Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001081 Sechium edule HOM05D003707 ORTHO05D004309 2.3e-182 642.1 330 100.0
CsaV3_3G047770 Cucumis sativus L. HOM05D003707 ORTHO05D004309 1.2e-135 486.9 331 77.3
Sed0003858 Sechium edule HOM05D003707 ORTHO05D004309 1.7e-132 476.5 331 77.0
MELO3C003545.2 Cucumis melo HOM05D003707 ORTHO05D004309 6.4e-132 474.6 331 75.5
ClCG11G014370 Citrullus lanatus HOM05D003707 ORTHO05D004309 7.1e-123 444.5 331 73.7
Cfa017898 Carpinus fangiana HOM05D003707 ORTHO05D004309 4.8e-103 378.6 325 61.2
QL02p002269 Quercus lobata HOM05D003707 ORTHO05D004309 1.8e-97 360.1 329 57.8
Duzib093G2197 Durio zibethinus HOM05D003707 ORTHO05D004309 7.4e-96 354.8 329 57.1
Duzib041G0396 Durio zibethinus HOM05D003707 ORTHO05D004309 3.7e-95 352.4 329 56.2
Haze_18252 Corylus avellana HOM05D003707 ORTHO05D004309 4.8e-95 352.1 325 59.1
Gohir.A06G032900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.5e-91 339.7 327 55.0
Thecc.08G101000 Theobroma cacao HOM05D003707 ORTHO05D004309 7.1e-91 338.2 331 55.3
MD15G1377500 Malus domestica HOM05D003707 ORTHO05D004309 4.6e-90 335.5 331 54.4
Lj4C96G4 Lonicera japonica HOM05D003707 ORTHO05D004309 1.0e-89 334.3 332 55.1
CiPaw.16G032500 Carya illinoinensis HOM05D003707 ORTHO05D004309 1.3e-89 334.0 329 55.6
Prupe.1G524200 Prunus persica HOM05D003707 ORTHO05D004309 3.9e-89 332.4 331 55.0
CiPaw.15G045200 Carya illinoinensis HOM05D003707 ORTHO05D004309 4.3e-88 328.9 328 55.5
MD08G1190000 Malus domestica HOM05D003707 ORTHO05D004309 5.7e-88 328.6 331 53.5
Gohir.D05G225900 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.2e-87 326.6 323 53.9
Gorai.009G233400 Gossypium raimondii HOM05D003707 ORTHO05D004309 2.2e-87 326.6 323 54.2
CSS0029872 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 2.8e-87 326.2 331 52.9
Gohir.A05G223200 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.8e-87 326.2 323 53.6
Hma1.2p1_1180F.1_g264680 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 6.3e-87 325.1 335 54.9
Rhsim06G0077200 Rhododendron simsii HOM05D003707 ORTHO05D004309 6.3e-87 325.1 383 49.9
GSVIVG01009092001 Vitis vinifera HOM05D003707 ORTHO05D004309 6.3e-87 325.1 332 54.2
Nitab4.5_0003374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 3.1e-86 322.8 331 52.6
Gorai.010G037300 Gossypium raimondii HOM05D003707 ORTHO05D004309 4.1e-86 322.4 329 53.2
TWI56G1284 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 6.9e-86 321.6 330 52.7
Hma1.2p1_1568F.1_g291110 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 9.0e-86 321.2 325 52.6
Gohir.D06G033800 Gossypium hirsutum HOM05D003707 ORTHO05D004309 2.6e-85 319.7 329 52.6
Nitab4.5_0009374g0030 Nicotiana tabacum HOM05D003707 ORTHO05D004309 1.3e-84 317.4 331 53.2
vmacro11166 Vaccinium macrocarpon HOM05D003707 ORTHO05D004309 1.3e-84 317.4 331 54.4
Cpa.g.sc36.188 Carica papaya HOM05D003707 ORTHO05D004309 5.5e-83 312.0 328 52.1
Manes.18G063100 Manihot esculenta HOM05D003707 ORTHO05D004309 5.5e-83 312.0 331 52.9
CAN.G1173.6 Capsicum annuum HOM05D003707 ORTHO05D004309 2.7e-82 309.7 331 51.4
