Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001206 Sechium edule HOM05D002291 ORTHO05D002496 2.3e-51 205.3 103 100.0
Sed0005811 Sechium edule HOM05D002291 ORTHO05D002496 1.3e-27 126.3 108 67.6
MELO3C004444.2 Cucumis melo HOM05D002291 ORTHO05D002496 1.1e-26 123.2 108 63.0
ClCG02G017270 Citrullus lanatus HOM05D002291 ORTHO05D002496 8.9e-24 113.6 92 68.5
CsaV3_2G003530 Cucumis sativus L. HOM05D007046 ORTHO05D008788 2.1e-20 102.4 75 74.7
Duzib187G0257 Durio zibethinus HOM05D002291 ORTHO05D002496 1.5e-18 96.3 93 59.1
QL02p091382 Quercus lobata HOM05D002291 ORTHO05D002496 1.9e-18 95.9 78 62.8
Thecc.09G142300 Theobroma cacao HOM05D002291 ORTHO05D002496 9.6e-18 93.6 85 62.4
Phvul.003G175100 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 2.1e-17 92.4 71 62.0
Hma1.2p1_0182F.1_g080570 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 2.8e-17 92.0 74 63.5
Dinv43189 Davidia involucrata HOM05D002291 ORTHO05D002496 4.8e-17 91.3 78 57.7
Oeu052182.1 Olea europaea HOM05D002291 ORTHO05D002496 4.8e-17 91.3 91 50.5
Cfa020885 Carpinus fangiana HOM05D002291 ORTHO05D002496 8.1e-17 90.5 77 58.4
Peaxi162Scf00177g00073 Petunia axillaris HOM05D002291 ORTHO05D002496 8.1e-17 90.5 93 54.8
Carub.0004s2917 Capsella rubella HOM05D002291 ORTHO05D002496 1.1e-16 90.1 93 50.5
CSS0043235 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 1.4e-16 89.7 94 48.9
Nitab4.5_0005330g0060 Nicotiana tabacum HOM05D002291 ORTHO05D002496 1.4e-16 89.7 90 54.4
Cpa.g.sc46.90 Carica papaya HOM05D002291 ORTHO05D002496 1.8e-16 89.4 72 62.5
CSS0042018 Camellia sinensis var. sinensis HOM05D002291 ORTHO05D002496 2.4e-16 89.0 94 48.9
Duzib150G1435 Durio zibethinus HOM05D002291 ORTHO05D002496 3.1e-16 88.6 87 60.9
Nitab4.5_0001151g0070 Nicotiana tabacum HOM05D002291 ORTHO05D002496 3.1e-16 88.6 69 60.9
Migut.J01277 Erythranthe guttata HOM05D002291 ORTHO05D002496 4.0e-16 88.2 91 54.9
Oeu061127.1 Olea europaea HOM05D002291 ORTHO05D002496 4.0e-16 88.2 82 56.1
Phvul.009G209300 Phaseolus vulgaris HOM05D002291 ORTHO05D002496 4.0e-16 88.2 83 56.6
Prupe.7G253800 Prunus persica HOM05D002291 ORTHO05D002496 4.0e-16 88.2 72 62.5
AT2G46490 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 5.3e-16 87.8 91 53.8
Glyma.15G202600 Glycine max HOM05D002291 ORTHO05D002496 5.3e-16 87.8 87 54.0
Nitab4.5_0001751g0020 Nicotiana tabacum HOM05D002291 ORTHO05D002496 5.3e-16 87.8 90 52.2
Peaxi162Scf00347g00017 Petunia axillaris HOM05D002291 ORTHO05D002496 6.9e-16 87.4 92 55.4
PGSC0003DMG401007888 Solanum tuberosum HOM05D002291 ORTHO05D002496 6.9e-16 87.4 89 53.9
