Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001191 Sechium edule HOM05D005146 ORTHO05D006752 8.0e-163 577.0 287 100.0
CsaV3_2G029420 Cucumis sativus L. HOM05D005146 ORTHO05D006752 1.7e-152 542.7 287 93.7
ClCG08G014400 Citrullus lanatus HOM05D005146 ORTHO05D006752 1.3e-141 506.5 287 89.2
MELO3C011001.2 Cucumis melo HOM05D005146 ORTHO05D006752 2.3e-138 495.7 299 85.3
Atru.chr13.312 Acer truncatum HOM05D005146 ORTHO05D006752 1.3e-133 479.9 280 82.5
QL02p011373 Quercus lobata HOM05D005146 ORTHO05D006752 4.3e-132 474.9 279 82.1
ECA238G2776 Erigeron canadensis HOM05D005146 ORTHO05D006752 3.6e-131 471.9 272 81.6
CANSAT11G0704 Cannabis sativa HOM05D005146 ORTHO05D006752 8.0e-131 470.7 279 80.3
PGR083G0855 Punica granatum HOM05D005146 ORTHO05D006752 1.0e-130 470.3 280 80.7
CiPaw.07G151400 Carya illinoinensis HOM05D005146 ORTHO05D006752 1.4e-130 469.9 279 78.9
GSVIVG01009887001 Vitis vinifera HOM05D005146 ORTHO05D006752 3.0e-130 468.8 278 80.2
Thecc.09G245400 Theobroma cacao HOM05D005146 ORTHO05D006752 6.8e-130 467.6 278 79.9
Prupe.1G367100 Prunus persica HOM05D005146 ORTHO05D006752 8.9e-130 467.2 280 78.2
Eucgr.F01641 Eucalyptus grandis HOM05D005146 ORTHO05D006752 2.0e-129 466.1 273 81.0
Lsat_1_v5_gn_2_8601 Lactuca sativa HOM05D005146 ORTHO05D006752 2.0e-129 466.1 277 79.4
MD15G1013600 Malus domestica HOM05D005146 ORTHO05D006752 4.4e-129 464.9 276 79.0
RcHm_v2.0_Chr6g0302671 Rosa chinensis HOM05D005146 ORTHO05D006752 5.8e-129 464.5 272 79.8
Cc10_g01800 Coffea canephora HOM05D005146 ORTHO05D006752 7.5e-129 464.2 271 80.8
Dinv31832 Davidia involucrata HOM05D005146 ORTHO05D006752 7.5e-129 464.2 279 78.1
Gohir.D08G020900 Gossypium hirsutum HOM05D005146 ORTHO05D006752 7.5e-129 464.2 279 79.2
Gohir.A08G010500 Gossypium hirsutum HOM05D005146 ORTHO05D006752 9.8e-129 463.8 279 79.2
Haze_04102 Corylus avellana HOM05D005146 ORTHO05D006752 1.3e-128 463.4 279 79.6
DCAR_009928 Daucus carota HOM05D005146 ORTHO05D006752 1.3e-128 463.4 279 78.5
HanXRQChr06g0183611 Helianthus annuus HOM05D005146 ORTHO05D006752 1.3e-128 463.4 272 80.1
Rhsim06G0022400 Rhododendron simsii HOM05D005146 ORTHO05D006752 1.7e-128 463.0 276 79.3
Cfa006669 Carpinus fangiana HOM05D005146 ORTHO05D006752 2.2e-128 462.6 279 79.6
Ciclev10002090m.g Citrus clementina HOM05D005146 ORTHO05D006752 4.9e-128 461.5 271 80.4
PGSC0003DMG400003775 Solanum tuberosum HOM05D005146 ORTHO05D006752 4.9e-128 461.5 270 78.5
Potri.002G023700 Populus trichocarpa HOM05D005146 ORTHO05D006752 6.4e-128 461.1 278 78.4
Nitab4.5_0001540g0020 Nicotiana tabacum HOM05D005146 ORTHO05D006752 8.3e-128 460.7 270 79.6
