Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001084 Sechium edule HOM05D000205 ORTHO05D373243 2.0e-29 131.7 65 100.0
MELO3C010946.2 Cucumis melo HOM05D000205 ORTHO05D002459 2.1e-10 68.6 52 73.1
ClCG08G015040 Citrullus lanatus HOM05D000205 ORTHO05D002459 2.7e-10 68.2 52 73.1
CsaV3_2G028740 Cucumis sativus L. HOM05D000205 ORTHO05D002459 6.1e-10 67.0 52 73.1
Sed0006218 Sechium edule HOM05D000205 ORTHO05D002459 1.0e-09 66.2 52 69.2
SHI08151 Sapria himalayana HOM05D000205 ORTHO05D002459 5.1e-09 63.9 53 67.9
Dinv39428 Davidia involucrata HOM05D000205 ORTHO05D002459 6.7e-09 63.5 52 67.3
Lj4A39G61 Lonicera japonica HOM05D000205 ORTHO05D002459 1.1e-08 62.8 52 67.3
TAR625G1496 Trochodendron aralioides HOM05D000205 ORTHO05D002459 1.1e-08 62.8 52 63.5
Actinidia22539 Actinidia chinensis HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
BcaC03g15547 Brassica carinata HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
A02p19790 Brassica napus HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
C02p32390 Brassica napus HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
BolC2t09266H Brassica oleracea HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
BraA02t07013Z Brassica rapa HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
Potri.002G259900 Populus trichocarpa HOM05D000205 ORTHO05D002459 1.5e-08 62.4 52 69.2
CiPaw.15G079000 Carya illinoinensis HOM05D000205 ORTHO05D002459 1.9e-08 62.0 52 69.2
Sabra02G0197700 Salix brachista HOM05D000205 ORTHO05D002459 1.9e-08 62.0 52 67.3
TWI12G1314 Tripterygium wilfordii HOM05D000205 ORTHO05D002459 1.9e-08 62.0 52 67.3
CAN.G1226.25 Capsicum annuum HOM05D000205 ORTHO05D002459 3.3e-08 61.2 52 65.4
Cc10_g02770 Coffea canephora HOM05D000205 ORTHO05D002459 4.3e-08 60.8 52 67.3
DCAR_019533 Daucus carota HOM05D000205 ORTHO05D002459 4.3e-08 60.8 52 61.5
CANSAT25G0091 Cannabis sativa HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
Dinv36090 Davidia involucrata HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 63.5
QL02p008848 Quercus lobata HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
Sp5g30380 Schrenkiella parvula HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
Hund05337 Selenicereus undatus HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
Sc15g0006970 Simmondsia chinensis HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 65.4
Solyc04g080460.3 Solanum lycopersicum HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 65.4
Sopen04g034050 Solanum pennellii HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 65.4
TWI36G1579 Tripterygium wilfordii HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
vmacro21648 Vaccinium macrocarpon HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 67.3
GSVIVG01009719001 Vitis vinifera HOM05D000205 ORTHO05D002459 5.7e-08 60.5 52 65.4
MSTRG.24286 Avicennia marina HOM05D000205 ORTHO05D002459 7.4e-08 60.1 52 65.4
BcaB02g07017 Brassica carinata HOM05D000205 ORTHO05D002459 7.4e-08 60.1 52 65.4
BcaB05g24893 Brassica carinata HOM05D000205 ORTHO05D002459 7.4e-08 60.1 52 67.3
Gohir.A06G009800 Gossypium hirsutum HOM05D000205 ORTHO05D002459 7.4e-08 60.1 52 65.4
PGSC0003DMG400003735 Solanum tuberosum HOM05D000205 ORTHO05D002459 7.4e-08 60.1 52 65.4
Atru.chr13.457 Acer truncatum HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 65.4
Cpa.g.sc925.1 Carica papaya HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 67.3
HanXRQChr04g0105161 Helianthus annuus HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 63.5
Lsat_1_v5_gn_5_27561 Lactuca sativa HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 63.5
Oeu049937.1 Olea europaea HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 63.5
Rhsim06G0032600 Rhododendron simsii HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 65.4
Sc26g0003590 Simmondsia chinensis HOM05D000205 ORTHO05D002459 9.7e-08 59.7 52 65.4
MD15G1026400 Malus domestica HOM05D000205 ORTHO05D002459 1.3e-07 59.3 52 63.5
Nitab4.5_0001091g0090 Nicotiana tabacum HOM05D000205 ORTHO05D002459 1.3e-07 59.3 52 61.5
Nitab4.5_0005614g0010 Nicotiana tabacum HOM05D000205 ORTHO05D002459 1.3e-07 59.3 52 61.5
RcHm_v2.0_Chr6g0301141 Rosa chinensis HOM05D000205 ORTHO05D002459 1.3e-07 59.3 52 65.4
Duzib093G1200 Durio zibethinus HOM05D000205 ORTHO05D002459 1.6e-07 58.9 52 65.4
FvH4_2g39720 Fragaria vesca HOM05D000205 ORTHO05D002459 1.6e-07 58.9 52 63.5
SalBow8G1529 Salvia bowleyana HOM05D000205 ORTHO05D002459 1.6e-07 58.9 52 63.5
