Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001414 Sechium edule HOM05D003735 ORTHO05D004550 2.2e-210 735.3 362 100.0
ClCG05G010320 Citrullus lanatus HOM05D003735 ORTHO05D004550 1.2e-195 686.4 361 92.0
MELO3C019550.2 Cucumis melo HOM05D003735 ORTHO05D004550 2.5e-190 668.7 361 88.9
CsaV3_3G018170 Cucumis sativus L. HOM05D003735 ORTHO05D004550 4.3e-190 667.9 361 88.9
COL.COLO4_32583 Corchorus olitorius HOM05D003735 ORTHO05D004550 4.8e-173 611.3 360 80.0
Atru.chr5.2510 Acer truncatum HOM05D003735 ORTHO05D004550 8.2e-173 610.5 360 80.3
Gohir.A12G021500 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.1e-172 610.1 360 79.4
CANSAT25G2742 Cannabis sativa HOM05D003735 ORTHO05D004550 2.4e-172 609.0 362 79.3
Cfa004592 Carpinus fangiana HOM05D003735 ORTHO05D004550 3.1e-172 608.6 360 79.7
Ciclev10028518m.g Citrus clementina HOM05D003735 ORTHO05D004550 2.0e-171 605.9 359 79.4
Thecc.02G109200 Theobroma cacao HOM05D003735 ORTHO05D004550 2.6e-171 605.5 356 80.1
Gorai.008G022500 Gossypium raimondii HOM05D003735 ORTHO05D004550 3.4e-171 605.1 360 78.6
Phvul.007G040800 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 4.5e-171 604.7 358 79.3
arahy.Tifrunner.gnm1.ann1.SBY3PD Arachis hypogaea HOM05D003735 ORTHO05D004550 5.9e-171 604.4 360 78.9
Medtr1g107235 Medicago truncatula HOM05D003735 ORTHO05D004550 7.7e-171 604.0 358 79.9
TPR.G3239 Trifolium pratense HOM05D003735 ORTHO05D004550 7.7e-171 604.0 358 79.1
Glyma.10G261300 Glycine max HOM05D003735 ORTHO05D004550 1.0e-170 603.6 358 78.8
Gohir.D12G022000 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.0e-170 603.6 360 78.3
Glyma.20G129700 Glycine max HOM05D003735 ORTHO05D004550 1.3e-170 603.2 358 79.3
Psat6g217600 Pisum sativum HOM05D003735 ORTHO05D004550 1.3e-170 603.2 359 79.1
Thecc.02G109600 Theobroma cacao HOM05D003735 ORTHO05D004550 1.3e-170 603.2 377 76.7
VMungo0720G1863 Vigna mungo HOM05D003735 ORTHO05D004550 1.3e-170 603.2 358 79.6
arahy.Tifrunner.gnm1.ann1.28YLK9 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.7e-170 602.8 360 78.6
Dinv15769 Davidia involucrata HOM05D003735 ORTHO05D004550 3.8e-170 601.7 361 77.3
Rhsim11G0159300 Rhododendron simsii HOM05D003735 ORTHO05D004550 3.8e-170 601.7 361 77.8
CiPaw.05G012200 Carya illinoinensis HOM05D003735 ORTHO05D004550 5.0e-170 601.3 360 78.6
Ca_11068_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 6.5e-170 600.9 358 79.1
Lj9A323T50 Lonicera japonica HOM05D003735 ORTHO05D004550 8.5e-170 600.5 361 78.9
Potri.009G094800 Populus trichocarpa HOM05D003735 ORTHO05D004550 1.4e-169 599.7 361 77.8
Duzib248G1182 Durio zibethinus HOM05D003735 ORTHO05D004550 1.9e-169 599.4 360 78.1
