Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001385 Sechium edule HOM05D005295 ORTHO05D005962 8.8e-128 460.3 233 100.0
ClCG11G017890 Citrullus lanatus HOM05D005295 ORTHO05D005962 2.3e-107 392.5 239 84.1
MELO3C025603.2 Cucumis melo HOM05D005295 ORTHO05D005962 3.8e-107 391.7 236 85.2
CsaV3_4G033520 Cucumis sativus L. HOM05D005295 ORTHO05D005962 5.6e-106 387.9 236 83.9
CiPaw.11G171800 Carya illinoinensis HOM05D005295 ORTHO05D005962 3.5e-84 315.5 233 68.7
Haze_09452 Corylus avellana HOM05D005295 ORTHO05D005962 1.9e-82 309.7 235 67.2
Lj3g0021836 Lotus japonicus HOM05D005295 ORTHO05D005962 4.3e-82 308.5 233 66.1
Lalb_Chr20g0109501 Lupinus albus HOM05D005295 ORTHO05D005962 9.5e-82 307.4 227 66.5
Cfa020562 Carpinus fangiana HOM05D005295 ORTHO05D005962 4.4e-79 298.5 237 65.0
CANSAT56G1083 Cannabis sativa HOM05D005295 ORTHO05D005962 1.7e-78 296.6 241 64.3
Hma1.2p1_0387F.1_g141920 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 3.8e-78 295.4 229 64.6
CSS0001236 Camellia sinensis var. sinensis HOM05D005295 ORTHO05D005962 1.1e-77 293.9 239 62.8
MD03G1231400 Malus domestica HOM05D005295 ORTHO05D005962 1.1e-77 293.9 233 63.9
Prupe.4G176600 Prunus persica HOM05D005295 ORTHO05D005962 1.9e-77 293.1 233 62.7
Sabra16G0260000 Salix brachista HOM05D005295 ORTHO05D005962 1.2e-76 290.4 227 66.5
Manes.03G106500 Manihot esculenta HOM05D005295 ORTHO05D005962 2.7e-76 289.3 232 65.5
Medtr2g078650 Medicago truncatula HOM05D005295 ORTHO05D005962 3.5e-76 288.9 228 65.4
Rhsim06G0201600 Rhododendron simsii HOM05D005295 ORTHO05D005962 4.6e-76 288.5 231 63.2
arahy.Tifrunner.gnm1.ann1.B1NQ7W Arachis hypogaea HOM05D005295 ORTHO05D005962 7.8e-76 287.7 233 63.1
VMungo1080G0752 Vigna mungo HOM05D005295 ORTHO05D005962 1.0e-75 287.3 233 63.5
arahy.Tifrunner.gnm1.ann1.3CLR9I Arachis hypogaea HOM05D005295 ORTHO05D005962 3.9e-75 285.4 233 62.2
Migut.M00784 Erythranthe guttata HOM05D005295 ORTHO05D005962 8.6e-75 284.3 237 64.6
GSVIVG01014296001 Vitis vinifera HOM05D005295 ORTHO05D005962 1.1e-74 283.9 228 60.5
Thecc.07G095500 Theobroma cacao HOM05D005295 ORTHO05D005962 1.5e-74 283.5 237 62.4
Sabra11G0101800 Salix brachista HOM05D005295 ORTHO05D005962 1.9e-74 283.1 229 63.8
Potri.011G116200 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.3e-74 282.0 227 65.2
Phvul.005G075000 Phaseolus vulgaris HOM05D005295 ORTHO05D005962 7.3e-74 281.2 233 62.2
Oeu019302.2 Olea europaea HOM05D005295 ORTHO05D005962 2.1e-73 279.6 243 62.6
Actinidia12794 Actinidia chinensis HOM05D005295 ORTHO05D005962 8.1e-73 277.7 234 62.0
Eucgr.F01159 Eucalyptus grandis HOM05D005295 ORTHO05D005962 8.1e-73 277.7 230 60.9
Glyma.13G273800 Glycine max HOM05D005295 ORTHO05D005962 8.1e-73 277.7 227 59.9
Gohir.A04G035200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 2.4e-72 276.2 239 60.3
Cc05_g11790 Coffea canephora HOM05D005295 ORTHO05D005962 3.1e-72 275.8 245 58.0
Sopen12g005670 Solanum pennellii HOM05D005295 ORTHO05D005962 3.1e-72 275.8 237 59.5
Psat0s1402g0040 Pisum sativum HOM05D005295 ORTHO05D005962 4.0e-72 275.4 227 62.1