Aa31LG4G5450 Aethionema arabicum HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
AL2G35130 Arabidopsis lyrata HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
AT1G75220 Arabidopsis thaliana HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
A07p40810 Brassica napus HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
C06p49200 Brassica napus HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
BolC6t39953H Brassica oleracea HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
Carub.0002s2204 Capsella rubella HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
CARHR068550 Cardamine hirsuta HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 65.4
Cfa018162 Carpinus fangiana HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 63.5
Haze_17956 Corylus avellana HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 63.5
Manes.05G158900 Manihot esculenta HOM05D000205 ORTHO05D002459 2.2e-07 58.5 52 63.5
BraA07t31623Z Brassica rapa HOM05D000205 ORTHO05D002459 2.8e-07 58.2 52 65.4
Thhalv10018460m.g Eutrema salsugineum HOM05D000205 ORTHO05D002459 2.8e-07 58.2 52 65.4
HanXRQChr05g0153611 Helianthus annuus HOM05D000205 ORTHO05D002459 2.8e-07 58.2 52 59.6
Lsat_1_v5_gn_1_18841 Lactuca sativa HOM05D000205 ORTHO05D002459 2.8e-07 58.2 52 63.5
BcaC08g45590 Brassica carinata HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
A07p28950 Brassica napus HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
BraA07t30537Z Brassica rapa HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
Eucgr.F01888 Eucalyptus grandis HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
Gorai.010G009900 Gossypium raimondii HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
Prupe.1G378500 Prunus persica HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 63.5
SalBow7G4139 Salvia bowleyana HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 61.5
Thecc.08G027900 Theobroma cacao HOM05D000205 ORTHO05D002459 3.7e-07 57.8 52 61.5
Nitab4.5_0002224g0090 Nicotiana tabacum HOM05D000205 ORTHO05D002459 4.8e-07 57.4 52 63.5
Peaxi162Scf00931g00029 Petunia axillaris HOM05D000205 ORTHO05D002459 4.8e-07 57.4 52 63.5
THA.LOC104813831 Tarenaya hassleriana HOM05D000205 ORTHO05D002459 4.8e-07 57.4 52 63.5
DCAR_013823 Daucus carota HOM05D000205 ORTHO05D002459 6.3e-07 57.0 52 61.5
Oeu029843.1 Olea europaea HOM05D000205 ORTHO05D002459 6.3e-07 57.0 52 61.5
THA.LOC104809058 Tarenaya hassleriana HOM05D000205 ORTHO05D002459 6.3e-07 57.0 52 63.5
CSS0001474 Camellia sinensis var. sinensis HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 63.5
MELO3C003830.2 Cucumis melo HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
Duzib041G0105 Durio zibethinus HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
ECA247G0847 Erigeron canadensis HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
Migut.C00744 Erythranthe guttata HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 57.7
FAN15G2019 Fragaria x ananassa HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
FAN20G0246 Fragaria x ananassa HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
FAN27G0536 Fragaria x ananassa HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 61.5
PGSC0003DMG400015460 Solanum tuberosum HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 59.6
SGA_v2.0_scaffold201G41415 Striga asiatica HOM05D000205 ORTHO05D002459 8.2e-07 56.6 52 57.7
Duzib116G0055 Durio zibethinus HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 63.5
HanXRQChr02g0040801 Helianthus annuus HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 61.5
Nn5g29628 Nelumbo nucifera HOM05D000205 ORTHO05D002459 1.1e-06 56.2 50 62.0
Nitab4.5_0004186g0070 Nicotiana tabacum HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 61.5
Sed0007271 Sechium edule HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 59.6
Sopen12g031060 Solanum pennellii HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 59.6
TAR381G0717 Trochodendron aralioides HOM05D000205 ORTHO05D002459 1.1e-06 56.2 52 57.7
C06p32720 Brassica napus HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 61.5
BolC6t38396H Brassica oleracea HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 61.5
Gohir.A03G079000 Gossypium hirsutum HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 61.5
Gohir.D02G094800 Gossypium hirsutum HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 61.5
Gorai.005G108100 Gossypium raimondii HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 61.5
Solyc12g089180.2 Solanum lycopersicum HOM05D000205 ORTHO05D002459 1.4e-06 55.8 52 57.7
