Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001089 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1587.8 837 100.0
Sed0008837 Sechium edule HOM05D004547 ORTHO05D005133 0.0e+00 1493.4 837 93.8
MELO3C006811.2 Cucumis melo HOM05D004547 ORTHO05D005133 0.0e+00 1490.7 837 93.3
CsaV3_3G016130 Cucumis sativus L. HOM05D004547 ORTHO05D005133 0.0e+00 1488.8 837 93.2
ClCG05G007360 Citrullus lanatus HOM05D004547 ORTHO05D005133 0.0e+00 1476.5 830 93.7
CiPaw.03G093300 Carya illinoinensis HOM05D004547 ORTHO05D005133 0.0e+00 1352.0 840 83.5
QL09p005748 Quercus lobata HOM05D004547 ORTHO05D005133 0.0e+00 1339.7 837 83.5
Thecc.03G155600 Theobroma cacao HOM05D004547 ORTHO05D005133 0.0e+00 1338.2 839 82.7
Duzib205G1908 Durio zibethinus HOM05D004547 ORTHO05D005133 0.0e+00 1335.9 839 82.2
Dinv28576 Davidia involucrata HOM05D004547 ORTHO05D005133 0.0e+00 1335.5 839 81.9
Cfa008167 Carpinus fangiana HOM05D004547 ORTHO05D005133 0.0e+00 1333.2 839 83.1
Cpa.g.sc3.324 Carica papaya HOM05D004547 ORTHO05D005133 0.0e+00 1331.2 841 81.1
Prupe.2G277000 Prunus persica HOM05D004547 ORTHO05D005133 0.0e+00 1325.1 840 81.2
Eucgr.A02893 Eucalyptus grandis HOM05D004547 ORTHO05D005133 0.0e+00 1321.2 840 81.1
Manes.06G134600 Manihot esculenta HOM05D004547 ORTHO05D005133 0.0e+00 1319.3 840 81.7
Ciclev10004313m.g Citrus clementina HOM05D004547 ORTHO05D005133 0.0e+00 1318.9 840 81.8
Atru.chr1.728 Acer truncatum HOM05D004547 ORTHO05D005133 0.0e+00 1316.2 840 80.8
RcHm_v2.0_Chr1g0374281 Rosa chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1315.8 840 80.7
GSVIVG01018659001 Vitis vinifera HOM05D004547 ORTHO05D005133 0.0e+00 1314.7 840 81.4
Actinidia31780 Actinidia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1312.7 839 79.9
PGR042G2008 Punica granatum HOM05D004547 ORTHO05D005133 0.0e+00 1309.7 840 79.9
CSS0028755 Camellia sinensis var. sinensis HOM05D004547 ORTHO05D005133 0.0e+00 1308.9 839 80.1
Gorai.008G216000 Gossypium raimondii HOM05D004547 ORTHO05D005133 0.0e+00 1304.7 840 81.4
CANSAT56G3837 Cannabis sativa HOM05D004547 ORTHO05D005133 0.0e+00 1302.7 840 80.5
FvH4_7g27490 Fragaria vesca HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 840 80.2
FAN03G1184 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1301.6 840 80.2
Hma1.2p1_0432F.1_g151760 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 0.0e+00 1301.2 838 79.7
Gohir.D12G200900 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1299.3 840 81.0
Gohir.A12G198300 Gossypium hirsutum HOM05D004547 ORTHO05D005133 0.0e+00 1297.0 840 80.5
FAN01G0567 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1293.5 840 79.8
Rhsim03G0167200 Rhododendron simsii HOM05D004547 ORTHO05D005133 0.0e+00 1289.6 840 79.6
Glyma.09G224000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1288.5 839 80.3
