05D003719 4.5e-18 96.3 153 37.3
QL03p010503 Quercus lobata HOM05D003268 ORTHO05D003719 4.5e-18 96.3 153 37.3
Phvul.003G123200 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 5.9e-18 95.9 165 39.4
Nitab4.5_0001808g0030 Nicotiana tabacum HOM05D003268 ORTHO05D003719 7.7e-18 95.5 155 37.4
unitig_8.g4507 Utricularia gibba HOM05D003268 ORTHO05D003719 1.3e-17 94.7 173 35.8
SalBow4G1159 Salvia bowleyana HOM05D003268 ORTHO05D003719 2.2e-17 94.0 212 33.5
HPP92_012769 Vanilla planifolia HOM05D003268 ORTHO05D003719 2.2e-17 94.0 179 36.3
PGSC0003DMG400044873 Solanum tuberosum HOM05D003268 ORTHO05D003719 2.9e-17 93.6 171 36.3
TPR.G2590 Trifolium pratense HOM05D003268 ORTHO05D003719 3.8e-17 93.2 162 38.9
A09p65470 Brassica napus HOM05D003268 ORTHO05D003719 6.5e-17 92.4 212 35.4
BraA09t41892Z Brassica rapa HOM05D003268 ORTHO05D003719 6.5e-17 92.4 212 35.4
Aqoxy5G02799 Aquilegia oxysepala HOM05D003268 ORTHO05D003719 1.5e-16 91.3 197 32.5
HanXRQChr09g0248281 Helianthus annuus HOM05D003268 ORTHO05D003719 1.5e-16 91.3 191 37.2
Atru.chr12.1545 Acer truncatum HOM05D003268 ORTHO05D003719 1.9e-16 90.9 157 38.9
BcaC09g48702 Brassica carinata HOM05D003268 ORTHO05D003719 1.9e-16 90.9 185 34.1
C01p46780 Brassica napus HOM05D003268 ORTHO05D003719 1.9e-16 90.9 185 34.1
BolC1t04651H Brassica oleracea HOM05D003268 ORTHO05D003719 1.9e-16 90.9 185 34.1
MD13G1139400 Malus domestica HOM05D003268 ORTHO05D003719 1.9e-16 90.9 172 34.9
Migut.B00880 Erythranthe guttata HOM05D003268 ORTHO05D003719 2.5e-16 90.5 179 34.6
SGA_v2.0_scaffold22G09705 Striga asiatica HOM05D003268 ORTHO05D003719 3.2e-16 90.1 190 33.2
Psat6g155480 Pisum sativum HOM05D003268 ORTHO05D003719 7.2e-16 89.0 173 35.3
FAN09G1400 Fragaria x ananassa HOM05D003268 ORTHO05D003719 2.7e-15 87.0 201 33.3
Lalb_Chr02g0147571 Lupinus albus HOM05D003268 ORTHO05D003719 2.7e-15 87.0 158 36.7
Phvul.007G204700 Phaseolus vulgaris HOM05D003268 ORTHO05D003719 3.6e-15 86.7 195 30.8
Sp3g15630 Schrenkiella parvula HOM05D003268 ORTHO05D003719 3.6e-15 86.7 202 35.1
BolC8t48925H Brassica oleracea HOM05D003268 ORTHO05D003719 6.1e-15 85.9 165 37.0
BraA08t35363Z Brassica rapa HOM05D003268 ORTHO05D003719 8.0e-15 85.5 188 32.4
Thhalv10022081m.g Eutrema salsugineum HOM05D003268 ORTHO05D003719 8.0e-15 85.5 201 33.8
C08p00580 Brassica napus HOM05D003268 ORTHO05D003719 1.8e-14 84.3 169 36.1
A08p34520 Brassica napus HOM05D003268 ORTHO05D003719 6.7e-14 82.4 192 31.8
DCAR_001893 Daucus carota HOM05D003268 ORTHO05D003719 6.7e-14 82.4 181 35.9
Migut.B00893 Erythranthe guttata HOM05D003268 ORTHO05D003719 6.7e-14 82.4 152 32.9
Lalb_Chr06g0167311 Lupinus albus HOM05D003268 ORTHO05D003719 6.7e-14 82.4 202 31.7
BcaC07g38514 Brassica carinata HOM05D003268 ORTHO05D003719 1.5e-13 81.3 160 35.6
BolC8t52481H Brassica oleracea HOM05D003268 ORTHO05D003719 2.0e-13 80.9 157 35.7
Glyma.20G092502 Glycine max HOM05D003268 ORTHO05D003719 3.3e-13 80.1 199 30.7
A01p36890 Brassica napus HOM05D003268 ORTHO05D003719 4.4e-13 79.7 186 31.2
BraA01t03748Z Brassica rapa HOM05D003268 ORTHO05D003719 4.4e-13 79.7 186 30.6
BraA08t35364Z Brassica rapa HOM05D003268 ORTHO05D003719 4.4e-13 79.7 169 34.9
Glyma.10G143800 Glycine max HOM05D003268 ORTHO05D003719 4.4e-13 79.7 189 30.2
VMungo0720G1780 Vigna mungo HOM05D003268 ORTHO05D003719 5.7e-13 79.3 181 30.4
BcaC09g48706 Brassica carinata HOM05D003268 ORTHO05D003719 7.5e-13 79.0 157 32.5
C08p12950 Brassica napus HOM05D003268 ORTHO05D003719 7.5e-13 79.0 160 36.2
BolC1t04640H Brassica oleracea HOM05D003268 ORTHO05D003719 7.5e-13 79.0 157 32.5
HanXRQChr10g0294291 Helianthus annuus HOM05D003268 ORTHO05D003719 7.5e-13 79.0 176 31.2
BcaB04g20839 Brassica carinata HOM05D003268 ORTHO05D003719 3.7e-12 76.6 160 34.4
C01p46720 Brassica napus HOM05D003268 ORTHO05D003719 6.3e-12 75.9 151 31.8
ECA240G0886 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.4e-11 74.7 170 31.8
HanXRQChr09g0250221 Helianthus annuus HOM05D003268 ORTHO05D003719 1.8e-11 74.3 163 35.0
BcaB06g25842 Brassica carinata HOM05D003268 ORTHO05D003719 2.4e-11 73.9 199 31.7
A08p34530 Brassica napus HOM05D003268 ORTHO05D003719 5.3e-11 72.8 169 32.0
Carub.0003s1718 Capsella rubella HOM05D003268 ORTHO05D003719 7.0e-11 72.4 178 32.0
Actinidia17741 Actinidia chinensis HOM05D003268 ORTHO05D003719 1.2e-10 71.6 102 41.2
CARHR092780 Cardamine hirsuta HOM05D003268 ORTHO05D003719 1.2e-10 71.6 209 28.2
ECA234G2755 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.2e-10 71.6 148 33.8
AT3G17460 Arabidopsis thaliana HOM05D003268 ORTHO05D003719 7.7e-10 68.9 178 31.5
AL3G30540 Arabidopsis lyrata HOM05D003268 ORTHO05D003719 2.9e-09 67.0 150 34.0
ATR0796G330 Amborella trichopoda HOM05D003268 ORTHO05D003719 5.5e-08 62.8 170 29.4
ECA236G0017 Erigeron canadensis HOM05D003268 ORTHO05D003719 1.2e-07 61.6 142 31.0
vmacro22837 Vaccinium macrocarpon HOM05D003268 ORTHO05D003719 1.2e-07 61.6 111 41.4
unitig_578.g15945 Utricularia gibba HOM05D003268 ORTHO05D003719 2.3e-06 57.4 65 40.0


User provided reference genes

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