A06p15640 Brassica napus HOM05D000205 ORTHO05D002459 1.8e-06 55.5 50 64.0
BraA06t24673Z Brassica rapa HOM05D000205 ORTHO05D002459 1.8e-06 55.5 50 64.0
Ca_13368_v3 Cicer arietinum L. HOM05D000205 ORTHO05D002459 1.8e-06 55.5 51 60.8
CsaV3_3G045190 Cucumis sativus L. HOM05D000205 ORTHO05D002459 1.8e-06 55.5 52 61.5
Medtr1g022315 Medicago truncatula HOM05D000205 ORTHO05D002459 1.8e-06 55.5 51 60.8
Nn1g04970 Nelumbo nucifera HOM05D000205 ORTHO05D002459 1.8e-06 55.5 50 60.0
PSO541G1842 Papaver somniferum HOM05D000205 ORTHO05D002459 1.8e-06 55.5 52 57.7
PSO675G9314 Papaver somniferum HOM05D000205 ORTHO05D002459 1.8e-06 55.5 52 57.7
TPR.G20169 Trifolium pratense HOM05D000205 ORTHO05D002459 1.8e-06 55.5 51 60.8
arahy.Tifrunner.gnm1.ann1.L8CL1H Arachis hypogaea HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 61.5
arahy.Tifrunner.gnm1.ann1.Q0100G Arachis hypogaea HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 61.5
arahy.Tifrunner.gnm1.ann1.X4KYJQ Arachis hypogaea HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 61.5
EL10As7g23730 Beta vulgaris HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 59.6
Migut.N00488 Erythranthe guttata HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 57.7
Lalb_Chr05g0227601 Lupinus albus HOM05D000205 ORTHO05D002459 3.1e-06 54.7 52 55.8
Psat5g026400 Pisum sativum HOM05D000205 ORTHO05D002459 3.1e-06 54.7 51 58.8
VMungo0647G2434 Vigna mungo HOM05D000205 ORTHO05D002459 3.1e-06 54.7 51 58.8
AL1G32200 Arabidopsis lyrata HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
AT1G19450 Arabidopsis thaliana HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
BcaB07g31943 Brassica carinata HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
BcaC05g25824 Brassica carinata HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
C05p17870 Brassica napus HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
BolC5t30491H Brassica oleracea HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
Carub.0001s1902 Capsella rubella HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
CARHR020030 Cardamine hirsuta HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
ECA246G4802 Erigeron canadensis HOM05D000205 ORTHO05D002459 4.1e-06 54.3 52 59.6
Thhalv10007486m.g Eutrema salsugineum HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
QL06p046338 Quercus lobata HOM05D000205 ORTHO05D002459 4.1e-06 54.3 53 64.2
Sp1g17340 Schrenkiella parvula HOM05D000205 ORTHO05D002459 4.1e-06 54.3 50 64.0
AUR62038815 Chenopodium quinoa HOM05D000205 ORTHO05D002459 5.3e-06 53.9 52 59.6
AUR62042734 Chenopodium quinoa HOM05D000205 ORTHO05D002459 5.3e-06 53.9 52 59.6
Duzib147G1685 Durio zibethinus HOM05D000205 ORTHO05D002459 5.3e-06 53.9 53 62.3
Duzib264G0529 Durio zibethinus HOM05D000205 ORTHO05D002459 5.3e-06 53.9 50 58.0
Eucgr.F01571 Eucalyptus grandis HOM05D000205 ORTHO05D002459 5.3e-06 53.9 51 60.8
Gohir.A11G183800 Gossypium hirsutum HOM05D000205 ORTHO05D002459 5.3e-06 53.9 50 60.0
Gohir.D11G190300 Gossypium hirsutum HOM05D000205 ORTHO05D002459 5.3e-06 53.9 50 60.0
Gorai.007G202700 Gossypium raimondii HOM05D000205 ORTHO05D002459 5.3e-06 53.9 50 60.0
Manes.02G094100 Manihot esculenta HOM05D000205 ORTHO05D002459 5.3e-06 53.9 53 60.4
Phvul.001G014000 Phaseolus vulgaris HOM05D000205 ORTHO05D002459 5.3e-06 53.9 51 58.8
HPP92_009673 Vanilla planifolia HOM05D000205 ORTHO05D002459 5.3e-06 53.9 50 60.0
GSVIVG01018949001 Vitis vinifera HOM05D000205 ORTHO05D002459 5.3e-06 53.9 53 62.3
Gohir.A11G043600 Gossypium hirsutum HOM05D000205 ORTHO05D002459 6.9e-06 53.5 50 62.0
Gohir.D11G047100 Gossypium hirsutum HOM05D000205 ORTHO05D002459 6.9e-06 53.5 50 62.0
Gorai.007G050600 Gossypium raimondii HOM05D000205 ORTHO05D002459 6.9e-06 53.5 50 62.0
MD08G1030900 Malus domestica HOM05D000205 ORTHO05D002459 6.9e-06 53.5 52 61.5
Aqoxy6G01127 Aquilegia oxysepala HOM05D000205 ORTHO05D002459 9.0e-06 53.1 50 60.0
A09p59320 Brassica napus HOM05D000205 ORTHO05D002459 9.0e-06 53.1 50 64.0
BraA09t41314Z Brassica rapa HOM05D000205 ORTHO05D002459 9.0e-06 53.1 50 64.0
CiPaw.01G040100 Carya illinoinensis HOM05D000205 ORTHO05D002459 9.0e-06 53.1 53 64.2
Glyma.14G074100 Glycine max HOM05D000205 ORTHO05D002459 9.0e-06 53.1 51 60.8
Glyma.17G251100 Glycine max HOM05D000205 ORTHO05D002459 9.0e-06 53.1 51 60.8
Potri.007G024300 Populus trichocarpa HOM05D000205 ORTHO05D002459 9.0e-06 53.1 50 58.0


User provided reference genes

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