Sopen04g029730 Solanum pennellii HOM05D003707 ORTHO05D004309 3.6e-82 309.3 331 51.1
Solyc04g074760.3 Solanum lycopersicum HOM05D003707 ORTHO05D004309 3.9e-81 305.8 331 51.1
TWI12G0071 Tripterygium wilfordii HOM05D003707 ORTHO05D004309 3.9e-81 305.8 332 50.6
FvH4_5g36300 Fragaria vesca HOM05D003707 ORTHO05D004309 6.7e-81 305.1 332 51.8
FAN04G1986 Fragaria x ananassa HOM05D003707 ORTHO05D004309 5.7e-80 302.0 332 52.1
RcHm_v2.0_Chr7g0238321 Rosa chinensis HOM05D003707 ORTHO05D004309 4.8e-79 298.9 336 51.2
Glyma.06G100100 Glycine max HOM05D003707 ORTHO05D004309 1.4e-78 297.4 332 50.9
PGR031G2053 Punica granatum HOM05D003707 ORTHO05D004309 1.5e-77 293.9 330 50.6
Potri.002G101400 Populus trichocarpa HOM05D003707 ORTHO05D004309 2.0e-77 293.5 338 49.7
arahy.Tifrunner.gnm1.ann1.K5H584 Arachis hypogaea HOM05D003707 ORTHO05D004309 3.4e-77 292.7 330 51.2
Ciclev10001810m.g Citrus clementina HOM05D003707 ORTHO05D004309 3.4e-77 292.7 331 50.8
arahy.Tifrunner.gnm1.ann1.NXYL2L Arachis hypogaea HOM05D003707 ORTHO05D004309 1.3e-76 290.8 330 51.2
Oeu024817.1 Olea europaea HOM05D003707 ORTHO05D004309 1.3e-76 290.8 334 50.6
PGSC0003DMG400030841 Solanum tuberosum HOM05D003707 ORTHO05D004309 6.5e-76 288.5 332 48.8
Atru.chr13.1112 Acer truncatum HOM05D003707 ORTHO05D004309 8.5e-76 288.1 336 51.2
Glyma.02G209600 Glycine max HOM05D003707 ORTHO05D004309 7.2e-75 285.0 319 52.7
Eucgr.F00380 Eucalyptus grandis HOM05D003707 ORTHO05D004309 4.7e-74 282.3 331 46.2
Glyma.14G177700 Glycine max HOM05D003707 ORTHO05D004309 1.4e-73 280.8 318 50.6
MSTRG.22171 Avicennia marina HOM05D003707 ORTHO05D004309 2.3e-73 280.0 332 50.6
Lsat_1_v5_gn_6_105560 Lactuca sativa HOM05D003707 ORTHO05D004309 2.3e-73 280.0 332 47.9
Cc00_g22270 Coffea canephora HOM05D003707 ORTHO05D004309 3.9e-73 279.3 332 47.3
HanXRQChr05g0163201 Helianthus annuus HOM05D003707 ORTHO05D004309 3.9e-73 279.3 331 47.1
Actinidia10349 Actinidia chinensis HOM05D003707 ORTHO05D004309 8.8e-73 278.1 332 49.7
EL10Ac1g01138 Beta vulgaris HOM05D003707 ORTHO05D004309 8.8e-73 278.1 331 47.4
Actinidia29599 Actinidia chinensis HOM05D003707 ORTHO05D004309 1.1e-72 277.7 329 47.7
Migut.N02874 Erythranthe guttata HOM05D003707 ORTHO05D004309 1.7e-71 273.9 333 48.9
PSO782G1937 Papaver somniferum HOM05D003707 ORTHO05D004309 4.8e-71 272.3 388 42.5
THA.LOC104816564 Tarenaya hassleriana HOM05D003707 ORTHO05D004309 6.3e-71 271.9 333 49.5
Lj1g0011682 Lotus japonicus HOM05D003707 ORTHO05D004309 8.2e-71 271.6 330 49.4
ECA246G0538 Erigeron canadensis HOM05D003707 ORTHO05D004309 1.8e-70 270.4 331 48.3
VMungo1309G1468 Vigna mungo HOM05D003707 ORTHO05D004309 3.1e-70 269.6 331 48.9
Sabra02G0079500 Salix brachista HOM05D003707 ORTHO05D004309 4.1e-70 269.2 402 42.3
PGR031G0663 Punica granatum HOM05D003707 ORTHO05D004309 3.5e-69 266.2 329 47.4
FAN18G3842 Fragaria x ananassa HOM05D003707 ORTHO05D004309 7.7e-69 265.0 284 52.5
FAN13G1833 Fragaria x ananassa HOM05D003707 ORTHO05D004309 2.2e-68 263.5 284 52.1
Ca_16005_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 2.9e-68 263.1 327 47.4