Glyma.12G013000 Glycine max HOM05D004547 ORTHO05D005133 0.0e+00 1287.3 839 80.1
Potri.003G109100 Populus trichocarpa HOM05D004547 ORTHO05D005133 0.0e+00 1286.6 838 80.0
arahy.Tifrunner.gnm1.ann1.TL2CDN Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1284.6 839 80.8
FAN06G1879 Fragaria x ananassa HOM05D004547 ORTHO05D005133 0.0e+00 1282.3 860 78.0
TAR375G0699 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1281.9 839 78.9
arahy.Tifrunner.gnm1.ann1.J7T2TK Arachis hypogaea HOM05D004547 ORTHO05D005133 0.0e+00 1280.4 839 80.8
Phvul.011G016000 Phaseolus vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 839 79.7
THA.LOC104811522 Tarenaya hassleriana HOM05D004547 ORTHO05D005133 0.0e+00 1278.5 838 77.7
Medtr0004s0490 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1277.3 836 79.4
Lj3g0004511 Lotus japonicus HOM05D004547 ORTHO05D005133 0.0e+00 1276.5 839 79.9
VMungo1127G1242 Vigna mungo HOM05D004547 ORTHO05D005133 0.0e+00 1273.8 839 79.4
Ca_19628_v3 Cicer arietinum L. HOM05D004547 ORTHO05D005133 0.0e+00 1273.5 840 80.0
CARHR264160 Cardamine hirsuta HOM05D004547 ORTHO05D005133 0.0e+00 1266.5 838 77.3
Carub.0008s1145 Capsella rubella HOM05D004547 ORTHO05D005133 0.0e+00 1263.1 838 77.2
Aa31sc202G10 Aethionema arabicum HOM05D004547 ORTHO05D005133 0.0e+00 1261.9 835 76.8
AT5G51430 Arabidopsis thaliana HOM05D004547 ORTHO05D005133 0.0e+00 1261.9 838 77.3
AL8G25720 Arabidopsis lyrata HOM05D004547 ORTHO05D005133 0.0e+00 1261.1 838 77.2
Sp6g13590 Schrenkiella parvula HOM05D004547 ORTHO05D005133 0.0e+00 1254.6 838 76.8
Cc02_g04280 Coffea canephora HOM05D004547 ORTHO05D005133 0.0e+00 1249.2 847 76.9
Thhalv10012691m.g Eutrema salsugineum HOM05D004547 ORTHO05D005133 0.0e+00 1248.4 838 76.7
BcaB08g35501 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1244.6 838 76.3
Lj1A979T84 Lonicera japonica HOM05D004547 ORTHO05D005133 0.0e+00 1243.0 839 77.1
Lalb_Chr03g0024271 Lupinus albus HOM05D004547 ORTHO05D005133 0.0e+00 1240.3 839 78.3
Sabra03G0075600 Salix brachista HOM05D004547 ORTHO05D005133 0.0e+00 1236.9 931 71.4
Nn1g01023 Nelumbo nucifera HOM05D004547 ORTHO05D005133 0.0e+00 1235.3 839 75.4
Oeu022486.1 Olea europaea HOM05D004547 ORTHO05D005133 0.0e+00 1232.6 840 75.8
A02p12350 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1231.9 838 75.8
C02p20480 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1231.1 838 75.3
BraA10t43010Z Brassica rapa HOM05D004547 ORTHO05D005133 0.0e+00 1226.8 839 75.4
BcaC04g20676 Brassica carinata HOM05D004547 ORTHO05D005133 0.0e+00 1226.1 838 75.3
A10p09340 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1225.3 839 75.7
C09p40720 Brassica napus HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 839 75.2
