Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001225 Sechium edule HOM05D005809 ORTHO05D007259 1.9e-122 442.6 230 100.0
MELO3C004136.2 Cucumis melo HOM05D005809 ORTHO05D007259 7.2e-106 387.5 230 87.8
CsaV3_2G007490 Cucumis sativus L. HOM05D005809 ORTHO05D007259 7.9e-105 384.0 230 87.0
ClCG02G014530 Citrullus lanatus HOM05D005809 ORTHO05D007259 4.5e-92 341.7 211 85.8
CSS0045900 Camellia sinensis var. sinensis HOM05D005809 ORTHO05D007259 4.7e-81 305.1 230 67.0
QL02p093215 Quercus lobata HOM05D005809 ORTHO05D007259 4.0e-80 302.0 232 67.7
CiPaw.15G168900 Carya illinoinensis HOM05D005809 ORTHO05D007259 8.8e-80 300.8 231 67.1
Dinv43244 Davidia involucrata HOM05D005809 ORTHO05D007259 2.2e-78 296.2 231 64.9
Dinv41380 Davidia involucrata HOM05D005809 ORTHO05D007259 8.2e-78 294.3 231 64.5
GSVIVG01023603001 Vitis vinifera HOM05D005809 ORTHO05D007259 5.3e-77 291.6 231 64.1
CANSAT11G2656 Cannabis sativa HOM05D005809 ORTHO05D007259 7.0e-77 291.2 232 65.1
Lalb_Chr23g0275681 Lupinus albus HOM05D005809 ORTHO05D007259 5.9e-76 288.1 231 64.9
TWI34G1090 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 1.0e-75 287.3 233 63.9
Hma1.2p1_0222F.1_g093550 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 8.5e-75 284.3 230 63.0
Lj6g0016819 Lotus japonicus HOM05D005809 ORTHO05D007259 8.5e-75 284.3 231 64.1
Thecc.09G030800 Theobroma cacao HOM05D005809 ORTHO05D007259 8.5e-75 284.3 231 64.1
Gohir.D05G056000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 1.1e-74 283.9 230 63.9
Ciclev10009378m.g Citrus clementina HOM05D005809 ORTHO05D007259 1.5e-74 283.5 231 64.5
COL.COLO4_18808 Corchorus olitorius HOM05D005809 ORTHO05D007259 3.2e-74 282.3 231 62.8
Gorai.009G057000 Gossypium raimondii HOM05D005809 ORTHO05D007259 4.2e-74 282.0 230 63.5
Phvul.009G195100 Phaseolus vulgaris HOM05D005809 ORTHO05D007259 9.4e-74 280.8 230 63.5
Ca_03733_v3 Cicer arietinum L. HOM05D005809 ORTHO05D007259 2.1e-73 279.6 233 62.7
TWI32G0918 Tripterygium wilfordii HOM05D005809 ORTHO05D007259 3.6e-73 278.9 226 65.5
Prupe.7G262800 Prunus persica HOM05D005809 ORTHO05D007259 1.0e-72 277.3 230 62.2
Atru.chr7.51 Acer truncatum HOM05D005809 ORTHO05D007259 5.2e-72 275.0 227 62.1
Nn8g39891 Nelumbo nucifera HOM05D005809 ORTHO05D007259 5.2e-72 275.0 231 61.5
arahy.Tifrunner.gnm1.ann1.46B1EJ Arachis hypogaea HOM05D005809 ORTHO05D007259 6.8e-72 274.6 224 63.8
MD02G1007700 Malus domestica HOM05D005809 ORTHO05D007259 6.8e-72 274.6 230 61.3
Duzib187G1947 Durio zibethinus HOM05D005809 ORTHO05D007259 1.2e-71 273.9 230 61.7
AL8G34030 Arabidopsis lyrata HOM05D005809 ORTHO05D007259 2.0e-71 273.1 230 62.6
arahy.Tifrunner.gnm1.ann1.Z5GGTZ Arachis hypogaea HOM05D005809 ORTHO05D007259 5.7e-71 271.6 224 63.4
RcHm_v2.0_Chr2g0085671 Rosa chinensis HOM05D005809 ORTHO05D007259 5.7e-71 271.6 230 63.9
Medtr2g460780 Medicago truncatula HOM05D005809 ORTHO05D007259 1.3e-70 270.4 232 60.3
