Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001059 Sechium edule HOM05D005230 ORTHO05D006506 3.8e-58 228.4 157 100.0
ClCG03G014290 Citrullus lanatus HOM05D005230 ORTHO05D006506 2.1e-24 116.3 101 94.1
Sed0024170 Sechium edule HOM05D005230 ORTHO05D006506 5.2e-23 111.7 101 93.1
CsaV3_1G041930 Cucumis sativus L. HOM05D005230 ORTHO05D006506 6.8e-23 111.3 150 69.3
Manes.05G199900 Manihot esculenta HOM05D005230 ORTHO05D006506 1.5e-22 110.2 101 89.1
Hund07409 Selenicereus undatus HOM05D005230 ORTHO05D006506 2.6e-22 109.4 97 88.7
Manes.01G177100 Manihot esculenta HOM05D005230 ORTHO05D006506 7.5e-22 107.8 102 87.3
Migut.D00707 Erythranthe guttata HOM05D005230 ORTHO05D006506 1.3e-21 107.1 100 88.0
Eucgr.B03758 Eucalyptus grandis HOM05D005230 ORTHO05D006506 1.7e-21 106.7 101 89.1
COL.COLO4_33253 Corchorus olitorius HOM05D005230 ORTHO05D006506 2.2e-21 106.3 101 86.1
Thecc.09G252100 Theobroma cacao HOM05D005230 ORTHO05D006506 2.2e-21 106.3 101 86.1
Cpa.g.sc34.203 Carica papaya HOM05D005230 ORTHO05D006506 2.8e-21 105.9 101 88.1
Lj4g0004497 Lotus japonicus HOM05D005230 ORTHO05D006506 2.8e-21 105.9 109 79.8
MELO3C015608.2 Cucumis melo HOM05D005230 ORTHO05D006506 3.7e-21 105.5 150 67.3
Duzib168G0825 Durio zibethinus HOM05D005230 ORTHO05D006506 3.7e-21 105.5 101 85.1
Haze_23295 Corylus avellana HOM05D005230 ORTHO05D006506 4.8e-21 105.1 101 89.1
Nitab4.5_0002161g0080 Nicotiana tabacum HOM05D005230 ORTHO05D006506 4.8e-21 105.1 100 85.0
TWI31G0483 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 1.1e-20 104.0 101 86.1
SalBow6G0054 Salvia bowleyana HOM05D005230 ORTHO05D006506 1.4e-20 103.6 100 86.0
Ah.06g194900 Amaranthus hybridus HOM05D005230 ORTHO05D006506 1.8e-20 103.2 97 83.5
CAN.G280.6 Capsicum annuum HOM05D005230 ORTHO05D006506 1.8e-20 103.2 100 86.0
Lalb_Chr07g0186541 Lupinus albus HOM05D005230 ORTHO05D006506 1.8e-20 103.2 98 88.8
Nn7g36961 Nelumbo nucifera HOM05D005230 ORTHO05D006506 1.8e-20 103.2 100 86.0
Sc16g0010870 Simmondsia chinensis HOM05D005230 ORTHO05D006506 1.8e-20 103.2 101 83.2
Lsat_1_v5_gn_2_32160 Lactuca sativa HOM05D005230 ORTHO05D006506 2.4e-20 102.8 98 87.8
Potri.001G271800 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.4e-20 102.8 98 79.6
Potri.009G066400 Populus trichocarpa HOM05D005230 ORTHO05D006506 2.4e-20 102.8 98 79.6
Sabra16G0167000 Salix brachista HOM05D005230 ORTHO05D006506 2.4e-20 102.8 98 79.6
TWI75G0256 Tripterygium wilfordii HOM05D005230 ORTHO05D006506 2.4e-20 102.8 101 80.2
QL01p016185 Quercus lobata HOM05D005230 ORTHO05D006506 3.1e-20 102.4 145 68.3
MSTRG.21320 Avicennia marina HOM05D005230 ORTHO05D006506 4.1e-20 102.1 100 83.0
CANSAT54G1170 Cannabis sativa HOM05D005230 ORTHO05D006506 4.1e-20 102.1 101 85.1
CiPaw.13G147000 Carya illinoinensis HOM05D005230 ORTHO05D006506 4.1e-20 102.1 102 87.3
Prupe.4G269500 Prunus persica HOM05D005230 ORTHO05D006506 4.1e-20 102.1 101 86.1
Dinv29329 Davidia involucrata HOM05D005230 ORTHO05D006506 5.4e-20 101.7 100 86.0