Medtr6g005610 Medicago truncatula HOM05D004547 ORTHO05D005133 0.0e+00 1221.5 836 76.2
BolC9t56951H Brassica oleracea HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 839 75.1
PGSC0003DMG400017618 Solanum tuberosum HOM05D004547 ORTHO05D005133 0.0e+00 1220.3 840 74.6
Sc14g0005530 Simmondsia chinensis HOM05D004547 ORTHO05D005133 0.0e+00 1216.8 836 76.1
Migut.F00479 Erythranthe guttata HOM05D004547 ORTHO05D005133 0.0e+00 1216.1 840 74.5
Sopen05g002910 Solanum pennellii HOM05D004547 ORTHO05D005133 0.0e+00 1215.7 840 74.5
Aqoxy2G03231 Aquilegia oxysepala HOM05D004547 ORTHO05D005133 0.0e+00 1215.3 841 75.4
TWI39G0203 Tripterygium wilfordii HOM05D004547 ORTHO05D005133 0.0e+00 1213.7 839 75.9
EL10Ac2g04890 Beta vulgaris HOM05D004547 ORTHO05D005133 0.0e+00 1204.1 842 74.3
HanXRQChr16g0512771 Helianthus annuus HOM05D004547 ORTHO05D005133 0.0e+00 1203.3 837 74.3
PSO266G0090 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1200.3 852 74.8
Lsat_1_v5_gn_9_52061 Lactuca sativa HOM05D004547 ORTHO05D005133 0.0e+00 1198.7 838 74.8
ECA232G2122 Erigeron canadensis HOM05D004547 ORTHO05D005133 0.0e+00 1198.0 834 74.0
Peaxi162Scf00023g01214 Petunia axillaris HOM05D004547 ORTHO05D005133 0.0e+00 1192.2 843 74.1
MSTRG.8826 Avicennia marina HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 840 73.6
SalBow5G1900 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1191.4 857 72.2
PSO384G4058 Papaver somniferum HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 852 74.4
SalBow5G5604 Salvia bowleyana HOM05D004547 ORTHO05D005133 0.0e+00 1191.0 857 72.2
Nitab4.5_0004665g0060 Nicotiana tabacum HOM05D004547 ORTHO05D005133 0.0e+00 1182.5 840 73.0
Hund13892 Selenicereus undatus HOM05D004547 ORTHO05D005133 0.0e+00 1176.0 805 75.7
CAN.G16.15 Capsicum annuum HOM05D004547 ORTHO05D005133 0.0e+00 1174.1 840 72.1
DCAR_020189 Daucus carota HOM05D004547 ORTHO05D005133 0.0e+00 1172.5 841 73.0
ATR0317G078 Amborella trichopoda HOM05D004547 ORTHO05D005133 0.0e+00 1166.8 842 70.9
Ah.10g036230 Amaranthus hybridus HOM05D004547 ORTHO05D005133 0.0e+00 1160.6 839 71.8
TPR.G20262 Trifolium pratense HOM05D004547 ORTHO05D005133 0.0e+00 1151.7 841 73.5
MD01G1182800 Malus domestica HOM05D004547 ORTHO05D005133 0.0e+00 1148.7 724 81.2
TAR374G0871 Trochodendron aralioides HOM05D004547 ORTHO05D005133 0.0e+00 1148.3 744 78.8
vmacro06799 Vaccinium macrocarpon HOM05D004547 ORTHO05D005133 0.0e+00 1147.5 861 72.4
AUR62022938 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1140.2 857 70.4
AUR62012299 Chenopodium quinoa HOM05D004547 ORTHO05D005133 0.0e+00 1131.7 839 71.3
SGA_v2.0_scaffold44G16547 Striga asiatica HOM05D004547 ORTHO05D005133 0.0e+00 1112.1 997 61.3
unitig_37.g11930 Utricularia gibba HOM05D004547 ORTHO05D005133 5.7e-312 1073.5 841 66.8