Sabra09G0073100 Salix brachista HOM05D003735 ORTHO05D004550 2.5e-169 599.0 361 78.1
Hund06312 Selenicereus undatus HOM05D003735 ORTHO05D004550 2.5e-169 599.0 361 77.0
arahy.Tifrunner.gnm1.ann1.HR3ZI9 Arachis hypogaea HOM05D003735 ORTHO05D004550 7.2e-169 597.4 360 77.8
Lj9C323T5 Lonicera japonica HOM05D003735 ORTHO05D004550 7.2e-169 597.4 361 78.7
CSS0013486 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 9.4e-169 597.0 360 77.2
Lj5g0001181 Lotus japonicus HOM05D003735 ORTHO05D004550 9.4e-169 597.0 359 78.0
Lalb_Chr02g0145261 Lupinus albus HOM05D003735 ORTHO05D004550 9.4e-169 597.0 358 78.2
Phvul.007G040700 Phaseolus vulgaris HOM05D003735 ORTHO05D004550 9.4e-169 597.0 358 78.5
RcHm_v2.0_Chr6g0254911 Rosa chinensis HOM05D003735 ORTHO05D004550 9.4e-169 597.0 361 78.1
AUR62025585 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.2e-168 596.7 361 75.3
CSS0002879 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 1.6e-168 596.3 356 77.8
Manes.07G071116 Manihot esculenta HOM05D003735 ORTHO05D004550 2.1e-168 595.9 356 77.8
Migut.N01162 Erythranthe guttata HOM05D003735 ORTHO05D004550 2.7e-168 595.5 360 78.1
Rhsim11G0159400 Rhododendron simsii HOM05D003735 ORTHO05D004550 2.7e-168 595.5 361 76.5
Actinidia00406 Actinidia chinensis HOM05D003735 ORTHO05D004550 3.6e-168 595.1 360 76.7
Duzib132G0856 Durio zibethinus HOM05D003735 ORTHO05D004550 4.6e-168 594.7 382 75.1
Gorai.008G022400 Gossypium raimondii HOM05D003735 ORTHO05D004550 4.6e-168 594.7 360 77.5
Prupe.8G136000 Prunus persica HOM05D003735 ORTHO05D004550 4.6e-168 594.7 361 78.4
CiPaw.05G012300 Carya illinoinensis HOM05D003735 ORTHO05D004550 6.1e-168 594.3 360 78.1
Cc02_g19320 Coffea canephora HOM05D003735 ORTHO05D004550 6.1e-168 594.3 358 77.9
Haze_10190 Corylus avellana HOM05D003735 ORTHO05D004550 6.1e-168 594.3 381 75.3
RcHm_v2.0_Chr2g0122061 Rosa chinensis HOM05D003735 ORTHO05D004550 6.1e-168 594.3 361 77.8
EL10Ac9g22264 Beta vulgaris HOM05D003735 ORTHO05D004550 1.0e-167 593.6 361 76.5
MD10G1098700 Malus domestica HOM05D003735 ORTHO05D004550 1.0e-167 593.6 358 79.1
QL11p033367 Quercus lobata HOM05D003735 ORTHO05D004550 1.4e-167 593.2 360 77.5
Manes.07G071000 Manihot esculenta HOM05D003735 ORTHO05D004550 2.3e-167 592.4 357 77.3
Manes.07G071100 Manihot esculenta HOM05D003735 ORTHO05D004550 2.3e-167 592.4 356 77.2
C06p04320 Brassica napus HOM05D003735 ORTHO05D004550 3.0e-167 592.0 359 76.3
BolC6t35561H Brassica oleracea HOM05D003735 ORTHO05D004550 3.0e-167 592.0 359 76.3
FvH4_2g05040 Fragaria vesca HOM05D003735 ORTHO05D004550 5.1e-167 591.3 361 77.8
Haze_10183 Corylus avellana HOM05D003735 ORTHO05D004550 6.7e-167 590.9 360 77.5