MD15G1158600 Malus domestica HOM05D002291 ORTHO05D002496 1.2e-15 86.7 86 58.1
Oeu038253.1 Olea europaea HOM05D002291 ORTHO05D002496 1.2e-15 86.7 71 54.9
Oeu040780.1 Olea europaea HOM05D002291 ORTHO05D002496 1.2e-15 86.7 78 57.7
AL4G45830 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.5e-15 86.3 122 45.9
AL4G45850 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.5e-15 86.3 122 45.9
AL4G45870 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.5e-15 86.3 122 45.9
AL4G45890 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 1.5e-15 86.3 122 45.9
Solyc12g010400.2 Solanum lycopersicum HOM05D002291 ORTHO05D002496 1.5e-15 86.3 89 51.7
Sopen12g005420 Solanum pennellii HOM05D002291 ORTHO05D002496 1.5e-15 86.3 89 51.7
CARHR141790 Cardamine hirsuta HOM05D002291 ORTHO05D002496 2.0e-15 85.9 107 43.9
Lj5g0000889 Lotus japonicus HOM05D002291 ORTHO05D002496 2.0e-15 85.9 77 58.4
Nn2g12255 Nelumbo nucifera HOM05D002291 ORTHO05D002496 2.6e-15 85.5 75 57.3
CiPaw.15G181200 Carya illinoinensis HOM05D002291 ORTHO05D002496 3.4e-15 85.1 86 57.0
TWI34G1223 Tripterygium wilfordii HOM05D002291 ORTHO05D002496 3.4e-15 85.1 89 53.9
BcaNung05602 Brassica carinata HOM05D002291 ORTHO05D002496 4.4e-15 84.7 102 49.0
Gohir.A08G237300 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.4e-15 84.7 78 59.0
MD02G1012800 Malus domestica HOM05D002291 ORTHO05D002496 4.4e-15 84.7 86 55.8
Manes.14G139400 Manihot esculenta HOM05D002291 ORTHO05D002496 7.6e-15 84.0 85 52.9
C03p30620 Brassica napus HOM05D002291 ORTHO05D002496 1.3e-14 83.2 79 57.0
ClCG06G012060 Citrullus lanatus HOM05D002291 ORTHO05D002496 1.3e-14 83.2 87 55.2
COL.COLO4_24089 Corchorus olitorius HOM05D002291 ORTHO05D002496 1.3e-14 83.2 71 57.7
Sp4g28490 Schrenkiella parvula HOM05D002291 ORTHO05D002496 1.3e-14 83.2 85 52.9
Solyc07g007050.1 Solanum lycopersicum HOM05D002291 ORTHO05D002496 1.3e-14 83.2 69 55.1
BcaB01g03214 Brassica carinata HOM05D002291 ORTHO05D002496 1.7e-14 82.8 79 55.7
CANSAT11G0551 Cannabis sativa HOM05D002291 ORTHO05D002496 1.7e-14 82.8 72 55.6
CAN.G518.9 Capsicum annuum HOM05D002291 ORTHO05D002496 1.7e-14 82.8 88 48.9
Atru.chr7.219 Acer truncatum HOM05D002291 ORTHO05D002496 2.2e-14 82.4 89 51.7
BcaC01g05065 Brassica carinata HOM05D002291 ORTHO05D002496 2.2e-14 82.4 85 50.6
BolC3t15412H Brassica oleracea HOM05D002291 ORTHO05D002496 2.2e-14 82.4 85 50.6
Migut.K00368 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.2e-14 82.4 87 51.7
Glyma.09G094900 Glycine max HOM05D002291 ORTHO05D002496 2.2e-14 82.4 88 48.9
unitig_748.g7183 Utricularia gibba HOM05D002291 ORTHO05D002496 2.2e-14 82.4 76 56.6