Medtr6g005670 Medicago truncatula HOM05D004547 ORTHO05D005133 1.1e-302 1043.1 834 68.6
Psat0s2825g0040 Pisum sativum HOM05D004547 ORTHO05D005133 1.3e-298 1029.6 681 77.4
Zm00001eb389950 Zea mays HOM05D004547 ORTHO05D005133 2.1e-288 995.7 721 71.0
Mapoly0007s0274 Marchantia polymorpha HOM05D004547 ORTHO05D005133 3.5e-251 872.1 858 54.8
Pp3c7_60 Physcomitrium patens HOM05D004547 ORTHO05D005133 5.0e-250 868.2 857 55.7
Hma1.2p1_0432F.1_g151750 Hydrangea macrophylla HOM05D004547 ORTHO05D005133 9.9e-238 827.4 522 79.9
SMO134G0015 Selaginella moellendorffii HOM05D004547 ORTHO05D005133 8.4e-229 797.7 840 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1032 Anthoceros agrestis HOM05D004547 ORTHO05D005133 1.0e-226 790.8 750 57.5
BcaC03g14608 Brassica carinata HOM05D004547 ORTHO05D005133 3.9e-226 788.9 544 73.5
CARHR150020 Cardamine hirsuta HOM05D004547 ORTHO05D005133 1.9e-225 786.6 606 66.3
HPP92_005319 Vanilla planifolia HOM05D004547 ORTHO05D005133 8.7e-218 761.1 612 67.6
Nitab4.5_0000895g0220 Nicotiana tabacum HOM05D004547 ORTHO05D005133 9.0e-215 751.1 545 69.5
FAN06G1216 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.6e-211 738.8 512 76.6
CBR_g31542 Chara braunii HOM05D004547 ORTHO05D005133 1.4e-196 690.6 899 45.3
COL.COLO4_14121 Corchorus olitorius HOM05D004547 ORTHO05D005133 2.2e-189 666.8 428 81.5
CDE04G0004 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.5e-185 653.3 561 63.1
MD07G1253600 Malus domestica HOM05D004547 ORTHO05D005133 3.1e-183 646.4 444 77.0
FAN10G1756 Fragaria x ananassa HOM05D004547 ORTHO05D005133 6.7e-170 602.1 441 73.2
COL.COLO4_14122 Corchorus olitorius HOM05D004547 ORTHO05D005133 8.5e-157 558.5 343 83.4
HPP92_005328 Vanilla planifolia HOM05D004547 ORTHO05D005133 8.6e-149 531.9 395 71.6
Solyc05g006950.4 Solanum lycopersicum HOM05D004547 ORTHO05D005133 7.2e-148 528.9 400 68.0
CDE04G0650 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 3.1e-122 443.7 372 65.1
BraA02t06300Z Brassica rapa HOM05D004547 ORTHO05D005133 5.4e-119 433.0 292 78.4
SHI14003 Sapria himalayana HOM05D004547 ORTHO05D000023 5.1e-117 426.4 341 66.0
Oeu042559.1 Olea europaea HOM05D004547 ORTHO05D005133 1.9e-108 397.9 427 55.0
Nitab4.5_0019601g0010 Nicotiana tabacum HOM05D004547 ORTHO05D005133 1.9e-103 381.3 265 77.7
A10p09160 Brassica napus HOM05D004547 ORTHO05D005133 1.0e-101 375.6 235 79.6
BolC2t08183H Brassica oleracea HOM05D004547 ORTHO05D005133 3.0e-101 374.0 235 79.1
PRCOL_00005609 Prasinoderma coloniale HOM05D004547 ORTHO05D005133 1.2e-97 362.1 863 31.1
Cre02.g086700 Chlamydomonas reinhardtii HOM05D004547 ORTHO05D005133 2.4e-74 284.6 862 28.5
SEGI_24302 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 3.4e-73 280.8 211 67.8
SEGI_08321 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 2.2e-67 261.5 200 67.5