THA.LOC104811877 Tarenaya hassleriana HOM05D005295 ORTHO05D005962 4.0e-72 275.4 227 59.0
Lj8A154T78 Lonicera japonica HOM05D005295 ORTHO05D005962 5.2e-72 275.0 259 56.0
Solyc12g013910.2 Solanum lycopersicum HOM05D005295 ORTHO05D005962 6.9e-72 274.6 237 59.5
Gorai.009G376000 Gossypium raimondii HOM05D005295 ORTHO05D005962 8.9e-72 274.2 239 60.3
TWI38G0013 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 8.9e-72 274.2 238 60.9
PGSC0003DMG400015366 Solanum tuberosum HOM05D005295 ORTHO05D005962 2.0e-71 273.1 237 58.6
TWI39G0015 Tripterygium wilfordii HOM05D005295 ORTHO05D005962 2.0e-71 273.1 237 59.5
Potri.001G396900 Populus trichocarpa HOM05D005295 ORTHO05D005962 4.4e-71 271.9 226 65.0
Duzib213G0204 Durio zibethinus HOM05D005295 ORTHO05D005962 1.3e-70 270.4 232 62.1
Lsat_1_v5_gn_5_128440 Lactuca sativa HOM05D005295 ORTHO05D005962 1.7e-70 270.0 248 55.6
PGR083G0729 Punica granatum HOM05D005295 ORTHO05D005962 1.7e-70 270.0 225 60.4
Aa31LG5G9970 Aethionema arabicum HOM05D005295 ORTHO05D005962 1.9e-69 266.5 230 57.0
Cpa.g.sc622.2 Carica papaya HOM05D005295 ORTHO05D005962 3.2e-69 265.8 227 60.8
COL.COLO4_36711 Corchorus olitorius HOM05D005295 ORTHO05D005962 3.2e-69 265.8 233 59.2
ECA234G3281 Erigeron canadensis HOM05D005295 ORTHO05D005962 4.2e-69 265.4 240 55.8
SGA_v2.0_scaffold73G24237 Striga asiatica HOM05D005295 ORTHO05D005962 1.2e-68 263.8 231 58.9
SalBow8G4458 Salvia bowleyana HOM05D005295 ORTHO05D005962 1.6e-68 263.5 238 58.0
Ca_03531_v3 Cicer arietinum L. HOM05D005295 ORTHO05D005962 2.1e-68 263.1 234 59.8
Thhalv10026112m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 2.1e-68 263.1 240 55.4
Ah.06g184530 Amaranthus hybridus HOM05D005295 ORTHO05D005962 7.8e-68 261.2 253 53.0
Carub.0007s1331 Capsella rubella HOM05D005295 ORTHO05D005962 1.0e-67 260.8 237 56.1
SGA_v2.0_scaffold34G13800 Striga asiatica HOM05D005295 ORTHO05D005962 1.0e-67 260.8 228 58.3
HanXRQChr12g0361161 Helianthus annuus HOM05D005295 ORTHO05D005962 6.6e-67 258.1 245 53.1
AL7G25230 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 8.7e-67 257.7 240 55.4
Sp7g25480 Schrenkiella parvula HOM05D005295 ORTHO05D005962 1.1e-66 257.3 240 54.6
RcHm_v2.0_Chr5g0032761 Rosa chinensis HOM05D005295 ORTHO05D005962 1.9e-66 256.5 238 55.5
BcaNung06688 Brassica carinata HOM05D005295 ORTHO05D005962 7.3e-66 254.6 242 52.9
C01p23710 Brassica napus HOM05D005295 ORTHO05D005962 7.3e-66 254.6 241 53.1
A01p18770 Brassica napus HOM05D005295 ORTHO05D005962 1.3e-65 253.8 242 53.3
BcaNung06687 Brassica carinata HOM05D005295 ORTHO05D005962 1.6e-65 253.4 241 53.1
AT4G27540 Arabidopsis thaliana HOM05D005295 ORTHO05D005962 2.1e-65 253.1 240 53.8
Aqoxy1G02337 Aquilegia oxysepala HOM05D005295 ORTHO05D005962 3.6e-65 252.3 233 56.2
Ciclev10009383m.g Citrus clementina HOM05D005295 ORTHO05D005962 3.6e-65 252.3 225 58.7
BolC1t02323H Brassica oleracea HOM05D005295 ORTHO05D005962 6.2e-65 251.5 241 52.7
Nn1g04175 Nelumbo nucifera HOM05D005295 ORTHO05D005962 8.1e-65 251.1 240 54.2
CAN.G213.18 Capsicum annuum HOM05D005295 ORTHO05D005962 1.8e-64 250.0 254 53.1
