Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001244 Sechium edule HOM05D006592 ORTHO05D008122 6.1e-211 737.3 378 100.0
ClCG11G016240 Citrullus lanatus HOM05D006592 ORTHO05D008122 6.4e-152 541.2 540 57.2
MELO3C010544.2 Cucumis melo HOM05D006592 ORTHO05D008122 1.6e-142 510.0 536 54.5
CsaV3_4G037940 Cucumis sativus L. HOM05D006592 ORTHO05D008122 1.2e-129 467.2 488 54.3
MBI04_g30774_MAGBIO Magnolia biondii HOM05D006592 ORTHO05D008122 5.7e-76 288.9 426 42.5
Dinv37459 Davidia involucrata HOM05D006592 ORTHO05D008122 2.8e-75 286.6 494 38.1
Atru.chr6.2117 Acer truncatum HOM05D006592 ORTHO05D008122 4.5e-73 279.3 523 35.8
Haze_08005 Corylus avellana HOM05D006592 ORTHO05D008122 2.9e-72 276.6 472 37.7
Prupe.2G060600 Prunus persica HOM05D006592 ORTHO05D008122 1.5e-71 274.2 509 36.9
Lalb_Chr05g0229391 Lupinus albus HOM05D006592 ORTHO05D008122 5.5e-71 272.3 528 34.8
QL02p100032 Quercus lobata HOM05D006592 ORTHO05D008122 9.4e-71 271.6 475 37.5
FvH4_3g41920 Fragaria vesca HOM05D006592 ORTHO05D008122 2.7e-70 270.0 496 35.7
Hma1.2p1_1256F.1_g270670 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 3.6e-70 269.6 479 36.1
FAN11G2031 Fragaria x ananassa HOM05D006592 ORTHO05D008122 8.0e-70 268.5 496 35.7
Ca_22475_v3 Cicer arietinum L. HOM05D006592 ORTHO05D008122 1.0e-69 268.1 533 34.0
TPR.G16815 Trifolium pratense HOM05D006592 ORTHO05D008122 1.0e-69 268.1 505 35.2
AUR62027300 Chenopodium quinoa HOM05D006592 ORTHO05D008122 6.7e-69 265.4 354 40.4
Glyma.16G075200 Glycine max HOM05D006592 ORTHO05D008122 8.8e-69 265.0 471 34.8
Manes.17G005500 Manihot esculenta HOM05D006592 ORTHO05D008122 1.2e-68 264.6 483 36.0
FAN25G1190 Fragaria x ananassa HOM05D006592 ORTHO05D008122 1.5e-68 264.2 499 35.9
Phvul.003G276900 Phaseolus vulgaris HOM05D006592 ORTHO05D008122 2.6e-68 263.5 527 34.7
arahy.Tifrunner.gnm1.ann1.6CV8VS Arachis hypogaea HOM05D006592 ORTHO05D008122 3.3e-68 263.1 494 34.6
HanXRQChr13g0411871 Helianthus annuus HOM05D006592 ORTHO05D008122 2.8e-67 260.0 517 33.5
CiPaw.11G105000 Carya illinoinensis HOM05D006592 ORTHO05D008122 3.7e-67 259.6 420 37.1
arahy.Tifrunner.gnm1.ann1.35U8WI Arachis hypogaea HOM05D006592 ORTHO05D008122 1.1e-66 258.1 494 34.0
DCAR_028262 Daucus carota HOM05D006592 ORTHO05D008122 1.4e-66 257.7 535 33.8
Potri.003G105100 Populus trichocarpa HOM05D006592 ORTHO05D008122 1.4e-66 257.7 547 32.9
FAN21G3043 Fragaria x ananassa HOM05D006592 ORTHO05D008122 2.4e-66 256.9 526 35.0
GSVIVG01036935001 Vitis vinifera HOM05D006592 ORTHO05D008122 5.3e-66 255.8 542 33.6
