Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001277 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1614.0 785 100.0
CsaV3_3G030980 Cucumis sativus L. HOM05D004219 ORTHO05D004857 0.0e+00 1380.5 785 85.4
Sed0013084 Sechium edule HOM05D004219 ORTHO05D004857 0.0e+00 1366.7 774 85.7
MELO3C022696.2 Cucumis melo HOM05D004219 ORTHO05D004857 0.0e+00 1364.7 785 84.6
ClCG07G014320 Citrullus lanatus HOM05D004219 ORTHO05D004857 0.0e+00 1333.2 754 86.6
Cfa003467 Carpinus fangiana HOM05D004219 ORTHO05D004857 0.0e+00 1137.5 783 70.2
CiPaw.01G212300 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1122.8 787 69.0
CiPaw.02G131700 Carya illinoinensis HOM05D004219 ORTHO05D004857 0.0e+00 1119.8 780 69.5
Prupe.3G031800 Prunus persica HOM05D004219 ORTHO05D004857 0.0e+00 1111.3 782 70.1
QL05p001749 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1110.5 783 69.2
QL05p001473 Quercus lobata HOM05D004219 ORTHO05D004857 0.0e+00 1105.9 783 69.1
CANSAT56G2968 Cannabis sativa HOM05D004219 ORTHO05D004857 0.0e+00 1105.5 779 68.8
MD17G1153300 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1093.6 781 68.9
RcHm_v2.0_Chr2g0147711 Rosa chinensis HOM05D004219 ORTHO05D004857 0.0e+00 1093.2 775 68.9
GSVIVG01016680001 Vitis vinifera HOM05D004219 ORTHO05D004857 0.0e+00 1091.6 775 68.6
FAN02G2730 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1082.4 775 68.1
FvH4_6g35710 Fragaria vesca HOM05D004219 ORTHO05D004857 0.0e+00 1077.8 775 68.3
FAN14G4832 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1077.8 775 68.3
FAN09G1853 Fragaria x ananassa HOM05D004219 ORTHO05D004857 0.0e+00 1077.0 775 68.3
MD09G1173700 Malus domestica HOM05D004219 ORTHO05D004857 0.0e+00 1075.5 782 68.2
Dinv20389 Davidia involucrata HOM05D004219 ORTHO05D004857 2.0e-309 1065.4 776 66.6
Glyma.07G045100 Glycine max HOM05D004219 ORTHO05D004857 4.5e-309 1064.3 784 67.0
Nn6g35715 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.7e-308 1062.4 784 67.0
TAR383G0549 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.9e-308 1061.6 781 65.6
Glyma.16G013100 Glycine max HOM05D004219 ORTHO05D004857 2.5e-307 1058.5 782 66.8
Phvul.010G123900 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 4.1e-302 1041.2 785 66.4
TAR624G1175 Trochodendron aralioides HOM05D004219 ORTHO05D004857 1.5e-301 1039.3 789 64.6
MBI13_g01684_MAGBIO Magnolia biondii HOM05D004219 ORTHO05D004857 1.7e-300 1035.8 778 65.4
Actinidia21828 Actinidia chinensis HOM05D004219 ORTHO05D004857 4.2e-299 1031.2 779 65.2
CsaV3_7G034010 Cucumis sativus L. HOM05D004219 ORTHO05D004857 2.1e-298 1028.9 784 65.4
CSS0038823 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 2.3e-297 1025.4 780 64.6
CSS0000587 Camellia sinensis var. sinensis HOM05D004219 ORTHO05D004857 5.1e-297 1024.2 780 64.6
Haze_16129 Corylus avellana HOM05D004219 ORTHO05D004857 8.8e-297 1023.5 826 62.6
Lj3g0000905 Lotus japonicus HOM05D004219 ORTHO05D004857 7.4e-296 1020.4 784 65.4