DCAR_014930 Daucus carota HOM05D002291 ORTHO05D002496 3.8e-14 81.6 83 53.0
Sopen07g003120 Solanum pennellii HOM05D002291 ORTHO05D002496 3.8e-14 81.6 69 55.1
PGSC0003DMG400030741 Solanum tuberosum HOM05D002291 ORTHO05D002496 3.8e-14 81.6 87 49.4
PGSC0003DMG400030742 Solanum tuberosum HOM05D002291 ORTHO05D002496 3.8e-14 81.6 87 49.4
CiPaw.15G181400 Carya illinoinensis HOM05D002291 ORTHO05D002496 4.9e-14 81.3 77 59.7
THA.LOC104826568 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 4.9e-14 81.3 118 44.9
Lalb_Chr08g0233841 Lupinus albus HOM05D002291 ORTHO05D002496 6.4e-14 80.9 75 52.0
Sabra18G0096600 Salix brachista HOM05D002291 ORTHO05D002496 6.4e-14 80.9 74 54.1
Sc14g0000090 Simmondsia chinensis HOM05D002291 ORTHO05D002496 6.4e-14 80.9 84 54.8
CiPaw.16G117500 Carya illinoinensis HOM05D002291 ORTHO05D002496 8.4e-14 80.5 73 54.8
Glyma.17G104600 Glycine max HOM05D002291 ORTHO05D002496 8.4e-14 80.5 79 58.2
Gorai.004G275000 Gossypium raimondii HOM05D002291 ORTHO05D002496 8.4e-14 80.5 78 57.7
Gorai.010G055000 Gossypium raimondii HOM05D002291 ORTHO05D002496 8.4e-14 80.5 96 52.1
Ciclev10009990m.g Citrus clementina HOM05D002291 ORTHO05D002496 1.1e-13 80.1 80 55.0
SalBow1G0319 Salvia bowleyana HOM05D002291 ORTHO05D002496 1.1e-13 80.1 89 47.2
Actinidia38701 Actinidia chinensis HOM05D002291 ORTHO05D002496 1.4e-13 79.7 88 54.5
BcaC01g05064 Brassica carinata HOM05D002291 ORTHO05D002496 1.4e-13 79.7 101 47.5
Ca_13603_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 1.4e-13 79.7 79 53.2
Ca_30444_v3 Cicer arietinum L. HOM05D002291 ORTHO05D002496 1.4e-13 79.7 79 53.2
Lalb_Chr23g0275801 Lupinus albus HOM05D002291 ORTHO05D002496 1.4e-13 79.7 75 52.0
A03p25670 Brassica napus HOM05D002291 ORTHO05D002496 1.9e-13 79.3 82 53.7
BraA03t11782Z Brassica rapa HOM05D002291 ORTHO05D002496 1.9e-13 79.3 82 53.7
Glyma.13G157000 Glycine max HOM05D002291 ORTHO05D002496 1.9e-13 79.3 81 53.1
VMungo1309G2977 Vigna mungo HOM05D002291 ORTHO05D002496 1.9e-13 79.3 83 54.2
Duzib168G2034 Durio zibethinus HOM05D002291 ORTHO05D002496 2.4e-13 79.0 106 47.2
Sed0002205 Sechium edule HOM05D002291 ORTHO05D002496 2.4e-13 79.0 74 55.4
Oeu026098.1 Olea europaea HOM05D002291 ORTHO05D002496 3.2e-13 78.6 79 49.4
Gohir.A06G049100 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.2e-13 78.2 89 53.9
Potri.018G113700 Populus trichocarpa HOM05D002291 ORTHO05D002496 4.2e-13 78.2 102 46.1
THA.LOC104815397 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 4.2e-13 78.2 85 48.2
A05p01310 Brassica napus HOM05D002291 ORTHO05D002496 5.4e-13 77.8 101 46.5