MD07G1026800 Malus domestica HOM05D006592 ORTHO05D008122 9.1e-66 255.0 481 34.7
Sabra03G0072100 Salix brachista HOM05D006592 ORTHO05D008122 1.2e-65 254.6 529 33.6
TAR622G1375 Trochodendron aralioides HOM05D006592 ORTHO05D008122 3.5e-65 253.1 508 33.7
RcHm_v2.0_Chr1g0331171 Rosa chinensis HOM05D006592 ORTHO05D008122 2.2e-64 250.4 542 33.9
Eucgr.E01202 Eucalyptus grandis HOM05D006592 ORTHO05D008122 2.9e-64 250.0 472 33.7
PSO782G0843 Papaver somniferum HOM05D006592 ORTHO05D008122 2.9e-64 250.0 514 33.1
Medtr8g071820 Medicago truncatula HOM05D006592 ORTHO05D008122 5.0e-64 249.2 543 32.6
PSO063G4459 Papaver somniferum HOM05D006592 ORTHO05D008122 6.5e-64 248.8 500 32.8
Lsat_1_v5_gn_5_55220 Lactuca sativa HOM05D006592 ORTHO05D008122 1.5e-63 247.7 481 34.3
Thhalv10007328m.g Eutrema salsugineum HOM05D006592 ORTHO05D008122 1.2e-62 244.6 488 34.2
vmacro05080 Vaccinium macrocarpon HOM05D006592 ORTHO05D008122 1.2e-62 244.6 480 32.7
PGR042G2051 Punica granatum HOM05D006592 ORTHO05D008122 2.7e-62 243.4 504 33.5
Actinidia29329 Actinidia chinensis HOM05D006592 ORTHO05D008122 8.0e-62 241.9 552 33.3
SGA_v2.0_scaffold144G35824 Striga asiatica HOM05D006592 ORTHO05D008122 3.0e-61 240.0 521 31.1
Aqoxy7G04139 Aquilegia oxysepala HOM05D006592 ORTHO05D008122 4.0e-61 239.6 433 33.7
Solyc08g005860.3 Solanum lycopersicum HOM05D006592 ORTHO05D008122 5.2e-61 239.2 472 32.8
PGSC0003DMG400024141 Solanum tuberosum HOM05D006592 ORTHO05D008122 1.5e-60 237.7 472 32.8
CAN.G561.14 Capsicum annuum HOM05D006592 ORTHO05D008122 2.6e-60 236.9 537 32.2
AT1G31410 Arabidopsis thaliana HOM05D006592 ORTHO05D008122 2.2e-59 233.8 486 34.4
Sp1g27210 Schrenkiella parvula HOM05D006592 ORTHO05D008122 3.7e-59 233.0 489 32.9
Sopen08g001820 Solanum pennellii HOM05D006592 ORTHO05D008122 3.7e-59 233.0 472 32.6
Carub.0001s2983 Capsella rubella HOM05D006592 ORTHO05D008122 1.4e-58 231.1 480 33.1
Duzib084G0624 Durio zibethinus HOM05D006592 ORTHO05D008122 1.4e-58 231.1 504 32.1
TWI60G0674 Tripterygium wilfordii HOM05D006592 ORTHO05D008122 2.4e-58 230.3 476 32.4
Nitab4.5_0004477g0030 Nicotiana tabacum HOM05D006592 ORTHO05D008122 3.1e-58 229.9 472 32.0
AL1G49640 Arabidopsis lyrata HOM05D006592 ORTHO05D008122 5.4e-58 229.2 486 34.0
THA.LOC104814375 Tarenaya hassleriana HOM05D006592 ORTHO05D008122 1.2e-57 228.0 478 32.6
Gohir.D08G168300 Gossypium hirsutum HOM05D006592 ORTHO05D008122 1.6e-57 227.6 417 33.3
Zm00001eb430350 Zea mays HOM05D006592 ORTHO05D008122 1.6e-57 227.6 404 32.4