Aa31LG9G14730 Aethionema arabicum HOM05D003707 ORTHO05D004309 6.5e-68 261.9 331 48.6
DCAR_005285 Daucus carota HOM05D003707 ORTHO05D004309 6.1e-66 255.4 327 46.2
PSO063G2842 Papaver somniferum HOM05D003707 ORTHO05D004309 3.9e-65 252.7 388 40.7
CSS0001361 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 8.8e-65 251.5 331 46.2
CSS0014867 Camellia sinensis var. sinensis HOM05D003707 ORTHO05D004309 1.5e-64 250.8 331 46.2
Phvul.009G033700 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.4e-64 249.2 322 47.5
Lalb_Chr04g0253021 Lupinus albus HOM05D003707 ORTHO05D004309 2.8e-63 246.5 329 45.3
Psat2g069400 Pisum sativum HOM05D003707 ORTHO05D004309 4.8e-63 245.7 325 45.5
Hund16884 Selenicereus undatus HOM05D003707 ORTHO05D004309 4.8e-63 245.7 332 44.3
SGA_v2.0_scaffold4G02188 Striga asiatica HOM05D003707 ORTHO05D004309 1.4e-62 244.2 332 44.9
HanXRQChr10g0278171 Helianthus annuus HOM05D003707 ORTHO05D004309 1.8e-62 243.8 331 44.4
CARHR260110 Cardamine hirsuta HOM05D003707 ORTHO05D004309 2.4e-62 243.4 322 46.0
Lalb_Chr11g0065241 Lupinus albus HOM05D003707 ORTHO05D004309 7.0e-62 241.9 306 48.4
SalBow2G0015 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.0e-62 241.9 332 46.1
SalBow2G2952 Salvia bowleyana HOM05D003707 ORTHO05D004309 7.0e-62 241.9 332 46.1
VMungo0647G1227 Vigna mungo HOM05D003707 ORTHO05D004309 1.6e-61 240.7 329 48.3
Phvul.008G177200 Phaseolus vulgaris HOM05D003707 ORTHO05D004309 4.5e-61 239.2 322 47.8
Dinv07080 Davidia involucrata HOM05D003707 ORTHO05D004309 1.7e-60 237.3 340 44.1
TPR.G12497 Trifolium pratense HOM05D003707 ORTHO05D004309 9.4e-59 231.5 369 41.5
ECA247G2086 Erigeron canadensis HOM05D003707 ORTHO05D004309 3.6e-58 229.6 325 41.5
Glyma.04G098500 Glycine max HOM05D003707 ORTHO05D004309 3.6e-58 229.6 274 47.1
MSTRG.24439 Avicennia marina HOM05D003707 ORTHO05D004309 8.0e-58 228.4 269 50.9
BcaB01g02805 Brassica carinata HOM05D003707 ORTHO05D004309 8.0e-58 228.4 335 45.1
Sp6g08460 Schrenkiella parvula HOM05D003707 ORTHO05D004309 1.0e-57 228.0 322 45.0
AL6G41440 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 6.8e-57 225.3 327 43.4
Peaxi162Scf00139g00014 Petunia axillaris HOM05D003707 ORTHO05D004309 8.8e-57 224.9 340 43.8
TPR.G6353 Trifolium pratense HOM05D003707 ORTHO05D004309 8.8e-57 224.9 333 41.7
Psat5g050280 Pisum sativum HOM05D003707 ORTHO05D004309 1.2e-56 224.6 337 40.1
Thhalv10028816m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 4.4e-56 222.6 264 48.5
unitig_578.g16186 Utricularia gibba HOM05D003707 ORTHO05D004309 4.4e-56 222.6 339 43.4
BcaB02g06540 Brassica carinata HOM05D003707 ORTHO05D004309 7.5e-56 221.9 297 44.4
Nn4g24800 Nelumbo nucifera HOM05D003707 ORTHO05D004309 4.1e-54 216.1 389 41.4
BraA03t12047Z Brassica rapa HOM05D003707 ORTHO05D004309 4.5e-53 212.6 362 40.3
AT4G09060 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 1.0e-52 211.5 329 41.9
Ca_16033_v3 Cicer arietinum L. HOM05D003707 ORTHO05D004309 3.8e-52 209.5 351 38.5
Medtr3g099600 Medicago truncatula HOM05D003707 ORTHO05D004309 5.0e-52 209.1 335 39.7