BraA05t19129Z Brassica rapa HOM05D002291 ORTHO05D002496 5.4e-13 77.8 101 46.5
Gohir.D08G257900 Gossypium hirsutum HOM05D002291 ORTHO05D002496 5.4e-13 77.8 77 57.1
CsaV3_1G028530 Cucumis sativus L. HOM05D002291 ORTHO05D002496 9.3e-13 77.0 75 57.3
Lalb_Chr11g0072841 Lupinus albus HOM05D002291 ORTHO05D002496 9.3e-13 77.0 67 53.7
THA.LOC104808924 Tarenaya hassleriana HOM05D002291 ORTHO05D002496 9.3e-13 77.0 91 49.5
BcaC02g12525 Brassica carinata HOM05D002291 ORTHO05D002496 1.2e-12 76.6 101 46.5
BolC4t21798H Brassica oleracea HOM05D002291 ORTHO05D002496 1.2e-12 76.6 101 46.5
PGR102G1132 Punica granatum HOM05D002291 ORTHO05D002496 1.2e-12 76.6 76 53.9
RcHm_v2.0_Chr2g0086561 Rosa chinensis HOM05D002291 ORTHO05D002496 1.2e-12 76.6 95 53.7
Aqoxy6G02828 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.6e-12 76.3 85 47.1
Lsat_1_v5_gn_7_47800 Lactuca sativa HOM05D002291 ORTHO05D002496 2.1e-12 75.9 90 53.3
Potri.006G189600 Populus trichocarpa HOM05D002291 ORTHO05D002496 2.1e-12 75.9 100 43.0
C04p01440 Brassica napus HOM05D002291 ORTHO05D002496 2.7e-12 75.5 101 45.5
Gohir.D06G048800 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.7e-12 75.5 96 50.0
Sed0006817 Sechium edule HOM05D002291 ORTHO05D002496 2.7e-12 75.5 80 52.5
Manes.06G041100 Manihot esculenta HOM05D002291 ORTHO05D002496 3.5e-12 75.1 75 56.0
DCAR_017763 Daucus carota HOM05D002291 ORTHO05D002496 4.6e-12 74.7 68 48.5
MELO3C010261.2 Cucumis melo HOM05D002291 ORTHO05D002496 6.0e-12 74.3 70 57.1
Lalb_Chr07g0179531 Lupinus albus HOM05D002291 ORTHO05D002496 1.0e-11 73.6 87 49.4
TAR626G1664 Trochodendron aralioides HOM05D002291 ORTHO05D002496 1.0e-11 73.6 68 55.9
AT5G35110 Arabidopsis thaliana HOM05D002291 ORTHO05D002496 1.3e-11 73.2 78 52.6
FAN19G0716 Fragaria x ananassa HOM05D002291 ORTHO05D002496 1.3e-11 73.2 98 50.0
FvH4_1g01610 Fragaria vesca HOM05D002291 ORTHO05D002496 3.0e-11 72.0 99 48.5
FAN23G1691 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.0e-11 72.0 98 49.0
FAN26G1319 Fragaria x ananassa HOM05D002291 ORTHO05D002496 3.0e-11 72.0 79 51.9
FAN28G2341 Fragaria x ananassa HOM05D000118 ORTHO05D000098 3.0e-11 72.0 98 49.0
Sabra06G0145800 Salix brachista HOM05D002291 ORTHO05D002496 3.0e-11 72.0 74 48.6
Carub.0007s3090 Capsella rubella HOM05D002291 ORTHO05D002496 3.9e-11 71.6 62 54.8
AL7G43990 Arabidopsis lyrata HOM05D002291 ORTHO05D002496 5.1e-11 71.2 78 51.3
CARHR217180 Cardamine hirsuta HOM05D002291 ORTHO05D002496 5.1e-11 71.2 79 51.9
DCAR_020908 Daucus carota HOM05D002291 ORTHO05D002496 6.6e-11 70.9 69 49.3
Lsat_1_v5_gn_8_60480 Lactuca sativa HOM05D002291 ORTHO05D002496 6.6e-11 70.9 90 48.9