Gorai.004G175600 Gossypium raimondii HOM05D006592 ORTHO05D008122 2.0e-57 227.3 417 33.3
Nitab4.5_0000063g0390 Nicotiana tabacum HOM05D006592 ORTHO05D008122 2.0e-57 227.3 478 31.6
CDE11G0624 Ceratophyllum demersum HOM05D006592 ORTHO05D008122 2.7e-57 226.9 540 30.6
Rhsim07G0174700 Rhododendron simsii HOM05D006592 ORTHO05D008122 2.7e-57 226.9 445 31.7
Cc00_g08640 Coffea canephora HOM05D006592 ORTHO05D008122 5.9e-57 225.7 421 34.0
BcaB03g13796 Brassica carinata HOM05D006592 ORTHO05D008122 7.7e-57 225.3 480 32.3
Thecc.03G323800 Theobroma cacao HOM05D006592 ORTHO05D008122 1.7e-56 224.2 530 31.1
Peaxi162Scf00045g01236 Petunia axillaris HOM05D006592 ORTHO05D008122 3.8e-56 223.0 468 31.2
Aa31LG2G14540 Aethionema arabicum HOM05D006592 ORTHO05D008122 1.5e-55 221.1 507 31.4
AUR62007438 Chenopodium quinoa HOM05D006592 ORTHO05D008122 1.5e-55 221.1 459 30.7
A07p09410 Brassica napus HOM05D006592 ORTHO05D008122 3.2e-55 219.9 484 31.8
SalBow8G4832 Salvia bowleyana HOM05D006592 ORTHO05D008122 3.2e-55 219.9 524 30.5
SalBow8G1786 Salvia bowleyana HOM05D006592 ORTHO05D008122 5.5e-55 219.2 528 30.3
BraA07t28736Z Brassica rapa HOM05D006592 ORTHO05D008122 1.2e-54 218.0 480 31.9
Migut.E01392 Erythranthe guttata HOM05D006592 ORTHO05D008122 2.1e-54 217.2 475 29.1
ATR0829G075 Amborella trichopoda HOM05D006592 ORTHO05D008122 4.7e-54 216.1 396 33.8
C07p14480 Brassica napus HOM05D006592 ORTHO05D008122 2.3e-53 213.8 480 31.7
BolC7t41947H Brassica oleracea HOM05D006592 ORTHO05D008122 4.0e-53 213.0 484 31.2
Oeu028120.2 Olea europaea HOM05D006592 ORTHO05D008122 6.8e-53 212.2 490 29.8
ECA240G2178 Erigeron canadensis HOM05D006592 ORTHO05D008122 2.0e-52 210.7 481 32.4
EL10Ac5g11887 Beta vulgaris HOM05D006592 ORTHO05D008122 2.6e-52 210.3 461 30.6
Nn1g09214 Nelumbo nucifera HOM05D006592 ORTHO05D008122 1.8e-50 204.1 371 36.4
Hund14317 Selenicereus undatus HOM05D006592 ORTHO05D008122 5.9e-49 199.1 506 29.8
Ah.02g117360 Amaranthus hybridus HOM05D006592 ORTHO05D008122 3.8e-48 196.4 528 28.8
COL.COLO4_16712 Corchorus olitorius HOM05D006592 ORTHO05D008122 2.5e-47 193.7 394 32.5
CANSAT11G2102 Cannabis sativa HOM05D006592 ORTHO05D008122 5.2e-45 186.0 183 53.0
VMungo0251G2096 Vigna mungo HOM05D006592 ORTHO05D008122 2.6e-44 183.7 459 31.2
Glyma.16G106700 Glycine max HOM05D006592 ORTHO05D008122 1.4e-42 177.9 223 45.3
Cpa.g.sc137.28 Carica papaya HOM05D006592 ORTHO05D008122 1.2e-41 174.9 233 43.8
unitig_899.g15474 Utricularia gibba HOM05D006592 ORTHO05D008122 1.2e-41 174.9 505 28.3
