Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001128 Sechium edule HOM05D004133 ORTHO05D004683 3.0e-60 235.0 117 100.0
Sed0020599 Sechium edule HOM05D004133 ORTHO05D004683 6.8e-36 154.1 161 57.1
ClCG02G024090 Citrullus lanatus HOM05D004133 ORTHO05D004683 3.8e-31 138.3 167 51.5
MELO3C014691.2 Cucumis melo HOM05D004133 ORTHO05D004683 1.1e-30 136.7 71 90.1
CsaV3_4G023240 Cucumis sativus L. HOM05D004133 ORTHO05D004683 4.3e-30 134.8 167 49.7
Lj2A832T11 Lonicera japonica HOM05D004133 ORTHO05D004683 3.6e-29 131.7 158 48.1
Duzib170G1022 Durio zibethinus HOM05D004133 ORTHO05D004683 4.7e-29 131.3 158 49.4
Gorai.004G011700 Gossypium raimondii HOM05D004133 ORTHO05D004683 8.0e-29 130.6 158 48.1
Atru.chr3.3052 Acer truncatum HOM05D004133 ORTHO05D004683 1.4e-28 129.8 158 48.1
Atru.chr3.3061 Acer truncatum HOM05D004133 ORTHO05D004683 1.4e-28 129.8 158 48.1
QL01p018923 Quercus lobata HOM05D004133 ORTHO05D004683 1.8e-28 129.4 158 49.4
Duzib168G0387 Durio zibethinus HOM05D004133 ORTHO05D004683 2.3e-28 129.0 158 48.7
Cfa010217 Carpinus fangiana HOM05D004133 ORTHO05D004683 3.0e-28 128.6 158 47.5
Haze_23604 Corylus avellana HOM05D004133 ORTHO05D004683 4.0e-28 128.3 158 47.5
Gohir.D08G017300 Gossypium hirsutum HOM05D004133 ORTHO05D004683 4.0e-28 128.3 158 47.5
Manes.11G104780 Manihot esculenta HOM05D004133 ORTHO05D004683 4.0e-28 128.3 158 48.7
PGR119G1432 Punica granatum HOM05D004133 ORTHO05D004683 4.0e-28 128.3 158 46.2
COL.COLO4_25370 Corchorus olitorius HOM05D004133 ORTHO05D004683 5.2e-28 127.9 158 48.7
CiPaw.13G126000 Carya illinoinensis HOM05D004133 ORTHO05D004683 6.8e-28 127.5 158 48.1
Gohir.A08G007200 Gossypium hirsutum HOM05D004133 ORTHO05D004683 8.9e-28 127.1 158 46.8
Sabra04G0127700 Salix brachista HOM05D004133 ORTHO05D004683 1.5e-27 126.3 158 47.5
CSS0023526 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 4.4e-27 124.8 167 44.3
CANSAT54G1788 Cannabis sativa HOM05D004133 ORTHO05D004683 4.4e-27 124.8 158 46.2
THA.LOC104810948 Tarenaya hassleriana HOM05D004133 ORTHO05D004683 4.4e-27 124.8 158 47.5
Actinidia22457 Actinidia chinensis HOM05D004133 ORTHO05D004683 7.5e-27 124.0 158 44.3
HanXRQChr05g0137041 Helianthus annuus HOM05D004133 ORTHO05D004683 1.7e-26 122.9 167 43.7
Potri.004G190600 Populus trichocarpa HOM05D004133 ORTHO05D004683 1.7e-26 122.9 158 47.5
Ah.15g098820 Amaranthus hybridus HOM05D004133 ORTHO05D004683 4.9e-26 121.3 158 44.3
Potri.009G151700 Populus trichocarpa HOM05D004133 ORTHO05D004683 4.9e-26 121.3 71 80.3
GSVIVG01037520001 Vitis vinifera HOM05D004133 ORTHO05D004683 6.4e-26 120.9 167 42.5
Hund18814 Selenicereus undatus HOM05D004133 ORTHO05D004683 8.3e-26 120.6 167 43.1
Prupe.6G148800 Prunus persica HOM05D004133 ORTHO05D004683 1.1e-25 120.2 71 77.5
Sc21g0006690 Simmondsia chinensis HOM05D004133 ORTHO05D004683 1.9e-25 119.4 158 45.6
BcaC03g13851 Brassica carinata HOM05D004133 ORTHO05D004683 3.2e-25 118.6 158 45.6
TAR633G2810 Trochodendron aralioides HOM05D004133 ORTHO05D004683 3.2e-25 118.6 158 45.6