FvH4_2g38650 Fragaria vesca HOM05D005146 ORTHO05D006752 1.4e-127 459.9 272 79.0
TWI56G0936 Tripterygium wilfordii HOM05D005146 ORTHO05D006752 1.9e-127 459.5 279 77.4
FAN27G1976 Fragaria x ananassa HOM05D005146 ORTHO05D006752 2.4e-127 459.1 272 79.0
Manes.05G148600 Manihot esculenta HOM05D005146 ORTHO05D006752 2.4e-127 459.1 271 80.8
Solyc04g081310.3 Solanum lycopersicum HOM05D005146 ORTHO05D006752 3.2e-127 458.8 270 77.8
Sopen04g034930 Solanum pennellii HOM05D005146 ORTHO05D006752 3.2e-127 458.8 270 77.8
Manes.11G065850 Manihot esculenta HOM05D005146 ORTHO05D006752 4.1e-127 458.4 271 80.1
FAN15G2679 Fragaria x ananassa HOM05D005146 ORTHO05D006752 9.2e-127 457.2 272 78.7
CAN.G311.14 Capsicum annuum HOM05D005146 ORTHO05D006752 1.2e-126 456.8 270 78.5
Sabra02G0019300 Salix brachista HOM05D005146 ORTHO05D006752 2.7e-126 455.7 278 77.7
Cpa.g.sc1059.3 Carica papaya HOM05D005146 ORTHO05D006752 3.5e-126 455.3 271 79.7
Nn6g32362 Nelumbo nucifera HOM05D005146 ORTHO05D006752 6.0e-126 454.5 278 76.6
PSO700G0287 Papaver somniferum HOM05D005146 ORTHO05D006752 6.0e-126 454.5 270 78.1
Actinidia15413 Actinidia chinensis HOM05D005146 ORTHO05D006752 7.8e-126 454.1 275 78.2
FAN20G2808 Fragaria x ananassa HOM05D005146 ORTHO05D006752 7.8e-126 454.1 272 78.3
SGA_v2.0_scaffold12G05971 Striga asiatica HOM05D005146 ORTHO05D006752 1.0e-125 453.8 271 79.7
CARHR239690 Cardamine hirsuta HOM05D005146 ORTHO05D006752 1.7e-125 453.0 277 79.4
AT4G31790 Arabidopsis thaliana HOM05D005146 ORTHO05D006752 2.3e-125 452.6 277 80.5
MD08G1014100 Malus domestica HOM05D005146 ORTHO05D006752 2.3e-125 452.6 276 76.4
Medtr3g113750 Medicago truncatula HOM05D005146 ORTHO05D006752 2.3e-125 452.6 271 80.4
TPR.G34539 Trifolium pratense HOM05D005146 ORTHO05D006752 2.3e-125 452.6 271 78.2
AL7G20220 Arabidopsis lyrata HOM05D005146 ORTHO05D006752 3.9e-125 451.8 277 80.5
Migut.N03153 Erythranthe guttata HOM05D005146 ORTHO05D006752 3.9e-125 451.8 271 79.3
PSO170G4907 Papaver somniferum HOM05D005146 ORTHO05D006752 3.9e-125 451.8 269 78.1
Thhalv10025950m.g Eutrema salsugineum HOM05D005146 ORTHO05D006752 5.0e-125 451.4 275 79.6
THA.LOC104825772 Tarenaya hassleriana HOM05D005146 ORTHO05D006752 5.0e-125 451.4 271 80.1
BolC1t00708H Brassica oleracea HOM05D005146 ORTHO05D006752 6.6e-125 451.1 277 78.0
CSS0007392 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.5e-124 449.9 273 78.8
CSS0032974 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.5e-124 449.9 273 78.8
Ca_14210_v3 Cicer arietinum L. HOM05D005146 ORTHO05D006752 1.5e-124 449.9 271 79.7