CARHR235220 Cardamine hirsuta HOM05D005295 ORTHO05D005962 1.8e-64 250.0 241 53.5
Ciclev10009380m.g Citrus clementina HOM05D005295 ORTHO05D005962 2.4e-64 249.6 225 57.8
Gohir.D05G348200 Gossypium hirsutum HOM05D005295 ORTHO05D005962 3.1e-64 249.2 239 56.5
TPR.G7946 Trifolium pratense HOM05D005295 ORTHO05D005962 6.9e-64 248.1 231 57.1
FAN21G0215 Fragaria x ananassa HOM05D005295 ORTHO05D005962 3.4e-63 245.7 236 54.2
QL08p022700 Quercus lobata HOM05D005295 ORTHO05D005962 3.4e-63 245.7 347 43.8
EL10Ac4g08225 Beta vulgaris HOM05D005295 ORTHO05D005962 5.8e-63 245.0 248 50.8
BraA01t01821Z Brassica rapa HOM05D005295 ORTHO05D005962 7.6e-63 244.6 242 52.1
Nitab4.5_0000332g0010 Nicotiana tabacum HOM05D005295 ORTHO05D005962 7.6e-63 244.6 237 54.9
FAN25G2205 Fragaria x ananassa HOM05D005295 ORTHO05D005962 9.9e-63 244.2 236 53.8
PSO675G2991 Papaver somniferum HOM05D005295 ORTHO05D005962 9.9e-63 244.2 247 52.2
FvH4_3g19520 Fragaria vesca HOM05D005295 ORTHO05D005962 1.3e-62 243.8 236 53.8
Peaxi162Scf00000g00314 Petunia axillaris HOM05D005295 ORTHO05D005962 2.2e-62 243.0 248 52.8
Hund22882 Selenicereus undatus HOM05D005295 ORTHO05D005962 3.2e-61 239.2 253 49.8
DCAR_013119 Daucus carota HOM05D005295 ORTHO05D005962 6.0e-60 235.0 187 63.1
Sc16g0007150 Simmondsia chinensis HOM05D005295 ORTHO05D005962 6.0e-60 235.0 221 55.2
AUR62036172 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.0e-59 234.2 258 48.4
FAN11G0135 Fragaria x ananassa HOM05D005295 ORTHO05D005962 1.0e-59 234.2 233 53.6
unitig_0.g1149 Utricularia gibba HOM05D005295 ORTHO05D005962 1.0e-59 234.2 234 53.8
MBI02_g22345_MAGBIO Magnolia biondii HOM05D005295 ORTHO05D005962 1.3e-54 217.2 232 49.1
BolC2t07912H Brassica oleracea HOM05D005295 ORTHO05D005962 1.1e-53 214.2 227 48.5
MSTRG.6822 Avicennia marina HOM05D005295 ORTHO05D005962 1.9e-53 213.4 189 57.7
BcaC03g14369 Brassica carinata HOM05D005295 ORTHO05D005962 5.5e-53 211.8 227 48.0
Atru.chr2.2424 Acer truncatum HOM05D005295 ORTHO05D005962 2.7e-52 209.5 255 47.8
CDE05G1939 Ceratophyllum demersum HOM05D005295 ORTHO05D005962 6.0e-52 208.4 223 50.7
BcaB05g22086 Brassica carinata HOM05D005295 ORTHO05D005962 5.1e-51 205.3 219 48.4
C02p17850 Brassica napus HOM05D005295 ORTHO05D005962 1.5e-50 203.8 227 47.6
Zm00001eb231100 Zea mays HOM05D005295 ORTHO05D005962 3.3e-50 202.6 242 46.3
AUR62019458 Chenopodium quinoa HOM05D005295 ORTHO05D005962 1.6e-49 200.3 234 45.7
CDE05G3097 Ceratophyllum demersum HOM05D006331 ORTHO05D008043 2.8e-49 199.5 225 48.9
HPP92_003730 Vanilla planifolia HOM05D005295 ORTHO05D005962 8.2e-49 198.0 235 49.8
BcaC03g14372 Brassica carinata HOM05D005295 ORTHO05D005962 5.3e-48 195.3 229 46.7
BolC2t07916H Brassica oleracea HOM05D005295 ORTHO05D005962 5.3e-48 195.3 229 46.7
vmacro11885 Vaccinium macrocarpon HOM05D005295 ORTHO05D005962 6.0e-44 181.8 234 47.0
C02p17830 Brassica napus HOM05D005295 ORTHO05D005962 3.9e-43 179.1 194 47.4
Thhalv10015755m.g Eutrema salsugineum HOM05D005295 ORTHO05D005962 1.6e-41 173.7 205 45.9