ClCG09G001310 Citrullus lanatus HOM05D004219 ORTHO05D004857 1.3e-295 1019.6 786 65.0
Rhsim08G0243800 Rhododendron simsii HOM05D004219 ORTHO05D004857 1.1e-294 1016.5 808 62.9
Ca_23428_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.8e-294 1015.8 793 65.2
Sed0013718 Sechium edule HOM05D004219 ORTHO05D004857 2.4e-294 1015.4 785 65.6
Cc04_g00810 Coffea canephora HOM05D004219 ORTHO05D004857 9.1e-294 1013.4 774 63.2
TPR.G18148 Trifolium pratense HOM05D004219 ORTHO05D004857 1.2e-293 1013.1 788 64.8
Lalb_Chr17g0343311 Lupinus albus HOM05D004219 ORTHO05D004857 1.6e-293 1012.7 782 63.8
Psat4g165840 Pisum sativum HOM05D004219 ORTHO05D004857 4.5e-293 1011.1 795 64.4
VMungo0331G1133 Vigna mungo HOM05D004219 ORTHO05D004857 1.7e-292 1009.2 786 65.0
Manes.16G089900 Manihot esculenta HOM05D004219 ORTHO05D004857 5.0e-292 1007.7 775 64.0
vmacro15080 Vaccinium macrocarpon HOM05D004219 ORTHO05D004857 2.5e-291 1005.4 794 63.1
Medtr8g022980 Medicago truncatula HOM05D004219 ORTHO05D004857 4.7e-290 1001.1 781 64.8
PGSC0003DMG400028852 Solanum tuberosum HOM05D004219 ORTHO05D004857 2.3e-289 998.8 776 63.1
Sopen12g024040 Solanum pennellii HOM05D004219 ORTHO05D004857 3.0e-289 998.4 780 63.1
Peaxi162Scf00177g00619 Petunia axillaris HOM05D004219 ORTHO05D004857 4.0e-289 998.0 777 62.9
QL11p003182 Quercus lobata HOM05D004219 ORTHO05D004857 6.7e-289 997.3 786 63.4
Lj5A30T66 Lonicera japonica HOM05D004219 ORTHO05D004857 2.0e-288 995.7 770 64.7
Nitab4.5_0000357g0090 Nicotiana tabacum HOM05D004219 ORTHO05D004857 5.7e-288 994.2 782 62.4
Solyc12g049570.3 Solanum lycopersicum HOM05D004219 ORTHO05D004857 9.7e-288 993.4 780 62.8
Oeu059024.1 Olea europaea HOM05D004219 ORTHO05D004857 2.8e-287 991.9 777 62.9
Potri.006G135500 Populus trichocarpa HOM05D004219 ORTHO05D004857 2.8e-287 991.9 775 64.1
Ciclev10007563m.g Citrus clementina HOM05D004219 ORTHO05D004857 4.1e-286 988.0 775 63.2
Lalb_Chr04g0253891 Lupinus albus HOM05D004219 ORTHO05D004857 4.1e-286 988.0 773 64.6
CAN.G1721.2 Capsicum annuum HOM05D004219 ORTHO05D004857 5.3e-286 987.6 776 63.0
Sabra18G0057200 Salix brachista HOM05D004219 ORTHO05D004857 1.2e-285 986.5 775 63.9
Nitab4.5_0004589g0030 Nicotiana tabacum HOM05D004219 ORTHO05D004857 2.7e-285 985.3 781 62.1
Duzib187G1712 Durio zibethinus HOM05D004219 ORTHO05D004857 4.5e-285 984.6 776 64.2
Cpa.g.sc82.51 Carica papaya HOM05D004219 ORTHO05D004857 7.7e-285 983.8 774 62.4
DCAR_016092 Daucus carota HOM05D004219 ORTHO05D004857 1.3e-284 983.0 771 63.3
Thecc.09G069400 Theobroma cacao HOM05D004219 ORTHO05D004857 1.3e-284 983.0 776 63.1
PSO135G0149 Papaver somniferum HOM05D004219 ORTHO05D004857 6.5e-284 980.7 785 62.2
Hund05707 Selenicereus undatus HOM05D004219 ORTHO05D004857 1.5e-283 979.5 784 62.5
TWI63G0110 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 2.5e-283 978.8 777 63.2
Duzib168G0770 Durio zibethinus HOM05D004219 ORTHO05D004857 4.2e-283 978.0 776 63.3
Potri.018G064500 Populus trichocarpa HOM05D004219 ORTHO05D004857 1.2e-282 976.5 775 63.5