Carub.0007s0877 Capsella rubella HOM05D005146 ORTHO05D006752 1.9e-124 449.5 272 80.1
Glyma.07G217500 Glycine max HOM05D005146 ORTHO05D006752 3.3e-124 448.7 271 80.4
BcaC09g51970 Brassica carinata HOM05D005146 ORTHO05D006752 5.6e-124 448.0 277 77.6
BraA01t00610Z Brassica rapa HOM05D005146 ORTHO05D006752 5.6e-124 448.0 272 79.0
Lalb_Chr23g0266181 Lupinus albus HOM05D005146 ORTHO05D006752 5.6e-124 448.0 271 79.0
Psat5g013440 Pisum sativum HOM05D005146 ORTHO05D006752 5.6e-124 448.0 271 79.0
BcaNung05185 Brassica carinata HOM05D005146 ORTHO05D006752 9.5e-124 447.2 272 79.0
C01p07160 Brassica napus HOM05D005146 ORTHO05D006752 9.5e-124 447.2 277 77.6
Phvul.001G002400 Phaseolus vulgaris HOM05D005146 ORTHO05D006752 1.2e-123 446.8 271 80.4
Sp7g29580 Schrenkiella parvula HOM05D005146 ORTHO05D006752 1.2e-123 446.8 277 78.3
A01p06490 Brassica napus HOM05D005146 ORTHO05D006752 2.1e-123 446.0 277 77.6
Glyma.20G014100 Glycine max HOM05D005146 ORTHO05D006752 3.6e-123 445.3 271 79.3
Os03g0355800 Oryza sativa ssp. japonica HOM05D005146 ORTHO05D006752 4.7e-123 444.9 270 75.9
VMungo0251G0853 Vigna mungo HOM05D005146 ORTHO05D006752 8.0e-123 444.1 271 79.3
Lj1g0002754 Lotus japonicus HOM05D005146 ORTHO05D006752 1.4e-122 443.4 271 78.6
Aa31LG2G18510 Aethionema arabicum HOM05D005146 ORTHO05D006752 6.8e-122 441.0 272 79.0
arahy.Tifrunner.gnm1.ann1.DQ6KFY Arachis hypogaea HOM05D005146 ORTHO05D006752 8.9e-122 440.7 271 78.6
Hund05199 Selenicereus undatus HOM05D005146 ORTHO05D006752 1.2e-121 440.3 270 75.9
ATR0797G002 Amborella trichopoda HOM05D005146 ORTHO05D006752 2.0e-121 439.5 270 76.7
arahy.Tifrunner.gnm1.ann1.VN499F Arachis hypogaea HOM05D005146 ORTHO05D006752 2.6e-121 439.1 271 78.6
Lj5g0000481 Lotus japonicus HOM05D005146 ORTHO05D006752 2.6e-121 439.1 271 78.6
Oeu020876.1 Olea europaea HOM05D005146 ORTHO05D006752 3.4e-121 438.7 262 79.0
COL.COLO4_37538 Corchorus olitorius HOM05D005146 ORTHO05D006752 1.3e-120 436.8 257 80.9
arahy.Tifrunner.gnm1.ann1.RM6BI2 Arachis hypogaea HOM05D005146 ORTHO05D006752 4.9e-120 434.9 271 76.8
Ah.08g209140 Amaranthus hybridus HOM05D005146 ORTHO05D006752 1.1e-119 433.7 302 70.5
AUR62019460 Chenopodium quinoa HOM05D005146 ORTHO05D006752 2.4e-119 432.6 270 77.4
unitig_746.g26814 Utricularia gibba HOM05D005146 ORTHO05D006752 5.4e-119 431.4 270 74.8
Aqoxy5G01768 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 1.2e-118 430.3 270 74.4
HPP92_027733 Vanilla planifolia HOM05D005146 ORTHO05D006752 1.6e-118 429.9 271 74.2