BcaC07g37675 Brassica carinata HOM05D002291 ORTHO05D002496 8.7e-11 70.5 74 51.4
BolC8t48047H Brassica oleracea HOM05D002291 ORTHO05D002496 8.7e-11 70.5 74 51.4
HanXRQChr03g0064541 Helianthus annuus HOM05D002291 ORTHO05D002496 8.7e-11 70.5 92 47.8
Lalb_Chr13g0301181 Lupinus albus HOM05D002291 ORTHO05D002496 8.7e-11 70.5 69 50.7
Psat0s4009g0080 Pisum sativum HOM05D002291 ORTHO05D002496 8.7e-11 70.5 84 48.8
Aqoxy7G03977 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.1e-10 70.1 83 47.0
Gohir.D13G208700 Gossypium hirsutum HOM05D002291 ORTHO05D002496 1.1e-10 70.1 90 52.2
Gorai.013G237800 Gossypium raimondii HOM05D002291 ORTHO05D002496 1.1e-10 70.1 90 52.2
HanXRQChr06g0182051 Helianthus annuus HOM05D002291 ORTHO05D002496 1.1e-10 70.1 90 50.0
HanXRQChr05g0143211 Helianthus annuus HOM05D002291 ORTHO05D002496 1.5e-10 69.7 93 45.2
TPR.G22803 Trifolium pratense HOM05D002291 ORTHO05D002496 1.9e-10 69.3 81 45.7
A08p09600 Brassica napus HOM05D002291 ORTHO05D002496 2.5e-10 68.9 74 50.0
BraA08t32957Z Brassica rapa HOM05D002291 ORTHO05D002496 2.5e-10 68.9 74 50.0
Gohir.A13G203400 Gossypium hirsutum HOM05D002291 ORTHO05D002496 3.3e-10 68.6 90 52.2
AUR62011250 Chenopodium quinoa HOM05D002291 ORTHO05D002496 4.3e-10 68.2 101 45.5
Thhalv10005650m.g Eutrema salsugineum HOM05D002291 ORTHO05D002496 4.3e-10 68.2 70 51.4
MBI15_g31410_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 4.3e-10 68.2 70 48.6
Nn8g39724 Nelumbo nucifera HOM05D002291 ORTHO05D002496 4.3e-10 68.2 67 46.3
BcaB04g18061 Brassica carinata HOM05D002291 ORTHO05D002496 5.6e-10 67.8 76 47.4
PSO832G3277 Papaver somniferum HOM05D002291 ORTHO05D002496 5.6e-10 67.8 72 48.6
EL10Ac8g18812 Beta vulgaris HOM05D002291 ORTHO05D002496 7.3e-10 67.4 87 51.7
Sp7g07240 Schrenkiella parvula HOM05D002291 ORTHO05D002496 9.6e-10 67.0 80 45.0
Aqoxy7G03523 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.3e-09 66.6 78 47.4
AUR62041454 Chenopodium quinoa HOM05D002291 ORTHO05D002496 1.3e-09 66.6 101 45.5
PGR142G0643 Punica granatum HOM05D002291 ORTHO05D002496 3.6e-09 65.1 95 45.3
HPP92_010439 Vanilla planifolia HOM05D002291 ORTHO05D002496 4.8e-09 64.7 91 46.2
Lsat_1_v5_gn_7_47820 Lactuca sativa HOM05D002291 ORTHO05D002496 6.2e-09 64.3 99 44.4
HanXRQChr09g0243231 Helianthus annuus HOM05D002291 ORTHO05D002496 1.4e-08 63.2 86 44.2
Lsat_1_v5_gn_8_60440 Lactuca sativa HOM05D002291 ORTHO05D002496 1.4e-08 63.2 97 40.2
ATR0629G115 Amborella trichopoda HOM05D002291 ORTHO05D002496 1.8e-08 62.8 69 49.3
HanXRQChr03g0064551 Helianthus annuus HOM05D002291 ORTHO05D002496 1.8e-08 62.8 87 48.3