A02p10710 Brassica napus HOM05D005295 ORTHO05D005962 3.1e-40 169.5 167 48.5
BraA02t06134Z Brassica rapa HOM05D005295 ORTHO05D005962 3.1e-40 169.5 167 48.5
ATR0150G019 Amborella trichopoda HOM05D005295 ORTHO05D005962 3.4e-39 166.0 232 40.9
Eucgr.F01198 Eucalyptus grandis HOM05D005295 ORTHO05D005962 2.2e-38 163.3 140 60.0
Dinv14935 Davidia involucrata HOM05D005295 ORTHO05D005962 1.0e-35 154.5 132 60.6
SEGI_06803 Sequoiadendron giganteum HOM05D005295 ORTHO05D005962 3.9e-35 152.5 221 37.6
Lj1C840T8 Lonicera japonica HOM05D005295 ORTHO05D005962 6.3e-33 145.2 127 61.4
Ciclev10010240m.g Citrus clementina HOM05D005295 ORTHO05D005962 6.9e-32 141.7 225 42.2
Os09g0134400 Oryza sativa ssp. japonica HOM05D005295 ORTHO05D005962 9.4e-29 131.3 240 37.1
SMO285G0011 Selaginella moellendorffii HOM05D005295 ORTHO05D005962 6.1e-28 128.6 231 32.5
Pp3c9_10810 Physcomitrium patens HOM05D005295 ORTHO05D005962 8.8e-27 124.8 235 33.2
MD06G1175000 Malus domestica HOM05D005295 ORTHO05D005962 4.8e-25 119.0 111 58.6
Mapoly0124s0020 Marchantia polymorpha HOM05D005295 ORTHO05D005962 1.1e-24 117.9 230 33.0
Dinv12314 Davidia involucrata HOM05D005295 ORTHO05D005962 1.7e-22 110.5 127 51.2
BcaNung07036 Brassica carinata HOM05D005295 ORTHO05D005962 3.3e-18 96.3 87 49.4
BcaB06g26783 Brassica carinata HOM05D005295 ORTHO05D005962 7.4e-18 95.1 82 59.8
Duzib268G1416 Durio zibethinus HOM05D005295 ORTHO05D005962 1.4e-16 90.9 208 35.6
Carub.0003s1487 Capsella rubella HOM05D005295 ORTHO05D005962 1.2e-15 87.8 171 33.9
Hma1.2p1_0387F.1_g141930 Hydrangea macrophylla HOM05D005295 ORTHO05D005962 2.7e-12 76.6 83 49.4
A01p38800 Brassica napus HOM05D005295 ORTHO05D005962 4.7e-12 75.9 122 37.7
BraA01t03927Z Brassica rapa HOM05D005295 ORTHO05D005962 4.7e-12 75.9 122 37.7
BcaB04g20941 Brassica carinata HOM05D001464 ORTHO05D005962 1.4e-11 74.3 146 34.9
BcaC09g48479 Brassica carinata HOM05D005295 ORTHO05D005962 2.3e-11 73.6 122 36.9
BolC1t04893H Brassica oleracea HOM05D005295 ORTHO05D005962 2.3e-11 73.6 122 36.9
C01p49340 Brassica napus HOM05D005295 ORTHO05D005962 8.8e-11 71.6 122 36.1
AL3G27610 Arabidopsis lyrata HOM05D005295 ORTHO05D005962 2.6e-10 70.1 127 34.6
Carub.0001s2750 Capsella rubella HOM05D005295 ORTHO05D005962 6.3e-09 65.5 52 61.5
AL1G49440 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-08 62.8 36 77.8
AL4G33490 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-08 62.8 36 77.8
AL6G44190 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-08 62.8 36 77.8
AL6G51010 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-08 62.8 36 77.8
AL7G20040 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 4.1e-08 62.8 36 77.8
Cc11_g09910 Coffea canephora HOM05D005295 ORTHO05D005962 9.1e-08 61.6 35 82.9
AL3G43900 Arabidopsis lyrata HOM05D021473 ORTHO05D005962 1.2e-07 61.2 36 75.0
BcaB05g22088 Brassica carinata HOM05D005295 ORTHO05D005962 1.0e-06 58.2 88 43.2
BcaB05g22090 Brassica carinata HOM05D005295 ORTHO05D005962 1.7e-06 57.4 89 39.3


User provided reference genes

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