Thhalv10008342m.g Eutrema salsugineum HOM05D003707 ORTHO05D004309 1.9e-51 207.2 302 43.0
C05p12640 Brassica napus HOM05D003707 ORTHO05D004309 5.5e-51 205.7 289 42.9
Sp1g13060 Schrenkiella parvula HOM05D003707 ORTHO05D004309 2.1e-50 203.8 303 44.2
BraA06t24253Z Brassica rapa HOM05D003707 ORTHO05D004309 6.1e-50 202.2 290 42.1
unitig_8.g4846 Utricularia gibba HOM05D003707 ORTHO05D004309 4.0e-49 199.5 279 43.0
Carub.0006s2764 Capsella rubella HOM05D003707 ORTHO05D004309 2.6e-48 196.8 330 40.6
BcaC01g04732 Brassica carinata HOM05D003707 ORTHO05D004309 4.4e-48 196.1 333 42.6
A09p29580 Brassica napus HOM05D003707 ORTHO05D004309 4.4e-48 196.1 329 40.1
BraA09t38526Z Brassica rapa HOM05D003707 ORTHO05D004309 4.4e-48 196.1 329 40.1
C03p34360 Brassica napus HOM05D003707 ORTHO05D004309 7.5e-48 195.3 333 42.3
AUR62027820 Chenopodium quinoa HOM05D003707 ORTHO05D004309 7.5e-48 195.3 263 44.5
A06p10740 Brassica napus HOM05D003707 ORTHO05D004309 9.8e-48 194.9 290 41.4
COL.COLO4_11998 Corchorus olitorius HOM05D003707 ORTHO05D004309 9.8e-48 194.9 331 39.0
AT1G14680 Arabidopsis thaliana HOM05D003707 ORTHO05D004309 2.8e-47 193.4 304 42.4
AUR62018979 Chenopodium quinoa HOM05D003707 ORTHO05D004309 1.8e-46 190.7 262 44.3
Carub.0001s1444 Capsella rubella HOM05D003707 ORTHO05D004309 2.4e-46 190.3 310 41.0
A03p28420 Brassica napus HOM05D003707 ORTHO05D004309 4.1e-46 189.5 333 40.2
MD08G1189700 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-46 189.1 195 52.8
BolC3t15746H Brassica oleracea HOM05D003707 ORTHO05D004309 9.1e-46 188.3 362 39.8
BcaC05g25387 Brassica carinata HOM05D003707 ORTHO05D004309 1.3e-44 184.5 303 40.6
Hund26994 Selenicereus undatus HOM05D003707 ORTHO05D004309 7.2e-43 178.7 292 40.1
CARHR015180 Cardamine hirsuta HOM05D003707 ORTHO05D004309 1.2e-42 177.9 305 40.0
Aqoxy3G04171 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 4.7e-42 176.0 389 34.7
Oeu029729.1 Olea europaea HOM05D003707 ORTHO05D004309 3.0e-41 173.3 152 59.9
CANSAT25G0959 Cannabis sativa HOM05D003707 ORTHO05D004309 1.2e-40 171.4 325 36.9
AL1G26650 Arabidopsis lyrata HOM05D003707 ORTHO05D004309 1.7e-39 167.5 303 38.0
RcHm_v2.0_Chr3g0481851 Rosa chinensis HOM05D003707 ORTHO05D004309 2.2e-39 167.2 146 60.3
BcaB01g01380 Brassica carinata HOM05D003707 ORTHO05D004309 4.9e-39 166.0 331 39.9
Duzib114G0708 Durio zibethinus HOM05D003707 ORTHO05D004309 2.0e-37 160.6 152 54.6
HanXRQChr17g0556331 Helianthus annuus HOM05D003707 ORTHO05D004309 6.6e-36 155.6 210 41.9
RcHm_v2.0_Chr5g0049351 Rosa chinensis HOM05D003707 ORTHO05D004309 2.8e-34 150.2 156 56.4
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 1.0e-33 148.3 139 55.4
ATR0618G286 Amborella trichopoda HOM05D003707 ORTHO05D004309 2.3e-33 147.1 311 34.1
MBI06_g46882_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-33 146.4 154 50.0
MBI06_g47948_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 4.0e-33 146.4 154 50.0
BolC5t30008H Brassica oleracea HOM05D000624 ORTHO05D000495 5.2e-33 146.0 236 40.7
MBI06_g34539_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 2.6e-32 143.7 278 36.7