Medtr2g461270 Medicago truncatula HOM05D002291 ORTHO05D002496 9.0e-08 60.5 100 36.0
Aqoxy7G03526 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.5e-07 59.7 83 43.4
Prupe.1G525100 Prunus persica HOM05D002291 ORTHO05D002496 3.4e-07 58.5 65 40.0
ECA236G2080 Erigeron canadensis HOM05D002291 ORTHO05D002496 4.5e-07 58.2 80 43.8
MBI14_g15652_MAGBIO Magnolia biondii HOM05D002291 ORTHO05D002496 4.5e-07 58.2 59 50.8
FAN19G2591 Fragaria x ananassa HOM05D002291 ORTHO05D002496 5.8e-07 57.8 88 34.1
ECA240G4705 Erigeron canadensis HOM05D002291 ORTHO05D002496 9.9e-07 57.0 92 42.4
Manes.14G139050 Manihot esculenta HOM05D002291 ORTHO05D002496 9.9e-07 57.0 74 40.5
RcHm_v2.0_Chr2g0086491 Rosa chinensis HOM05D002291 ORTHO05D002496 9.9e-07 57.0 70 42.9
Aqoxy6G00792 Aquilegia oxysepala HOM05D002291 ORTHO05D002496 1.3e-06 56.6 63 44.4
FvH4_1g01620 Fragaria vesca HOM05D002291 ORTHO05D002496 1.3e-06 56.6 88 34.1
Medtr4g116610 Medicago truncatula HOM05D002291 ORTHO05D048899 1.3e-06 56.6 61 45.9
RcHm_v2.0_Chr2g0086581 Rosa chinensis HOM05D002291 ORTHO05D002496 1.3e-06 56.6 79 35.4
Nn2g12256 Nelumbo nucifera HOM05D002291 ORTHO05D002496 1.7e-06 56.2 98 39.8
Prupe.7G254200 Prunus persica HOM05D002291 ORTHO05D002496 1.7e-06 56.2 73 38.4
FAN28G2256 Fragaria x ananassa HOM05D002291 ORTHO05D002496 2.2e-06 55.8 86 37.2
Gohir.D06G048866 Gossypium hirsutum HOM05D002291 ORTHO05D002496 2.2e-06 55.8 85 41.2
Migut.K00374 Erythranthe guttata HOM05D002291 ORTHO05D002496 2.9e-06 55.5 69 42.0
Prupe.7G254100 Prunus persica HOM05D002291 ORTHO05D002496 2.9e-06 55.5 92 34.8
Migut.K00372 Erythranthe guttata HOM05D002291 ORTHO05D002496 3.8e-06 55.1 70 41.4
Prupe.7G254000 Prunus persica HOM05D002291 ORTHO05D002496 3.8e-06 55.1 87 33.3
COL.COLO4_24095 Corchorus olitorius HOM05D002291 ORTHO05D002496 4.9e-06 54.7 82 40.2
Haze_19315 Corylus avellana HOM05D002291 ORTHO05D002496 4.9e-06 54.7 75 40.0
Gohir.A06G049449 Gossypium hirsutum HOM05D002291 ORTHO05D002496 4.9e-06 54.7 77 42.9
RcHm_v2.0_Chr2g0086601 Rosa chinensis HOM05D002291 ORTHO05D002496 4.9e-06 54.7 98 33.7
Hma1.2p1_0182F.1_g080530 Hydrangea macrophylla HOM05D002291 ORTHO05D002496 6.4e-06 54.3 84 38.1
FvH4_1g01650 Fragaria vesca HOM05D002291 ORTHO05D002496 8.4e-06 53.9 81 38.3
FvH4_1g01670 Fragaria vesca HOM05D002291 ORTHO05D002496 8.4e-06 53.9 66 36.4
Gorai.010G055300 Gossypium raimondii HOM05D002291 ORTHO05D002496 8.4e-06 53.9 87 43.7
RcHm_v2.0_Chr2g0086591 Rosa chinensis HOM05D002291 ORTHO05D002496 8.4e-06 53.9 67 37.3


User provided reference genes

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