Sabra09G0072900 Salix brachista HOM05D003735 ORTHO05D004550 6.7e-167 590.9 361 77.6
SalBow3G2544 Salvia bowleyana HOM05D003735 ORTHO05D004550 6.7e-167 590.9 361 77.0
BcaC08g43148 Brassica carinata HOM05D003735 ORTHO05D004550 8.8e-167 590.5 359 76.0
Carub.0001s3903 Capsella rubella HOM05D003735 ORTHO05D004550 8.8e-167 590.5 359 76.9
Eucgr.I01098 Eucalyptus grandis HOM05D003735 ORTHO05D004550 1.1e-166 590.1 358 77.4
Dinv42198 Davidia involucrata HOM05D003735 ORTHO05D004550 2.6e-166 589.0 359 76.6
PGR142G3714 Punica granatum HOM05D003735 ORTHO05D004550 2.6e-166 589.0 361 77.0
AT1G49820 Arabidopsis thaliana HOM05D003735 ORTHO05D004550 3.3e-166 588.6 359 76.9
MD10G1147300 Malus domestica HOM05D003735 ORTHO05D004550 3.3e-166 588.6 358 78.5
Nn5g30431 Nelumbo nucifera HOM05D003735 ORTHO05D004550 3.3e-166 588.6 360 75.6
SGA_v2.0_scaffold393G50713 Striga asiatica HOM05D003735 ORTHO05D004550 3.3e-166 588.6 358 76.0
Cpa.g.sc106.101 Carica papaya HOM05D003735 ORTHO05D004550 4.4e-166 588.2 360 76.1
A06p03780 Brassica napus HOM05D003735 ORTHO05D004550 5.7e-166 587.8 359 75.8
BraA06t23583Z Brassica rapa HOM05D003735 ORTHO05D004550 5.7e-166 587.8 359 75.8
CARHR039880 Cardamine hirsuta HOM05D003735 ORTHO05D004550 5.7e-166 587.8 359 76.3
Ca_11064_v3 Cicer arietinum L. HOM05D003735 ORTHO05D004550 9.7e-166 587.0 358 76.8
Thhalv10011522m.g Eutrema salsugineum HOM05D003735 ORTHO05D004550 1.3e-165 586.6 359 76.6
AUR62001369 Chenopodium quinoa HOM05D003735 ORTHO05D004550 1.7e-165 586.3 361 74.5
Prupe.7G233900 Prunus persica HOM05D003735 ORTHO05D004550 2.2e-165 585.9 358 76.3
THA.LOC104825376 Tarenaya hassleriana HOM05D003735 ORTHO05D004550 2.8e-165 585.5 360 75.6
GSVIVG01037915001 Vitis vinifera HOM05D003735 ORTHO05D004550 2.8e-165 585.5 358 77.4
MSTRG.5338 Avicennia marina HOM05D003735 ORTHO05D004550 4.8e-165 584.7 356 76.7
BcaB07g33662 Brassica carinata HOM05D003735 ORTHO05D004550 4.8e-165 584.7 359 75.5
FAN27G1495 Fragaria x ananassa HOM05D003735 ORTHO05D004550 4.8e-165 584.7 377 74.8
Psat6g217400 Pisum sativum HOM05D003735 ORTHO05D004550 4.8e-165 584.7 359 76.0
Sp1g36700 Schrenkiella parvula HOM05D003735 ORTHO05D004550 4.8e-165 584.7 359 75.2
Potri.001G299700 Populus trichocarpa HOM05D003735 ORTHO05D004550 6.3e-165 584.3 361 75.9
vmacro01999 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 6.3e-165 584.3 376 74.5
GSVIVG01037913001 Vitis vinifera HOM05D003735 ORTHO05D004550 1.8e-164 582.8 358 77.1
TWI75G1082 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 4.1e-164 581.6 356 77.2
PGSC0003DMG400025861 Solanum tuberosum HOM05D003735 ORTHO05D004550 5.3e-164 581.3 361 76.2