CARHR271730 Cardamine hirsuta HOM05D005809 ORTHO05D007259 1.7e-70 270.0 231 61.5
TPR.G20735 Trifolium pratense HOM05D005809 ORTHO05D007259 1.7e-70 270.0 232 60.8
TAR636G3217 Trochodendron aralioides HOM05D005809 ORTHO05D007259 2.8e-70 269.2 232 60.8
AT5G57950 Arabidopsis thaliana HOM05D005809 ORTHO05D007259 4.8e-70 268.5 230 61.3
Carub.0008s1848 Capsella rubella HOM05D005809 ORTHO05D007259 4.8e-70 268.5 230 60.0
Sabra06G0140200 Salix brachista HOM05D005809 ORTHO05D007259 6.3e-70 268.1 227 63.9
Potri.006G184600 Populus trichocarpa HOM05D005809 ORTHO05D007259 8.3e-70 267.7 232 61.2
Eucgr.C02492 Eucalyptus grandis HOM05D005809 ORTHO05D007259 1.1e-69 267.3 231 59.3
Glyma.06G219200 Glycine max HOM05D005809 ORTHO05D007259 1.1e-69 267.3 224 62.9
Sp6g19620 Schrenkiella parvula HOM05D005809 ORTHO05D007259 2.4e-69 266.2 230 60.0
Eucgr.C02542 Eucalyptus grandis HOM05D005809 ORTHO05D007259 3.1e-69 265.8 231 58.9
Sc08g0005640 Simmondsia chinensis HOM05D005809 ORTHO05D007259 4.1e-69 265.4 230 59.6
FAN23G2666 Fragaria x ananassa HOM05D005809 ORTHO05D007259 9.1e-69 264.2 230 63.0
BraA10t43609Z Brassica rapa HOM05D005809 ORTHO05D007259 1.6e-68 263.5 230 59.6
Glyma.06G219400 Glycine max HOM05D005809 ORTHO05D007259 2.7e-68 262.7 233 59.7
PGR102G1797 Punica granatum HOM05D005809 ORTHO05D007259 4.5e-68 261.9 230 58.3
Solyc07g005640.3 Solanum lycopersicum HOM05D005809 ORTHO05D007259 4.5e-68 261.9 231 61.0
MSTRG.19648 Avicennia marina HOM05D005809 ORTHO05D007259 5.9e-68 261.5 230 59.1
Migut.J01341 Erythranthe guttata HOM05D005809 ORTHO05D007259 7.7e-68 261.2 230 59.1
ECA247G0266 Erigeron canadensis HOM05D005809 ORTHO05D007259 1.3e-67 260.4 231 60.2
Sopen07g001740 Solanum pennellii HOM05D005809 ORTHO05D007259 2.3e-67 259.6 231 60.6
THA.LOC104817821 Tarenaya hassleriana HOM05D005809 ORTHO05D007259 2.3e-67 259.6 231 60.2
HanXRQChr17g0552351 Helianthus annuus HOM05D005809 ORTHO05D007259 2.9e-67 259.2 230 58.3
Manes.06G033951 Manihot esculenta HOM05D005809 ORTHO05D007259 3.8e-67 258.8 232 59.1
A10p16200 Brassica napus HOM05D005809 ORTHO05D007259 5.0e-67 258.5 230 59.6
Psat1g021800 Pisum sativum HOM05D005809 ORTHO05D007259 8.6e-67 257.7 230 58.3
Oeu052197.1 Olea europaea HOM05D005809 ORTHO05D007259 4.2e-66 255.4 232 58.2
Aqoxy2G02328 Aquilegia oxysepala HOM05D005809 ORTHO05D007259 5.5e-66 255.0 230 54.8
PGSC0003DMG401011139 Solanum tuberosum HOM05D005809 ORTHO05D007259 5.5e-66 255.0 231 59.7
FvH4_1g00940 Fragaria vesca HOM05D005809 ORTHO05D007259 1.6e-65 253.4 223 62.3
Thhalv10014592m.g Eutrema salsugineum HOM05D005809 ORTHO05D007259 2.8e-65 252.7 223 60.1
SalBow1G5910 Salvia bowleyana HOM05D005809 ORTHO05D007259 8.0e-65 251.1 223 59.2
Aa31LG3G13770 Aethionema arabicum HOM05D000853 ORTHO05D000723 1.4e-64 250.4 232 56.0
Cpa.g.sc46.154 Carica papaya HOM05D005809 ORTHO05D007259 1.4e-64 250.4 223 59.6