RcHm_v2.0_Chr1g0344781 Rosa chinensis HOM05D004133 ORTHO05D004683 4.1e-25 118.2 71 73.2
TPR.G4594 Trifolium pratense HOM05D004133 ORTHO05D004683 4.1e-25 118.2 158 44.3
BcaB08g36460 Brassica carinata HOM05D004133 ORTHO05D004683 5.4e-25 117.9 168 44.6
Ca_19492_v3 Cicer arietinum L. HOM05D004133 ORTHO05D004683 7.0e-25 117.5 158 44.3
MD03G1160600 Malus domestica HOM05D004133 ORTHO05D004683 7.0e-25 117.5 70 77.1
SalBow3G0269 Salvia bowleyana HOM05D004133 ORTHO05D004683 7.0e-25 117.5 161 43.5
DCAR_012257 Daucus carota HOM05D004133 ORTHO05D004683 1.2e-24 116.7 71 77.5
Eucgr.J00595 Eucalyptus grandis HOM05D004133 ORTHO05D004683 1.2e-24 116.7 166 41.6
Thhalv10013111m.g Eutrema salsugineum HOM05D004133 ORTHO05D004683 1.2e-24 116.7 168 44.6
Lalb_Chr19g0136091 Lupinus albus HOM05D004133 ORTHO05D004683 1.2e-24 116.7 158 43.0
Sp6g23200 Schrenkiella parvula HOM05D004133 ORTHO05D004683 1.2e-24 116.7 168 44.6
EL10Ac7g16263 Beta vulgaris HOM05D004133 ORTHO05D004683 1.6e-24 116.3 167 40.7
Sabra09G0120200 Salix brachista HOM05D004133 ORTHO05D004683 1.6e-24 116.3 71 77.5
arahy.Tifrunner.gnm1.ann1.79DDAD Arachis hypogaea HOM05D004133 ORTHO05D004683 2.0e-24 115.9 158 43.7
CSS0028218 Camellia sinensis var. sinensis HOM05D004133 ORTHO05D004683 2.0e-24 115.9 71 73.2
Dinv32152 Davidia involucrata HOM05D004133 ORTHO05D004683 2.0e-24 115.9 158 44.3
Solyc06g073840.3 Solanum lycopersicum HOM05D004133 ORTHO05D004683 2.0e-24 115.9 161 42.9
C03p12090 Brassica napus HOM05D004133 ORTHO05D004683 2.7e-24 115.5 168 44.0
FAN21G0751 Fragaria x ananassa HOM05D004133 ORTHO05D004683 2.7e-24 115.5 71 74.6
PGSC0003DMG400005939 Solanum tuberosum HOM05D004133 ORTHO05D004683 2.7e-24 115.5 161 42.9
Actinidia06347 Actinidia chinensis HOM05D004133 ORTHO05D004683 3.5e-24 115.2 70 72.9
BolC3t13681H Brassica oleracea HOM05D004133 ORTHO05D004683 3.5e-24 115.2 168 44.6
FAN11G3250 Fragaria x ananassa HOM05D004133 ORTHO05D004683 3.5e-24 115.2 71 73.2
RcHm_v2.0_Chr1g0344561 Rosa chinensis HOM05D004133 ORTHO05D004683 3.5e-24 115.2 71 71.8
RcHm_v2.0_Chr5g0049211 Rosa chinensis HOM05D004133 ORTHO05D004683 3.5e-24 115.2 71 73.2
arahy.Tifrunner.gnm1.ann1.A1UAR7 Arachis hypogaea HOM05D004133 ORTHO05D004683 4.6e-24 114.8 158 43.0
A03p10510 Brassica napus HOM05D004133 ORTHO05D004683 4.6e-24 114.8 168 44.6
BolC9t58332H Brassica oleracea HOM05D004133 ORTHO05D004683 4.6e-24 114.8 168 44.0
BraA03t10363Z Brassica rapa HOM05D004133 ORTHO05D004683 4.6e-24 114.8 168 44.6
FvH4_3g26800 Fragaria vesca HOM05D004133 ORTHO05D004683 4.6e-24 114.8 71 73.2
FAN16G0897 Fragaria x ananassa HOM05D004133 ORTHO05D004683 4.6e-24 114.8 71 73.2
Oeu026353.2 Olea europaea HOM05D004133 ORTHO05D004683 4.6e-24 114.8 161 45.3
BcaB01g04751 Brassica carinata HOM05D004133 ORTHO05D004683 6.0e-24 114.4 167 43.7
CDE10G0036 Ceratophyllum demersum HOM05D004133 ORTHO05D004683 6.0e-24 114.4 158 43.7
Nitab4.5_0002426g0010 Nicotiana tabacum HOM05D004133 ORTHO05D004683 6.0e-24 114.4 167 39.5