Solyc01g107550.3 Solanum lycopersicum HOM05D003735 ORTHO05D004550 1.2e-163 580.1 361 75.3
MBI16_g19654_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D004550 1.5e-163 579.7 359 76.9
FAN20G1457 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-163 579.3 377 73.7
FAN24G3115 Fragaria x ananassa HOM05D003735 ORTHO05D004550 2.0e-163 579.3 361 75.6
Sopen01g049750 Solanum pennellii HOM05D003735 ORTHO05D004550 2.0e-163 579.3 361 75.3
TWI79G0069 Tripterygium wilfordii HOM05D003735 ORTHO05D004550 2.0e-163 579.3 360 76.4
AL1G57300 Arabidopsis lyrata HOM05D003735 ORTHO05D004550 3.4e-163 578.6 358 76.0
arahy.Tifrunner.gnm1.ann1.678ZZJ Arachis hypogaea HOM05D003735 ORTHO05D004550 3.4e-163 578.6 393 71.2
Peaxi162Scf00016g02426 Petunia axillaris HOM05D003735 ORTHO05D004550 5.0e-162 574.7 358 75.1
FAN15G3608 Fragaria x ananassa HOM05D003735 ORTHO05D004550 6.5e-162 574.3 377 73.5
Aa31LG10G4250 Aethionema arabicum HOM05D003735 ORTHO05D004550 8.5e-162 573.9 359 75.2
Os04g0669800 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 8.5e-162 573.9 361 74.5
Hma1.2p1_0796F.1_g219280 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.2e-161 572.0 359 74.9
Nitab4.5_0011634g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.2e-161 572.0 373 73.5
TPR.G3238 Trifolium pratense HOM05D003735 ORTHO05D004550 4.2e-161 571.6 341 78.3
CAN.G606.4 Capsicum annuum HOM05D003735 ORTHO05D004550 2.1e-160 569.3 360 75.3
AUR62039068 Chenopodium quinoa HOM05D003735 ORTHO05D004550 6.1e-160 567.8 360 72.8
unitig_747.g21222 Utricularia gibba HOM05D003735 ORTHO05D004550 6.1e-160 567.8 358 73.5
HanXRQChr10g0296961 Helianthus annuus HOM05D003735 ORTHO05D004550 7.9e-160 567.4 355 74.4
Os04g0669900 Oryza sativa ssp. japonica HOM05D003735 ORTHO05D004550 7.9e-160 567.4 357 73.9
HPP92_011617 Vanilla planifolia HOM05D003735 ORTHO05D004550 1.8e-159 566.2 358 74.0
DCAR_021982 Daucus carota HOM05D003735 ORTHO05D004550 3.0e-159 565.5 359 73.8
Gohir.D12G022100 Gossypium hirsutum HOM05D003735 ORTHO05D004550 3.9e-159 565.1 360 74.7
Zm00001eb433310 Zea mays HOM05D003735 ORTHO05D004550 5.2e-159 564.7 361 72.9
Oeu029527.5 Olea europaea HOM05D003735 ORTHO05D004550 3.3e-158 562.0 401 67.8
ECA234G0132 Erigeron canadensis HOM05D003735 ORTHO05D004550 5.7e-158 561.2 356 72.2
Lsat_1_v5_gn_5_115400 Lactuca sativa HOM05D003735 ORTHO05D004550 9.7e-158 560.5 355 73.5
MSTRG.27746 Avicennia marina HOM05D003735 ORTHO05D004550 2.2e-157 559.3 357 72.5
Eucgr.I01100 Eucalyptus grandis HOM05D003735 ORTHO05D004550 6.3e-157 557.8 341 76.5
PSO675G8377 Papaver somniferum HOM05D003735 ORTHO05D004550 2.4e-156 555.8 360 72.5