BolC9t57830H Brassica oleracea HOM05D005809 ORTHO05D007259 5.2e-64 248.4 230 57.4
Duzib168G0271 Durio zibethinus HOM05D005809 ORTHO05D007259 8.9e-64 247.7 223 60.1
C09p49790 Brassica napus HOM05D005809 ORTHO05D007259 1.5e-63 246.9 230 57.0
unitig_746.g26584 Utricularia gibba HOM05D005809 ORTHO05D007259 3.4e-63 245.7 230 56.1
Actinidia04301 Actinidia chinensis HOM05D005809 ORTHO05D007259 4.4e-63 245.4 231 58.9
Haze_19206 Corylus avellana HOM05D005809 ORTHO05D007259 9.8e-63 244.2 223 61.4
vmacro16802 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 9.8e-63 244.2 281 51.6
Ah.02g128190 Amaranthus hybridus HOM05D005809 ORTHO05D007259 2.2e-62 243.0 232 56.5
PSO782G1751 Papaver somniferum HOM05D005809 ORTHO05D007259 4.1e-61 238.8 230 53.9
HPP92_016019 Vanilla planifolia HOM05D005809 ORTHO05D007259 5.4e-61 238.4 230 54.8
Lsat_1_v5_gn_8_63301 Lactuca sativa HOM05D005809 ORTHO05D007259 1.6e-60 236.9 243 52.7
PSO063G2086 Papaver somniferum HOM05D005809 ORTHO05D007259 1.6e-60 236.9 230 53.5
Rhsim01G0033400 Rhododendron simsii HOM05D005809 ORTHO05D007259 2.0e-60 236.5 224 58.0
Sed0002126 Sechium edule HOM05D005809 ORTHO05D007259 2.0e-60 236.5 161 79.5
Zm00001eb312980 Zea mays HOM05D005809 ORTHO05D007259 2.7e-60 236.1 230 54.8
CAN.G160.58 Capsicum annuum HOM05D005809 ORTHO05D007259 1.3e-59 233.8 235 56.2
ATR0739G206 Amborella trichopoda HOM05D005809 ORTHO05D007259 2.9e-59 232.6 227 55.5
Gohir.A05G055000 Gossypium hirsutum HOM05D005809 ORTHO05D007259 2.9e-59 232.6 235 56.6
Os09g0420600 Oryza sativa ssp. japonica HOM05D005809 ORTHO05D007259 1.1e-58 230.7 230 52.6
Nitab4.5_0001571g0010 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.4e-56 223.8 237 53.2
SGA_v2.0_scaffold265G46107 Striga asiatica HOM05D005809 ORTHO05D007259 1.4e-56 223.8 223 54.3
Peaxi162Scf00401g00082 Petunia axillaris HOM05D005809 ORTHO05D007259 1.8e-56 223.4 216 55.1
HPP92_016035 Vanilla planifolia HOM05D005809 ORTHO05D007259 8.9e-56 221.1 211 55.9
Nitab4.5_0005653g0040 Nicotiana tabacum HOM05D005809 ORTHO05D007259 1.5e-55 220.3 229 53.7
SMO361G0343 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 9.8e-55 217.6 230 50.4
DCAR_017909 Daucus carota HOM05D005809 ORTHO05D007259 1.7e-54 216.9 252 52.0
CDE12G0564 Ceratophyllum demersum HOM05D005809 ORTHO05D007259 3.2e-53 212.6 256 48.0
SEGI_31268 Sequoiadendron giganteum HOM05D005809 ORTHO05D007259 7.0e-53 211.5 231 50.2
SMO361G0248 Selaginella moellendorffii HOM05D005809 ORTHO05D007259 2.0e-52 209.9 224 50.9
AagrBONN_evm.TU.Sc2ySwM_117.3948 Anthoceros agrestis HOM05D005809 ORTHO05D007259 1.5e-50 203.8 234 49.6
Mapoly0003s0072 Marchantia polymorpha HOM05D005809 ORTHO05D007259 9.5e-50 201.1 237 46.8
Pp3c8_2960 Physcomitrium patens HOM05D005809 ORTHO05D007259 3.6e-49 199.1 235 47.2
Hund01517 Selenicereus undatus HOM05D005809 ORTHO05D007259 3.1e-48 196.1 223 48.9