Zm00001eb017150 Zea mays HOM05D005146 ORTHO05D006752 2.3e-117 426.0 270 72.6
EL10Ac6g13895 Beta vulgaris HOM05D005146 ORTHO05D006752 3.0e-117 425.6 304 68.4
Duzib150G0501 Durio zibethinus HOM05D005146 ORTHO05D006752 1.1e-116 423.7 279 74.2
Aqoxy6G00492 Aquilegia oxysepala HOM05D005146 ORTHO05D006752 2.8e-115 419.1 261 73.9
arahy.Tifrunner.gnm1.ann1.NX94TN Arachis hypogaea HOM05D005146 ORTHO05D006752 1.1e-114 417.2 301 68.8
Gorai.004G015300 Gossypium raimondii HOM05D005146 ORTHO05D006752 1.4e-114 416.8 279 73.1
Pp3c25_4490 Physcomitrium patens HOM05D005146 ORTHO05D006752 5.2e-114 414.8 271 70.8
Mapoly0107s0028 Marchantia polymorpha HOM05D005146 ORTHO05D006752 2.6e-113 412.5 271 69.0
AagrBONN_evm.TU.Sc2ySwM_117.1420 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.6e-110 403.3 272 66.5
AagrBONN_evm.TU.Sc2ySwM_368.2751 Anthoceros agrestis HOM05D005146 ORTHO05D006752 1.3e-109 400.2 272 66.2
MBI09_g15694_MAGBIO Magnolia biondii HOM05D005146 ORTHO05D006752 1.7e-109 399.8 389 54.2
SalBow3G2629 Salvia bowleyana HOM05D005146 ORTHO05D006752 1.5e-108 396.7 244 77.9
Peaxi162Scf00438g00626 Petunia axillaris HOM05D005146 ORTHO05D006752 2.4e-106 389.4 270 68.9
CDE05G1835 Ceratophyllum demersum HOM05D005146 ORTHO05D006752 3.1e-106 389.0 241 75.9
HPP92_026026 Vanilla planifolia HOM05D005146 ORTHO05D006752 5.8e-105 384.8 244 74.2
vmacro21720 Vaccinium macrocarpon HOM05D005146 ORTHO05D006752 8.4e-104 380.9 226 79.2
SMO146G0393 Selaginella moellendorffii HOM05D005146 ORTHO05D006752 2.1e-102 376.3 271 66.4
RcHm_v2.0_Chr7g0221331 Rosa chinensis HOM05D005146 ORTHO05D006752 5.6e-100 368.2 272 66.9
Hma1.2p1_0638F.1_g193760 Hydrangea macrophylla HOM05D005146 ORTHO05D006752 3.6e-99 365.5 220 77.7
CBR_g41468 Chara braunii HOM05D005146 ORTHO05D006752 1.8e-98 363.2 271 63.8
Lsat_1_v5_gn_2_8681 Lactuca sativa HOM05D004999 ORTHO05D007513 1.5e-97 360.1 222 77.5
CSS0032399 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 1.4e-95 353.6 251 68.9
MCO08G273 Micromonas commoda HOM05D005146 ORTHO05D006752 1.3e-93 347.1 272 59.6
Cre05.g233300 Chlamydomonas reinhardtii HOM05D005146 ORTHO05D006752 1.7e-93 346.7 273 61.9
TAR628G0140 Trochodendron aralioides HOM05D005146 ORTHO05D006752 9.6e-92 340.9 197 80.7
PRCOL_00004436 Prasinoderma coloniale HOM05D005146 ORTHO05D006752 6.4e-88 328.2 288 55.9
C09p44220 Brassica napus HOM05D005146 ORTHO05D006752 2.4e-87 326.2 277 59.9
BolC8t49001H Brassica oleracea HOM05D005146 ORTHO05D006752 2.7e-86 322.8 277 61.4
C08p13630 Brassica napus HOM05D005146 ORTHO05D006752 1.0e-85 320.9 277 61.0