CDE02G0578 Ceratophyllum demersum HOM05D003735 ORTHO05D004550 3.1e-156 555.4 357 72.3
TPR.G19078 Trifolium pratense HOM05D003735 ORTHO05D004550 4.1e-156 555.1 365 73.2
PSO541G1406 Papaver somniferum HOM05D003735 ORTHO05D004550 5.9e-155 551.2 360 73.1
Lalb_Chr09g0319561 Lupinus albus HOM05D003735 ORTHO05D004550 1.3e-154 550.1 359 71.9
VMungo1215G1247 Vigna mungo HOM05D003735 ORTHO05D004550 7.2e-153 544.3 359 70.8
CSS0020963 Camellia sinensis var. sinensis HOM05D003735 ORTHO05D004550 9.4e-153 543.9 356 73.6
ATR0589G073 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-151 540.4 356 70.8
MD10G1098200 Malus domestica HOM05D003735 ORTHO05D004550 3.3e-150 535.4 358 72.3
Oeu013756.1 Olea europaea HOM05D003735 ORTHO05D004550 1.3e-149 533.5 439 60.8
ECA232G2787 Erigeron canadensis HOM05D003735 ORTHO05D004550 4.5e-147 525.0 356 68.0
Ah.01g018310 Amaranthus hybridus HOM05D003735 ORTHO05D004550 8.5e-146 520.8 361 67.6
RcHm_v2.0_Chr6g0254921 Rosa chinensis HOM05D003735 ORTHO05D004550 1.8e-140 503.1 305 76.1
BcaC08g43149 Brassica carinata HOM05D003735 ORTHO05D004550 9.5e-137 490.7 359 67.4
SMO340G0152 Selaginella moellendorffii HOM05D003735 ORTHO05D004550 8.0e-136 487.6 360 63.6
Pp3c6_19060 Physcomitrium patens HOM05D003735 ORTHO05D004550 5.2e-135 485.0 357 64.1
DCAR_001652 Daucus carota HOM05D003735 ORTHO05D004550 1.2e-134 483.8 318 70.4
Mapoly0029s0020 Marchantia polymorpha HOM05D003735 ORTHO05D004550 1.5e-129 466.8 358 62.0
AagrBONN_evm.TU.Sc2ySwM_344.2850 Anthoceros agrestis HOM05D003735 ORTHO05D004550 3.3e-129 465.7 357 62.7
AUR62010319 Chenopodium quinoa HOM05D003735 ORTHO05D004550 4.4e-126 455.3 342 63.2
vmacro01998 Vaccinium macrocarpon HOM05D003735 ORTHO05D004550 8.0e-120 434.5 376 58.8
arahy.Tifrunner.gnm1.ann1.TAI6X1 Arachis hypogaea HOM05D003735 ORTHO05D004550 1.0e-119 434.1 309 68.3
QL11p033306 Quercus lobata HOM05D003735 ORTHO05D004550 2.2e-117 426.4 302 70.2
CBR_g23696 Chara braunii HOM05D003735 ORTHO05D004550 1.6e-115 420.2 373 53.6
Cfa004590 Carpinus fangiana HOM05D003735 ORTHO05D004550 1.1e-105 387.5 244 75.8
QL11p033359 Quercus lobata HOM05D003735 ORTHO05D004550 7.3e-105 384.8 224 80.8
arahy.Tifrunner.gnm1.ann1.Z6IW8Q Arachis hypogaea HOM05D003735 ORTHO05D004550 8.4e-101 371.3 235 74.5
Peaxi162Scf00152g00332 Petunia axillaris HOM05D003735 ORTHO05D004550 4.9e-93 345.5 234 68.8
Nitab4.5_0026736g0020 Nicotiana tabacum HOM05D003735 ORTHO05D004550 2.4e-92 343.2 198 79.8
Cre16.g673550 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D007494 1.2e-91 340.9 362 48.1
Nitab4.5_0001143g0070 Nicotiana tabacum HOM05D003735 ORTHO05D004550 4.6e-91 339.0 198 78.8