TWI31G0797 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 6.0e-24 114.4 70 75.7
AL6G32950 Arabidopsis lyrata HOM05D004133 ORTHO05D004683 7.8e-24 114.0 168 42.9
AT5G21990 Arabidopsis thaliana HOM05D004133 ORTHO05D004683 7.8e-24 114.0 168 43.5
Cc01_g07980 Coffea canephora HOM05D004133 ORTHO05D004683 7.8e-24 114.0 167 42.5
A10p18730 Brassica napus HOM05D004133 ORTHO05D004683 1.0e-23 113.6 168 43.5
BraA10t43953Z Brassica rapa HOM05D004133 ORTHO05D004683 1.0e-23 113.6 168 43.5
Nitab4.5_0002183g0030 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.3e-23 113.2 161 42.9
TAR636G2180 Trochodendron aralioides HOM05D004133 ORTHO05D004683 1.3e-23 113.2 71 74.6
CARHR191540 Cardamine hirsuta HOM05D004133 ORTHO05D004683 1.7e-23 112.8 168 43.5
Hma1.2p1_1811F.1_g303595 Hydrangea macrophylla HOM05D004133 ORTHO05D004683 1.7e-23 112.8 158 44.3
TWI79G1660 Tripterygium wilfordii HOM05D004133 ORTHO05D004683 1.7e-23 112.8 158 44.3
AUR62001582 Chenopodium quinoa HOM05D004133 ORTHO05D004683 2.3e-23 112.5 158 42.4
Ciclev10004601m.g Citrus clementina HOM05D004133 ORTHO05D004683 2.3e-23 112.5 71 74.6
AUR62020201 Chenopodium quinoa HOM05D004133 ORTHO05D004683 3.0e-23 112.1 158 43.0
C09p54680 Brassica napus HOM05D001689 ORTHO05D004683 3.9e-23 111.7 168 43.5
Carub.0006s1963 Capsella rubella HOM05D004133 ORTHO05D004683 3.9e-23 111.7 158 44.3
Glyma.06G308200 Glycine max HOM05D004133 ORTHO05D004683 1.1e-22 110.2 71 69.0
Medtr4g050120 Medicago truncatula HOM05D004133 ORTHO05D004683 1.1e-22 110.2 158 42.4
MSTRG.12403 Avicennia marina HOM05D004133 ORTHO05D004683 1.5e-22 109.8 71 73.2
Glyma.12G096600 Glycine max HOM05D004133 ORTHO05D004683 1.5e-22 109.8 71 70.4
Nitab4.5_0000875g0040 Nicotiana tabacum HOM05D004133 ORTHO05D004683 1.5e-22 109.8 161 42.2
Cpa.g.sc103.47 Carica papaya HOM05D004133 ORTHO05D004683 1.9e-22 109.4 71 73.2
ECA238G1841 Erigeron canadensis HOM05D004133 ORTHO05D004683 1.9e-22 109.4 71 67.6
Lj3g0006419 Lotus japonicus HOM05D004133 ORTHO05D004683 1.9e-22 109.4 71 71.8
Peaxi162Scf00098g01532 Petunia axillaris HOM05D004133 ORTHO05D004683 2.5e-22 109.0 161 41.0
Migut.N02432 Erythranthe guttata HOM05D004133 ORTHO05D004683 7.3e-22 107.5 161 40.4
Phvul.011G101100 Phaseolus vulgaris HOM05D004133 ORTHO05D004683 7.3e-22 107.5 71 67.6
VMungo1127G0510 Vigna mungo HOM05D004133 ORTHO05D004683 7.3e-22 107.5 71 69.0
MSTRG.17668 Avicennia marina HOM05D004133 ORTHO05D004683 9.5e-22 107.1 71 66.2
SGA_v2.0_scaffold16G07524 Striga asiatica HOM05D004133 ORTHO05D004683 1.6e-21 106.3 71 67.6
PSO384G2343 Papaver somniferum HOM05D004133 ORTHO05D004683 2.1e-21 105.9 162 42.0
Psat7g203680 Pisum sativum HOM05D004133 ORTHO05D004683 2.8e-21 105.5 71 67.6
HanXRQChr13g0420391 Helianthus annuus HOM05D004133 ORTHO05D004683 3.6e-21 105.1 104 53.8
Aqoxy1G00601 Aquilegia oxysepala HOM05D004133 ORTHO05D004683 4.7e-21 104.8 71 69.0
Lalb_Chr01g0005781 Lupinus albus HOM05D004133 ORTHO05D004683 4.7e-21 104.8 71 66.2