PSO724G0293 Papaver somniferum HOM05D004219 ORTHO05D004857 2.7e-282 975.3 791 62.1
TWI34G1001 Tripterygium wilfordii HOM05D004219 ORTHO05D004857 4.7e-282 974.5 778 62.6
Manes.03G045300 Manihot esculenta HOM05D004219 ORTHO05D004857 6.1e-282 974.2 775 62.2
Aqoxy7G00940 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 1.0e-281 973.4 780 61.9
GSVIVG01015005001 Vitis vinifera HOM05D004219 ORTHO05D004857 4.0e-281 971.5 776 63.4
Duzib150G0120 Durio zibethinus HOM05D004219 ORTHO05D004857 3.4e-280 968.4 781 62.6
AUR62025624 Chenopodium quinoa HOM05D004219 ORTHO05D004857 2.2e-279 965.7 823 59.3
Gorai.001G018000 Gossypium raimondii HOM05D004219 ORTHO05D004857 1.1e-278 963.4 776 62.9
Eucgr.C00764 Eucalyptus grandis HOM05D004219 ORTHO05D004857 2.4e-278 962.2 775 61.8
Sc15g0000780 Simmondsia chinensis HOM05D004219 ORTHO05D004857 2.4e-278 962.2 782 61.3
Gohir.A07G017500 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.5e-277 958.0 776 62.6
Gorai.010G095800 Gossypium raimondii HOM05D004219 ORTHO05D004857 5.9e-277 957.6 779 62.6
Gohir.A05G036600 Gossypium hirsutum HOM05D004219 ORTHO05D004857 1.0e-276 956.8 775 61.9
Migut.I01126 Erythranthe guttata HOM05D004219 ORTHO05D004857 1.7e-276 956.1 788 61.4
Gorai.009G038600 Gossypium raimondii HOM05D004219 ORTHO05D004857 2.5e-275 952.2 775 61.8
Gohir.D05G038100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.7e-274 948.0 775 61.8
Gohir.A06G084100 Gossypium hirsutum HOM05D004219 ORTHO05D004857 4.0e-273 944.9 777 62.4
HanXRQChr09g0277221 Helianthus annuus HOM05D004219 ORTHO05D004857 5.7e-272 941.0 740 63.0
Medtr2g044550 Medicago truncatula HOM05D004219 ORTHO05D004857 1.1e-270 936.8 782 61.1
Lalb_Chr08g0232811 Lupinus albus HOM05D004219 ORTHO05D004857 4.1e-270 934.9 779 60.8
EL10Ac7g16483 Beta vulgaris HOM05D004219 ORTHO05D004857 5.9e-269 931.0 790 59.4
Lj6g0016067 Lotus japonicus HOM05D004219 ORTHO05D004857 5.9e-269 931.0 779 62.4
Gohir.D06G082300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.9e-268 928.7 778 61.2
Glyma.09G074300 Glycine max HOM05D004219 ORTHO05D004857 3.8e-268 928.3 778 60.7
MELO3C024313.2 Cucumis melo HOM05D004219 ORTHO05D004857 5.0e-268 927.9 771 61.1
Glyma.U031325 Glycine max HOM05D004219 ORTHO05D004857 8.6e-268 927.2 778 60.5
CDE04G3533 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 2.8e-266 922.2 785 59.9
VMungo1309G2772 Vigna mungo HOM05D004219 ORTHO05D004857 8.0e-266 920.6 779 60.2
PGR142G3683 Punica granatum HOM05D004219 ORTHO05D004857 2.3e-265 919.1 775 60.5
Phvul.009G223200 Phaseolus vulgaris HOM05D004219 ORTHO05D004857 2.6e-264 915.6 779 60.1
ECA232G2871 Erigeron canadensis HOM05D004219 ORTHO05D004857 2.2e-263 912.5 779 60.2
THA.LOC104799604 Tarenaya hassleriana HOM05D004219 ORTHO05D004857 2.2e-263 912.5 778 60.4
ATR0099G075 Amborella trichopoda HOM05D004219 ORTHO05D004857 6.4e-263 911.0 800 58.9
TPR.G26875 Trifolium pratense HOM05D004219 ORTHO05D004857 1.1e-262 910.2 783 60.3