BcaC04g20385 Brassica carinata HOM05D005146 ORTHO05D006752 5.8e-81 305.1 278 57.6
Sc26g0004380 Simmondsia chinensis HOM05D005146 ORTHO05D006752 7.6e-81 304.7 178 80.3
BcaC04g20389 Brassica carinata HOM05D005146 ORTHO05D006752 6.9e-74 281.6 277 53.4
Haze_26822 Corylus avellana HOM05D005146 ORTHO05D006752 6.9e-74 281.6 276 49.3
Oeu039057.1 Olea europaea HOM05D005146 ORTHO05D006752 4.5e-73 278.9 248 59.7
ATR0816G001 Amborella trichopoda HOM05D005146 ORTHO05D006752 9.3e-71 271.2 168 76.8
MSTRG.25237 Avicennia marina HOM05D005146 ORTHO05D006752 1.9e-68 263.5 155 78.1
Lj4A797T61 Lonicera japonica HOM05D005146 ORTHO05D006752 9.0e-66 254.6 152 80.9
Medtr1g107520 Medicago truncatula HOM05D005146 ORTHO05D006752 6.5e-64 248.4 165 74.5
AUR62036170 Chenopodium quinoa HOM05D005146 ORTHO05D006752 3.2e-63 246.1 206 63.6
BolC9t57294H Brassica oleracea HOM05D005146 ORTHO05D006752 1.8e-53 213.8 159 66.0
BcaC04g20387 Brassica carinata HOM05D005146 ORTHO05D006752 3.9e-53 212.6 278 46.4
MELO3C029148.2 Cucumis melo HOM05D005146 ORTHO05D006752 5.1e-53 212.2 178 65.7
Duzib170G0783 Durio zibethinus HOM05D005146 ORTHO05D006752 1.5e-49 200.7 281 44.1
CSS0002428 Camellia sinensis var. sinensis HOM05D005146 ORTHO05D006752 4.2e-47 192.6 273 43.2
Medtr3g114210 Medicago truncatula HOM05D005146 ORTHO05D006752 1.1e-34 151.4 159 56.0
Lj4A797T60 Lonicera japonica HOM05D005146 ORTHO05D006752 1.6e-33 147.5 90 74.4
BolC8t52160H Brassica oleracea HOM05D005146 ORTHO05D032927 1.1e-31 141.4 177 49.7
BcaC07g41610 Brassica carinata HOM05D005146 ORTHO05D032927 1.5e-31 141.0 269 37.9
BcaC04g20388 Brassica carinata HOM05D005146 ORTHO05D006752 3.6e-30 136.3 185 45.9
Oeu039054.1 Olea europaea HOM05D000784 ORTHO05D000116 4.7e-30 136.0 124 54.8
C08p46100 Brassica napus HOM05D005146 ORTHO05D032927 2.8e-27 126.7 98 65.3
Lsat_1_v5_gn_2_8581 Lactuca sativa HOM05D000202 ORTHO05D000117 1.1e-26 124.8 135 46.7
SEGI_30125 Sequoiadendron giganteum HOM05D005146 ORTHO05D006752 7.0e-26 122.1 98 59.2
Lsat_1_v5_gn_2_8661 Lactuca sativa HOM05D000202 ORTHO05D000117 9.1e-26 121.7 135 45.9
MELO3C032066.2 Cucumis melo HOM05D005146 ORTHO05D006752 6.6e-24 115.5 73 76.7
CAN.G1688.3 Capsicum annuum HOM05D005146 ORTHO05D011342 1.6e-17 94.4 57 71.9
MELO3C033356.2 Cucumis melo HOM05D005146 ORTHO05D166957 3.1e-13 80.1 49 81.6
Actinidia16979 Actinidia chinensis HOM05D005146 ORTHO05D006752 2.6e-12 77.0 78 51.3
BcaNung04119 Brassica carinata HOM05D001941 ORTHO05D002198 2.2e-11 73.9 45 77.8
Cfa017682 Carpinus fangiana HOM05D005146 ORTHO05D123472 3.3e-07 60.1 49 65.3


User provided reference genes

Program Settings