Dinv42856 Davidia involucrata HOM05D005809 ORTHO05D007259 6.8e-48 194.9 164 61.6
Actinidia38322 Actinidia chinensis HOM05D005809 ORTHO05D007259 3.4e-47 192.6 166 63.9
Lj9C717G7 Lonicera japonica HOM05D005809 ORTHO05D007259 9.8e-47 191.0 223 49.8
Pp3c16_13530 Physcomitrium patens HOM05D005809 ORTHO05D007259 2.2e-46 189.9 223 46.6
FAN28G0834 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.9e-46 189.5 231 50.6
vmacro05441 Vaccinium macrocarpon HOM05D005809 ORTHO05D007259 8.3e-46 188.0 206 53.4
AUR62035200 Chenopodium quinoa HOM05D005809 ORTHO05D007259 2.4e-45 186.4 230 44.8
SHI02853 Sapria himalayana HOM05D005809 ORTHO05D007259 2.3e-43 179.9 221 47.1
Hma1.2p1_0010F.1_g006710 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 6.8e-40 168.3 163 55.8
CBR_g38078 Chara braunii HOM05D000019 ORTHO05D000048 8.4e-30 134.8 261 32.6
Cc06_g14990 Coffea canephora HOM05D005809 ORTHO05D007259 4.6e-28 129.0 101 63.4
Aa31LG1G19310 Aethionema arabicum HOM05D005809 ORTHO05D007259 1.5e-26 124.0 101 60.4
FAN25G0559 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.5e-26 123.2 111 61.3
RcHm_v2.0_Chr5g0031291 Rosa chinensis HOM05D005809 ORTHO05D007259 9.6e-26 121.3 144 52.8
MCO13G469 Micromonas commoda HOM05D005809 ORTHO05D007259 1.3e-25 120.9 223 35.0
FAN21G3780 Fragaria x ananassa HOM05D005809 ORTHO05D007259 1.6e-25 120.6 192 42.7
Cc06_g14980 Coffea canephora HOM05D005809 ORTHO05D007259 4.8e-25 119.0 104 58.7
EL10As1g23143 Beta vulgaris HOM05D005809 ORTHO05D007259 5.3e-24 115.5 94 60.6
Cre04.g226950 Chlamydomonas reinhardtii HOM05D005809 ORTHO05D007259 1.0e-19 101.3 274 28.1
Oeu007777.1 Olea europaea HOM05D005809 ORTHO05D007259 2.5e-18 96.7 89 53.9
Hma1.2p1_0222F.1_g093570 Hydrangea macrophylla HOM05D005809 ORTHO05D007259 3.3e-18 96.3 73 67.1
Oeu049715.1 Olea europaea HOM05D005809 ORTHO05D007259 5.6e-18 95.5 89 53.9
FvH4_3g18530 Fragaria vesca HOM05D005809 ORTHO05D007259 2.1e-17 93.6 172 39.0
FAN11G2737 Fragaria x ananassa HOM05D005809 ORTHO05D007259 2.1e-17 93.6 172 39.0
Oeu038698.1 Olea europaea HOM05D005809 ORTHO05D007259 2.1e-17 93.6 89 51.7
EL10As1g23140 Beta vulgaris HOM05D005809 ORTHO05D007259 4.8e-17 92.4 63 66.7
Oeu017561.1 Olea europaea HOM05D005809 ORTHO05D007259 1.1e-16 91.3 89 51.7
PRCOL_00000214 Prasinoderma coloniale HOM05D005809 ORTHO05D007259 4.0e-16 89.4 196 31.6
CSS0015204 Camellia sinensis var. sinensis HOM05D000853 ORTHO05D000723 2.9e-14 83.2 74 58.1
FAN26G2229 Fragaria x ananassa HOM05D005809 ORTHO05D007259 5.4e-13 79.0 56 69.6
Oeu029241.1 Olea europaea HOM05D005809 ORTHO05D007259 7.1e-13 78.6 77 50.6
vmacro11582 Vaccinium macrocarpon HOM05D005809 ORTHO05D010075 2.3e-11 73.6 55 67.3
MD09G1175000 Malus domestica HOM05D005809 ORTHO05D007259 7.4e-10 68.6 91 47.3


User provided reference genes

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