Hma1.2p1_1046F.1_g251540 Hydrangea macrophylla HOM05D006592 ORTHO05D008122 3.5e-41 173.3 134 61.9
Lj8A380T21 Lonicera japonica HOM05D006592 ORTHO05D008122 1.7e-40 171.0 135 59.3
Os04g0602200 Oryza sativa ssp. japonica HOM05D006592 ORTHO05D008122 1.7e-40 171.0 361 29.1
Lj4g0015969 Lotus japonicus HOM05D006592 ORTHO05D008122 6.6e-40 169.1 217 42.4
Glyma.16G106500 Glycine max HOM05D006592 ORTHO05D008122 3.3e-39 166.8 205 41.5
Lj4g0008520 Lotus japonicus HOM05D006592 ORTHO05D008122 1.2e-38 164.9 205 42.0
AagrBONN_evm.TU.Sc2ySwM_344.4668 Anthoceros agrestis HOM05D006592 ORTHO05D008122 4.7e-38 162.9 442 26.0
SMO244G0026 Selaginella moellendorffii HOM05D006592 ORTHO05D008122 1.4e-37 161.4 382 27.7
Psat4g134920 Pisum sativum HOM05D006592 ORTHO05D008122 1.8e-37 161.0 228 43.4
Psat4g109400 Pisum sativum HOM05D006592 ORTHO05D008122 2.3e-37 160.6 205 42.4
CSS0050204 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 4.4e-36 156.4 122 59.0
Sc01g0005990 Simmondsia chinensis HOM05D006592 ORTHO05D008122 2.9e-35 153.7 236 40.7
CARHR030900 Cardamine hirsuta HOM05D006592 ORTHO05D008122 3.0e-32 143.7 147 51.0
CSS0028407 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 3.9e-32 143.3 150 50.0
CSS0043715 Camellia sinensis var. sinensis HOM05D006592 ORTHO05D008122 6.6e-32 142.5 150 50.0
Sc01g0005980 Simmondsia chinensis HOM05D006592 ORTHO05D008122 3.6e-30 136.7 206 35.9
Gohir.A08G147100 Gossypium hirsutum HOM05D006592 ORTHO05D008122 8.1e-30 135.6 128 51.6
Pp3c1_19230 Physcomitrium patens HOM05D006592 ORTHO05D008122 3.1e-29 133.7 127 48.8
SEGI_06764 Sequoiadendron giganteum HOM05D006592 ORTHO05D008122 1.1e-26 125.2 129 48.8
Mapoly0006s0240 Marchantia polymorpha HOM05D006592 ORTHO05D008122 1.7e-24 117.9 129 42.6
CBR_g37675 Chara braunii HOM05D006592 ORTHO05D008122 4.0e-21 106.7 143 38.5
CBR_g19872 Chara braunii HOM05D006592 ORTHO05D008122 1.3e-19 101.7 111 42.3
Ciclev10004057m.g Citrus clementina HOM05D006592 ORTHO05D008122 1.9e-18 97.8 81 58.0
HPP92_015141 Vanilla planifolia HOM05D006592 ORTHO05D008122 2.4e-13 80.9 66 51.5
Cre06.g292100 Chlamydomonas reinhardtii HOM05D006592 ORTHO05D008122 1.9e-10 71.2 109 37.6
AagrBONN_evm.TU.Sc2ySwM_117.3387 Anthoceros agrestis HOM05D006592 ORTHO05D008122 6.0e-09 66.2 130 29.2
Hma1.2p1_1046F.1_g251530 Hydrangea macrophylla HOM05D000002 ORTHO05D000001 1.3e-08 65.1 61 52.5
Zm00001eb071790 Zea mays HOM05D006592 ORTHO05D008122 1.9e-07 61.2 55 54.5


User provided reference genes

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