Carub.0005s0906 Capsella rubella HOM05D004219 ORTHO05D004857 1.4e-262 909.8 784 59.2
AL5G21340 Arabidopsis lyrata HOM05D004219 ORTHO05D004857 1.8e-262 909.4 785 58.7
Aqoxy7G04168 Aquilegia oxysepala HOM05D004219 ORTHO05D004857 3.2e-262 908.7 777 59.2
Lalb_Chr23g0276141 Lupinus albus HOM05D004219 ORTHO05D004857 3.2e-262 908.7 778 58.9
AT3G43240 Arabidopsis thaliana HOM05D004219 ORTHO05D004857 1.6e-261 906.4 784 58.4
Sp5g18450 Schrenkiella parvula HOM05D004219 ORTHO05D004857 1.0e-260 903.7 775 59.0
Thhalv10002415m.g Eutrema salsugineum HOM05D004219 ORTHO05D004857 6.6e-260 901.0 776 58.4
Cfa002934 Carpinus fangiana HOM05D004219 ORTHO05D004857 1.1e-259 900.2 747 62.4
BcaB01g01229 Brassica carinata HOM05D004219 ORTHO05D004857 3.3e-259 898.7 781 58.8
CARHR153440 Cardamine hirsuta HOM05D004219 ORTHO05D004857 1.2e-258 896.7 783 58.0
BcaC01g02109 Brassica carinata HOM05D004219 ORTHO05D004857 2.1e-258 896.0 779 58.7
HPP92_019289 Vanilla planifolia HOM05D004219 ORTHO05D004857 2.3e-257 892.5 781 57.5
A06p22640 Brassica napus HOM05D004219 ORTHO05D004857 7.5e-256 887.5 780 58.5
Gohir.D07G017300 Gossypium hirsutum HOM05D004219 ORTHO05D004857 2.2e-255 885.9 776 58.8
Ah.08g217310 Amaranthus hybridus HOM05D004219 ORTHO05D004857 9.2e-254 880.6 779 57.3
BolC3t19092H Brassica oleracea HOM05D004219 ORTHO05D004857 2.0e-253 879.4 783 58.1
TAR626G0374 Trochodendron aralioides HOM05D004219 ORTHO05D004857 9.5e-251 870.5 764 57.2
Zm00001eb313820 Zea mays HOM05D004219 ORTHO05D004857 1.6e-250 869.8 783 56.7
PGR044G2279 Punica granatum HOM05D004219 ORTHO05D004857 5.2e-249 864.8 783 58.7
Aa31LG4G12950 Aethionema arabicum HOM05D004219 ORTHO05D004857 5.4e-246 854.7 793 56.5
Ca_02284_v3 Cicer arietinum L. HOM05D004219 ORTHO05D004857 1.7e-244 849.7 789 57.7
Hma1.2p1_0229F.1_g097030 Hydrangea macrophylla HOM05D004219 ORTHO05D004857 1.7e-244 849.7 724 59.0
Zm00001eb099960 Zea mays HOM05D004219 ORTHO05D004857 6.6e-244 847.8 783 56.1
COL.COLO4_21198 Corchorus olitorius HOM05D004219 ORTHO05D004857 1.0e-236 823.9 775 55.7
Haze_26074 Corylus avellana HOM05D004219 ORTHO05D004857 3.0e-236 822.4 861 53.0
Os08g0451400 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-235 819.7 761 56.0
Lsat_1_v5_gn_4_92081 Lactuca sativa HOM05D004219 ORTHO05D004857 2.9e-231 805.8 731 58.4
unitig_26.g8917 Utricularia gibba HOM05D004219 ORTHO05D004857 1.2e-229 800.4 784 54.8
Eucgr.I02158 Eucalyptus grandis HOM05D004219 ORTHO05D004857 7.8e-229 797.7 760 56.7
arahy.Tifrunner.gnm1.ann1.82J223 Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-226 790.0 785 54.5
arahy.Tifrunner.gnm1.ann1.BBC6WZ Arachis hypogaea HOM05D004219 ORTHO05D004857 1.6e-226 790.0 785 54.5
SGA_v2.0_scaffold71G23915 Striga asiatica HOM05D004219 ORTHO05D004857 6.2e-226 788.1 781 53.9
AUR62001416 Chenopodium quinoa HOM05D004219 ORTHO05D004857 4.8e-210 735.3 740 53.5
Sabra06G0106200 Salix brachista HOM05D004219 ORTHO05D004857 2.4e-209 733.0 708 56.2
Psat1g137920 Pisum sativum HOM05D004219 ORTHO05D004857 5.5e-206 721.8 690 55.9