MBI03_g38469_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 5.8e-32 142.5 367 31.1
CDE02G0255 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 2.9e-31 140.2 154 46.1
HPP92_025845 Vanilla planifolia HOM05D003707 ORTHO05D004309 4.9e-31 139.4 329 32.5
MD08G1190200 Malus domestica HOM05D003707 ORTHO05D004309 5.4e-30 136.0 223 39.5
Oeu029730.1 Olea europaea HOM05D003707 ORTHO05D004309 3.5e-29 133.3 177 43.5
ClCG08G011330 Citrullus lanatus HOM05D003707 ORTHO05D004309 6.6e-28 129.0 258 36.4
RcHm_v2.0_Chr7g0238301 Rosa chinensis HOM05D003707 ORTHO05D004309 8.6e-28 128.6 127 54.3
RcHm_v2.0_Chr5g0045621 Rosa chinensis HOM05D003707 ORTHO05D004309 1.5e-27 127.9 193 45.1
Sc23g0000420 Simmondsia chinensis HOM05D003707 ORTHO05D004309 2.5e-27 127.1 263 33.1
Hma1.2p1_0526F.1_g172810 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.3e-25 120.6 180 43.3
BcaC07g41551 Brassica carinata HOM05D003707 ORTHO05D032288 8.9e-25 118.6 264 36.4
Cpa.g.sc36.189 Carica papaya HOM05D003707 ORTHO05D004309 1.2e-24 118.2 229 38.4
Actinidia33120 Actinidia chinensis HOM05D003707 ORTHO05D004309 9.8e-24 115.2 197 38.6
RcHm_v2.0_Chr3g0481861 Rosa chinensis HOM05D003707 ORTHO05D004309 3.7e-23 113.2 134 49.3
RcHm_v2.0_Chr5g0045611 Rosa chinensis HOM05D003707 ORTHO05D004309 2.4e-22 110.5 135 48.9
EL10Ac4g09478 Beta vulgaris HOM05D029458 ORTHO05D004309 4.1e-22 109.8 87 59.8
MBI03_g47917_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.0e-20 105.1 373 26.0
C08p45530 Brassica napus HOM05D000624 ORTHO05D000495 1.9e-19 100.9 156 41.0
BolC8t52105H Brassica oleracea HOM05D000624 ORTHO05D000495 1.9e-19 100.9 156 41.0
Medtr5g064800 Medicago truncatula HOM05D009584 ORTHO05D011650 9.5e-19 98.6 220 36.4
Duzib116G0740 Durio zibethinus HOM05D003707 ORTHO05D004309 6.2e-18 95.9 105 50.5
Haze_21792 Corylus avellana HOM05D003707 ORTHO05D004309 8.9e-17 92.0 84 56.0
CDE05G1426 Ceratophyllum demersum HOM05D003707 ORTHO05D004309 1.9e-14 84.3 219 32.9
Os02g0831400 Oryza sativa ssp. japonica HOM05D003707 ORTHO05D004309 4.1e-14 83.2 273 29.3
C09p37650 Brassica napus HOM05D003707 ORTHO05D004309 5.4e-14 82.8 216 33.8
BolC9t56595H Brassica oleracea HOM05D003707 ORTHO05D004309 5.4e-14 82.8 216 33.8
Hma1.2p1_0526F.1_g172800 Hydrangea macrophylla HOM05D003707 ORTHO05D004309 2.1e-13 80.9 48 75.0
Zm00001eb259540 Zea mays HOM05D003707 ORTHO05D004309 5.1e-12 76.3 330 26.7
BcaC04g20946 Brassica carinata HOM05D003707 ORTHO05D004309 5.6e-11 72.8 207 33.8
RcHm_v2.0_Chr5g0040961 Rosa chinensis HOM05D003707 ORTHO05D004309 3.6e-10 70.1 78 50.0
BcaB02g06537 Brassica carinata HOM05D003707 ORTHO05D004309 6.2e-10 69.3 52 63.5
RcHm_v2.0_Chr5g0044811 Rosa chinensis HOM05D003707 ORTHO05D004309 2.6e-08 63.9 60 53.3
MELO3C030322.2 Cucumis melo HOM05D003707 ORTHO05D004309 7.6e-08 62.4 183 29.5
MBI12_g20562_MAGBIO Magnolia biondii HOM05D003707 ORTHO05D004309 1.3e-07 61.6 73 46.6
Mapoly0003s0015 Marchantia polymorpha HOM05D019185 ORTHO05D030113 1.1e-06 58.5 86 37.2


User provided reference genes

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