MCO11G261 Micromonas commoda HOM05D003735 ORTHO05D007494 7.8e-91 338.2 370 47.6
PRCOL_00000373 Prasinoderma coloniale HOM05D003735 ORTHO05D006943 1.3e-90 337.4 345 49.9
CBR_g12222 Chara braunii HOM05D003735 ORTHO05D004550 3.3e-89 332.8 446 40.1
Cc02_g18410 Coffea canephora HOM05D003735 ORTHO05D004550 1.5e-78 297.4 221 67.0
Glyma.01G244200 Glycine max HOM05D003735 ORTHO05D004550 6.7e-74 282.0 190 68.4
arahy.Tifrunner.gnm1.ann1.83SMNU Arachis hypogaea HOM05D003735 ORTHO05D004550 5.5e-68 262.3 226 61.1
Cc01_g17410 Coffea canephora HOM05D003735 ORTHO05D004550 1.6e-67 260.8 174 70.7
Hma1.2p1_1023F.1_g249070 Hydrangea macrophylla HOM05D003735 ORTHO05D004550 3.7e-64 249.6 258 52.3
Glyma.01G244132 Glycine max HOM05D003735 ORTHO05D004550 9.0e-63 245.0 155 74.8
Ciclev10029480m.g Citrus clementina HOM05D003735 ORTHO05D004550 7.6e-62 241.9 180 67.2
arahy.Tifrunner.gnm1.ann1.B546P6 Arachis hypogaea HOM05D003735 ORTHO05D004550 4.8e-56 222.6 167 65.3
Peaxi162Scf00152g00233 Petunia axillaris HOM05D003735 ORTHO05D004550 4.2e-52 209.5 229 48.5
ATR0589G125 Amborella trichopoda HOM05D003735 ORTHO05D004550 4.7e-51 206.1 118 79.7
QL11p033356 Quercus lobata HOM05D003735 ORTHO05D004550 4.7e-51 206.1 128 73.4
Nitab4.5_0001143g0030 Nicotiana tabacum HOM05D003735 ORTHO05D004550 3.3e-49 199.9 121 71.9
Aqoxy6G02845 Aquilegia oxysepala HOM05D003735 ORTHO05D004550 1.2e-46 191.4 127 71.7
Gohir.A13G043900 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.5e-46 191.0 337 37.4
Gohir.D13G042333 Gossypium hirsutum HOM05D003735 ORTHO05D004550 1.2e-43 181.4 343 36.7
ATR0589G120 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.1e-41 174.9 107 73.8
ATR0589G028 Amborella trichopoda HOM05D003735 ORTHO05D004550 1.0e-37 161.8 122 59.8
Gorai.013G047300 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.8e-31 141.0 130 57.7
TPR.G20408 Trifolium pratense HOM05D003735 ORTHO05D004550 2.0e-30 137.5 88 75.0
Gorai.013G047400 Gossypium raimondii HOM05D003735 ORTHO05D004550 1.8e-26 124.4 126 53.2
Nn4g25342 Nelumbo nucifera HOM05D003735 ORTHO05D004550 2.2e-24 117.5 71 73.2
MBI14_g39937_MAGBIO Magnolia biondii HOM05D003735 ORTHO05D022889 3.7e-24 116.7 66 77.3
TPR.G31649 Trifolium pratense HOM05D000067 ORTHO05D000097 2.2e-16 90.9 86 50.0
TPR.G13570 Trifolium pratense HOM05D003735 ORTHO05D004354 1.8e-15 87.8 94 45.7
TAR376G0098 Trochodendron aralioides HOM05D003735 ORTHO05D004550 7.5e-09 65.9 43 65.1
Cre07.g342900 Chlamydomonas reinhardtii HOM05D003735 ORTHO05D146703 2.9e-08 63.9 302 23.5
Sabra16G0188100 Salix brachista HOM05D003735 ORTHO05D349252 1.6e-06 58.2 35 68.6


User provided reference genes

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