Mapoly0094s0004 Marchantia polymorpha HOM05D004219 ORTHO05D004857 9.4e-182 641.3 784 45.7
Pp3c15_1350 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.1e-174 617.8 731 44.7
Zm00001eb040700 Zea mays HOM05D004219 ORTHO05D004857 1.0e-172 611.3 762 44.5
Actinidia24435 Actinidia chinensis HOM05D004219 ORTHO05D004857 2.8e-170 603.2 775 43.9
SMO133G0025 Selaginella moellendorffii HOM05D004219 ORTHO05D004857 1.1e-166 591.3 801 42.4
Pp3c6_26590 Physcomitrium patens HOM05D004219 ORTHO05D004857 1.6e-165 587.4 739 44.1
arahy.Tifrunner.gnm1.ann1.W70I1I Arachis hypogaea HOM05D004219 ORTHO05D004857 7.7e-160 568.5 399 69.7
arahy.Tifrunner.gnm1.ann1.B45F8N Arachis hypogaea HOM05D004219 ORTHO05D004857 2.3e-159 567.0 399 69.4
BraA06t25350Z Brassica rapa HOM05D004219 ORTHO05D004857 2.6e-155 553.5 446 61.9
Atru.chr7.1780 Acer truncatum HOM05D004219 ORTHO05D004857 1.6e-152 544.3 418 64.8
SEGI_01121 Sequoiadendron giganteum HOM05D004219 ORTHO05D004857 8.9e-148 528.5 787 39.5
AagrBONN_evm.TU.Sc2ySwM_344.4361 Anthoceros agrestis HOM05D004219 ORTHO05D004857 1.9e-137 494.2 584 45.7
unitig_749.g14037 Utricularia gibba HOM05D004219 ORTHO05D004857 3.6e-133 479.9 399 61.7
CDE06G0638 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 1.7e-122 444.5 466 52.4
Atru.chr7.1779 Acer truncatum HOM05D004219 ORTHO05D004857 2.3e-119 434.1 270 75.2
Os08g0451700 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.9e-110 404.4 453 48.1
CDE06G2764 Ceratophyllum demersum HOM05D004219 ORTHO05D004857 9.0e-108 395.6 255 72.9
CBR_g66811 Chara braunii HOM05D004219 ORTHO05D004857 9.6e-94 349.0 760 32.4
Os09g0434100 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.6e-72 278.5 278 51.8
Cre10.g429880 Chlamydomonas reinhardtii HOM05D004219 ORTHO05D004857 6.5e-66 256.5 753 28.7
unitig_749.g14036 Utricularia gibba HOM05D004219 ORTHO05D004857 2.7e-56 224.6 291 46.0
Medtr8g038730 Medicago truncatula HOM05D004219 ORTHO05D004857 1.4e-55 222.2 183 58.5
Nn5g27342 Nelumbo nucifera HOM05D004219 ORTHO05D004857 1.1e-44 186.0 152 60.5
Os09g0434000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 4.0e-39 167.5 90 78.9
TAR383G0322 Trochodendron aralioides HOM05D004219 ORTHO05D004857 2.6e-38 164.9 149 56.4
FAN05G1825 Fragaria x ananassa HOM05D004219 ORTHO05D004857 5.8e-30 137.1 68 83.8
Os08g0361000 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.1e-23 116.3 172 39.0
Os08g0451500 Oryza sativa ssp. japonica HOM05D004219 ORTHO05D004857 1.7e-21 109.0 145 40.0
MCO07G528 Micromonas commoda HOM05D004219 ORTHO05D004857 1.2e-11 76.3 103 37.9
AUR62025956 Chenopodium quinoa HOM05D000121 ORTHO05D024978 2.7e-11 75.1 87 43.7
BolSC21t60256H Brassica oleracea HOM05D020425 ORTHO05D021983 3.9e-10 71.2 46 71.7
C03p67880 Brassica napus HOM05D020425 ORTHO05D021983 2.1e-08 65.5 39 71.8
Oeu028234.1 Olea europaea HOM05D004219 ORTHO05D004857 2.8e-08 65.1 73 39.7


User provided reference genes

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