Rhsim13G0198700 Rhododendron simsii HOM05D004133 ORTHO05D004683 8.0e-21 104.0 63 73.0
Sopen06g030240 Solanum pennellii HOM05D004133 ORTHO05D004683 8.0e-21 104.0 82 59.8
Ah.08g222320 Amaranthus hybridus HOM05D004133 ORTHO05D004683 1.1e-20 103.6 71 64.8
MBI05_g40557_MAGBIO Magnolia biondii HOM05D004133 ORTHO05D004683 1.1e-20 103.6 71 67.6
PSO339G3867 Papaver somniferum HOM05D004133 ORTHO05D004683 1.1e-20 103.6 162 41.4
vmacro04056 Vaccinium macrocarpon HOM05D004133 ORTHO05D004683 2.3e-20 102.4 173 37.0
ATR0697G090 Amborella trichopoda HOM05D004133 ORTHO05D004683 5.2e-20 101.3 70 67.1
HPP92_017668 Vanilla planifolia HOM05D004133 ORTHO05D004683 6.8e-20 100.9 167 38.9
CAN.G1463.21 Capsicum annuum HOM05D004133 ORTHO05D004683 1.5e-19 99.8 82 56.1
SEGI_40011 Sequoiadendron giganteum HOM05D004133 ORTHO05D004683 2.0e-19 99.4 70 62.9
BcaB05g22756 Brassica carinata HOM05D004133 ORTHO05D004683 2.6e-19 99.0 168 41.1
Nn2g14411 Nelumbo nucifera HOM05D004133 ORTHO05D004683 2.6e-19 99.0 70 67.1
Actinidia12904 Actinidia chinensis HOM05D004133 ORTHO05D004683 5.8e-19 97.8 58 75.9
Lsat_1_v5_gn_2_35581 Lactuca sativa HOM05D004133 ORTHO05D004683 1.7e-18 96.3 148 41.2
Aa31LG1G13430 Aethionema arabicum HOM05D004133 ORTHO05D004683 2.9e-18 95.5 63 69.8
Nitab4.5_0006895g0020 Nicotiana tabacum HOM05D004133 ORTHO05D004683 3.7e-18 95.1 64 68.8
unitig_8.g2980 Utricularia gibba HOM05D004133 ORTHO05D004683 1.1e-17 93.6 71 62.0
Zm00001eb300510 Zea mays HOM05D004133 ORTHO05D004683 1.9e-17 92.8 167 36.5
Os07g0161000 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 4.1e-17 91.7 167 35.3
CBR_g30778 Chara braunii HOM05D004133 ORTHO05D004683 1.6e-16 89.7 105 46.7
SMO141G0183 Selaginella moellendorffii HOM05D004133 ORTHO05D004683 6.6e-15 84.3 149 37.6
Pp3c11_16900 Physcomitrium patens HOM05D004133 ORTHO05D004683 1.1e-14 83.6 70 58.6
Mapoly0077s0006 Marchantia polymorpha HOM05D004133 ORTHO05D004683 2.5e-14 82.4 67 58.2
AagrBONN_evm.TU.Sc2ySwM_228.1320 Anthoceros agrestis HOM05D004133 ORTHO05D004683 1.2e-13 80.1 111 45.0
Rhsim01G0198600 Rhododendron simsii HOM05D004133 ORTHO05D004683 1.2e-13 80.1 139 39.6
Peaxi162Scf00259g00213 Petunia axillaris HOM05D004133 ORTHO05D004683 1.6e-13 79.7 54 64.8
BcaC01g06615 Brassica carinata HOM05D004133 ORTHO05D004683 3.6e-13 78.6 166 38.0
Lsat_1_v5_gn_3_115221 Lactuca sativa HOM05D004133 ORTHO05D004683 1.4e-12 76.6 139 38.8
SHI25280 Sapria himalayana HOM05D004133 ORTHO05D004683 3.1e-12 75.5 63 54.0
Os04g0437500 Oryza sativa ssp. japonica HOM05D004133 ORTHO05D004683 9.9e-11 70.5 172 32.0
MCO02G231 Micromonas commoda HOM05D004133 ORTHO05D004683 1.3e-10 70.1 114 37.7
PRCOL_00003816 Prasinoderma coloniale HOM05D004133 ORTHO05D004683 2.9e-10 68.9 111 36.0
Cre02.g092550 Chlamydomonas reinhardtii HOM05D004133 ORTHO05D004683 2.4e-09 65.9 71 42.3
Thecc.09G268600 Theobroma cacao HOM05D004133 ORTHO05D004683 3.0e-07 58.9 126 35.7


User provided reference genes

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