Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 1.0e-235 819.7 420 100.0
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 3.4e-178 628.6 426 79.6
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 3.0e-174 615.5 433 76.2
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 5.6e-173 611.3 433 75.5
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 1.6e-156 556.6 428 69.2
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 6.2e-156 554.7 428 68.0
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.8e-155 553.1 422 70.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 2.9e-153 545.8 413 70.7
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.8e-153 545.4 428 69.2
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 4.9e-153 545.0 405 70.9
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 8.4e-153 544.3 410 69.5
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.9e-152 543.1 425 68.7
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 5.4e-152 541.6 422 69.4
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 3.5e-151 538.9 430 67.9
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 4.6e-151 538.5 433 68.1
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 1.7e-150 536.6 430 66.3
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 2.3e-150 536.2 416 68.0
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 6.6e-150 534.6 427 68.1
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 8.6e-150 534.3 431 67.3
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 2.5e-149 532.7 436 65.8
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 5.6e-149 531.6 425 67.3
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 7.3e-149 531.2 433 65.8
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.6e-148 530.0 442 65.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 2.0e-146 523.1 434 66.1
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 9.9e-146 520.8 427 67.0
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.3e-145 520.4 413 68.8
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 1.7e-145 520.0 441 64.2
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 2.2e-145 519.6 439 64.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 2.9e-145 519.2 417 66.4
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 6.4e-145 518.1 438 65.5
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 1.1e-144 517.3 402 68.7
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 4.2e-144 515.4 441 64.6
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 4.6e-143 511.9 430 65.3
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 6.0e-143 511.5 399 68.4
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 6.0e-143 511.5 414 66.2
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 1.9e-141 506.5 411 66.2
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 2.5e-141 506.1 431 65.4
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 4.3e-141 505.4 403 65.3
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.5e-138 496.9 442 62.2
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 4.5e-138 495.4 423 63.6
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 5.8e-138 495.0 405 65.7
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.7e-137 493.4 405 66.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.4e-137 491.1 469 58.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 1.6e-135 486.9 433 61.4
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.7e-135 486.1 439 60.4
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 4.6e-135 485.3 384 66.1
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 6.0e-135 485.0 433 61.9
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 6.0e-135 485.0 399 63.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 1.0e-134 484.2 384 65.6
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.3e-134 483.8 386 66.3
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 1.3e-134 483.8 383 64.8
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.3e-134 483.8 439 60.1
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.0e-134 482.6 317 77.0
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 8.7e-134 481.1 409 61.4
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.1e-133 480.7 409 61.1
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.9e-133 479.9 391 64.5
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 2.1e-132 476.5 421 60.8
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 2.1e-132 476.5 409 62.1
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 2.1e-132 476.5 431 60.6
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.8e-132 476.1 390 63.3
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.8e-132 476.1 391 65.5
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 3.7e-132 475.7 431 60.6
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 3.7e-132 475.7 396 63.1
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 6.2e-132 474.9 413 60.5
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 1.8e-131 473.4 423 62.4
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 3.1e-131 472.6 440 58.6
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 3.1e-131 472.6 376 66.2
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 5.3e-131 471.9 448 59.4
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 6.9e-131 471.5 402 62.2
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 9.0e-131 471.1 443 59.8
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 1.5e-130 470.3 317 73.8
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.5e-130 470.3 452 58.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.6e-130 469.5 384 64.3
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 2.6e-130 469.5 384 64.3
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 5.8e-130 468.4 358 67.3
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.6e-130 468.0 408 61.3
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 2.2e-129 466.5 317 72.9
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 6.4e-129 464.9 396 62.6
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 1.9e-128 463.4 435 57.0
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 4.2e-128 462.2 342 68.1
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.1e-127 459.9 430 58.6
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 3.5e-127 459.1 438 58.0
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.0e-126 457.6 415 58.8
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 8.2e-124 448.0 393 60.3
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 6.9e-123 444.9 405 59.3
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 1.5e-122 443.7 446 55.8
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.9e-121 439.5 343 67.3
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-120 437.2 401 59.6
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 2.1e-119 433.3 423 56.7
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 2.7e-119 433.0 425 55.3
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 2.7e-119 433.0 423 56.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 4.6e-119 432.2 412 57.3
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 7.9e-119 431.4 414 58.0
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 1.0e-118 431.0 430 54.7
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.3e-118 430.6 418 56.0
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 1.3e-118 430.6 352 62.2
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.3e-118 429.9 409 57.7
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 8.7e-118 427.9 417 56.1
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.9e-117 426.8 417 55.9
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 9.7e-117 424.5 419 55.1
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 1.3e-116 424.1 423 56.7
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 1.6e-116 423.7 394 57.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-116 423.7 394 57.9
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 2.2e-116 423.3 418 56.0
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 3.7e-116 422.5 422 55.5
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 8.2e-116 421.4 401 56.1
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-115 419.9 421 55.3
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 3.1e-115 419.5 394 57.6
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 9.0e-115 417.9 317 68.5
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 7.6e-114 414.8 389 58.6
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 1.7e-113 413.7 383 59.8
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 3.2e-112 409.5 410 57.6
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 5.5e-112 408.7 387 58.7
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 5.5e-112 408.7 402 56.7
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 7.2e-112 408.3 377 58.4
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 7.2e-112 408.3 532 45.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 2.1e-111 406.8 395 54.9
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 1.3e-108 397.5 408 56.1
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 4.8e-108 395.6 405 56.0
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 8.2e-108 394.8 395 50.9
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 2.4e-107 393.3 402 56.0
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-107 391.3 402 55.7
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.5e-106 389.0 411 55.5
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.5e-106 389.0 411 55.5
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 5.9e-106 388.7 402 56.0
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 7.7e-106 388.3 420 54.5
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 7.7e-106 388.3 420 54.5
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.2e-105 386.7 317 65.6
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 8.5e-105 384.8 386 56.7
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 1.1e-104 384.4 323 64.7
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 1.4e-104 384.0 420 54.0
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 1.9e-104 383.6 401 55.9
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 3.2e-104 382.9 320 58.1
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 2.7e-103 379.8 315 60.6
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-100 370.9 394 52.3
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 1.9e-96 357.1 339 56.9
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 1.6e-90 337.4 427 46.8
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 6.5e-89 332.0 281 61.6
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 6.8e-78 295.4 191 77.0
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 8.0e-55 218.8 331 39.3
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.1e-51 208.4 201 56.7
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 3.2e-51 206.8 272 43.4
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 1.2e-50 204.9 184 58.7
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-44 184.9 288 40.3
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 3.8e-36 156.8 278 39.9
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 1.6e-31 141.4 207 41.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.6e-26 124.8 102 65.7
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 2.1e-26 124.4 173 46.2
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 3.8e-20 103.6 135 49.6
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.2e-19 100.5 102 52.0
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.6e-18 98.2 246 30.1
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 9.6e-16 89.0 111 48.6
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 2.9e-12 77.4 56 66.1


User provided reference genes

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