CDE04G2539 Ceratophyllum demersum HOM05D004547 ORTHO05D005133 2.8e-67 261.2 268 55.2
SEGI_05738 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 1.5e-65 255.4 230 60.9
Os06g0669600 Oryza sativa ssp. japonica HOM05D004547 ORTHO05D005133 8.8e-61 239.6 179 72.1
HPP92_005318 Vanilla planifolia HOM05D004547 ORTHO05D005133 9.1e-58 229.6 289 47.4
QL10p003704 Quercus lobata HOM05D004547 ORTHO05D005133 1.0e-53 216.1 209 64.1
Actinidia24695 Actinidia chinensis HOM05D004547 ORTHO05D005133 6.3e-51 206.8 183 59.0
TPR.G196 Trifolium pratense HOM05D004547 ORTHO05D005133 2.5e-47 194.9 125 80.0
MD07G1253700 Malus domestica HOM05D004547 ORTHO05D005133 4.8e-43 180.6 105 91.4
A10p09220 Brassica napus HOM05D004547 ORTHO05D005133 6.3e-43 180.3 122 71.3
BraA10t43007Z Brassica rapa HOM05D004547 ORTHO05D005133 5.9e-41 173.7 104 82.7
BraA10t42999Z Brassica rapa HOM05D004547 ORTHO05D005133 3.8e-40 171.0 104 81.7
Psat7g163200 Pisum sativum HOM05D004547 ORTHO05D005133 1.8e-34 152.1 130 59.2
BraA10t43002Z Brassica rapa HOM05D004547 ORTHO05D005133 1.7e-32 145.6 96 71.9
A10p09300 Brassica napus HOM05D004547 ORTHO05D005133 3.8e-32 144.4 96 72.9
TAR082G0001 Trochodendron aralioides HOM05D004547 ORTHO05D005133 8.6e-32 143.3 97 73.2
Sc14g0005510 Simmondsia chinensis HOM05D004547 ORTHO05D005133 1.6e-30 139.0 95 74.7
CAN.G74.49 Capsicum annuum HOM05D004547 ORTHO05D005133 1.4e-29 136.0 231 38.5
SEGI_13446 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 5.2e-29 134.0 95 71.6
Actinidia01052 Actinidia chinensis HOM05D004547 ORTHO05D005133 2.0e-25 122.1 95 66.3
FvH4_7g19100 Fragaria vesca HOM05D004547 ORTHO05D005133 7.8e-25 120.2 87 80.5
GSVIVG01036042001 Vitis vinifera HOM05D004547 ORTHO05D005133 7.3e-23 113.6 152 45.4
CAN.G280.11 Capsicum annuum HOM05D004547 ORTHO05D005133 1.0e-21 109.8 213 35.7
CAN.G689.6 Capsicum annuum HOM05D004547 ORTHO05D005133 8.9e-21 106.7 82 68.3
CAN.G903.1 Capsicum annuum HOM05D004547 ORTHO05D005133 2.0e-20 105.5 245 33.5
Nitab4.5_0004558g0010 Nicotiana tabacum HOM05D004547 ORTHO05D016189 3.7e-19 101.3 121 46.3
SEGI_29591 Sequoiadendron giganteum HOM05D004547 ORTHO05D005133 8.3e-19 100.1 99 45.5
FAN06G3837 Fragaria x ananassa HOM05D004547 ORTHO05D005133 4.1e-18 97.8 72 77.8
Haze_23095 Corylus avellana HOM05D001506 ORTHO05D000455 5.4e-18 97.4 133 52.6
Duzib147G0620 Durio zibethinus HOM05D004547 ORTHO05D005133 7.0e-18 97.1 90 62.2
Nitab4.5_0011021g0010 Nicotiana tabacum HOM05D001522 ORTHO05D016189 5.4e-10 70.9 158 34.2
CAN.G118.7 Capsicum annuum HOM05D004547 ORTHO05D005133 1.6e-09 69.3 85 48.2
Pp3c11_26770 Physcomitrium patens HOM05D004547 ORTHO05D005133 1.0e-08 66.6 65 53.8
CAN.G689.5 Capsicum annuum HOM05D004547 ORTHO05D005133 6.2e-06 57.4 61 47.5


User provided reference genes

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