Cc01_g07300 Coffea canephora HOM05D005230 ORTHO05D006506 9.1e-20 100.9 101 83.2
Nitab4.5_0002567g0160 Nicotiana tabacum HOM05D005230 ORTHO05D006506 9.1e-20 100.9 100 53.0
CSS0009799 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.2e-19 100.5 100 85.0
CSS0035138 Camellia sinensis var. sinensis HOM05D005230 ORTHO05D006506 1.2e-19 100.5 100 85.0
Duzib150G1312 Durio zibethinus HOM05D005230 ORTHO05D006506 1.2e-19 100.5 101 84.2
Sabra09G0049500 Salix brachista HOM05D005230 ORTHO05D006506 1.2e-19 100.5 98 80.6
Aqoxy1G00076 Aquilegia oxysepala HOM05D005230 ORTHO05D006506 2.7e-19 99.4 100 82.0
Psat7g073480 Pisum sativum HOM05D005230 ORTHO05D006506 2.7e-19 99.4 98 83.7
Cfa009930 Carpinus fangiana HOM05D005230 ORTHO05D006506 3.5e-19 99.0 101 87.1
DCAR_031608 Daucus carota HOM05D005230 ORTHO05D006506 3.5e-19 99.0 100 80.0
PSO339G0973 Papaver somniferum HOM05D005230 ORTHO05D006506 3.5e-19 99.0 98 86.7
PSO384G0943 Papaver somniferum HOM05D005230 ORTHO05D006506 3.5e-19 99.0 98 86.7
ECA238G4724 Erigeron canadensis HOM05D005230 ORTHO05D006506 5.9e-19 98.2 98 81.6
MD03G1163000 Malus domestica HOM05D005230 ORTHO05D006506 5.9e-19 98.2 101 84.2
GSVIVG01002283001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.7e-19 97.8 101 83.2
GSVIVG01020254001 Vitis vinifera HOM05D005230 ORTHO05D006506 7.7e-19 97.8 101 83.2
Glyma.05G155700 Glycine max HOM05D005230 ORTHO05D006506 1.0e-18 97.4 98 86.7
Oeu025950.1 Olea europaea HOM05D005230 ORTHO05D006506 1.0e-18 97.4 98 79.6
Aa31LG1G8850 Aethionema arabicum HOM05D005230 ORTHO05D006506 1.3e-18 97.1 98 84.7
Glyma.08G113500 Glycine max HOM05D005230 ORTHO05D006506 1.3e-18 97.1 98 85.7
CDE08G0498 Ceratophyllum demersum HOM05D005230 ORTHO05D006506 2.3e-18 96.3 101 49.5
SGA_v2.0_scaffold29G12151 Striga asiatica HOM05D005230 ORTHO05D006506 5.0e-18 95.1 100 76.0
HanXRQChr13g0402151 Helianthus annuus HOM05D005230 ORTHO05D006506 1.5e-17 93.6 97 83.5
Rhsim13G0231000 Rhododendron simsii HOM05D005230 ORTHO05D006506 1.9e-17 93.2 98 83.7
PGSC0003DMG400027416 Solanum tuberosum HOM05D005230 ORTHO05D006506 1.9e-17 93.2 100 82.0
Phvul.002G235800 Phaseolus vulgaris HOM05D005230 ORTHO05D006506 2.5e-17 92.8 98 83.7
Ca_17953_v3 Cicer arietinum L. HOM05D005230 ORTHO05D006506 3.3e-17 92.4 59 81.4
Oeu032061.2 Olea europaea HOM05D005230 ORTHO05D006506 3.3e-17 92.4 100 78.0
FvH4_1g25390 Fragaria vesca HOM05D005230 ORTHO05D006506 4.2e-17 92.0 101 76.2
FAN19G0408 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.2e-17 92.0 101 76.2
FAN28G1729 Fragaria x ananassa HOM05D005230 ORTHO05D006506 4.2e-17 92.0 101 76.2
HPP92_016891 Vanilla planifolia HOM05D005230 ORTHO05D006506 4.2e-17 92.0 59 81.4
Haze_23300 Corylus avellana HOM05D005230 ORTHO05D006506 5.5e-17 91.7 59 79.7
FAN23G0348 Fragaria x ananassa HOM05D005230 ORTHO05D006506 5.5e-17 91.7 101 76.2
Os06g0338900 Oryza sativa ssp. japonica HOM05D005230 ORTHO05D006506 5.5e-17 91.7 98 76.5
FAN26G2809 Fragaria x ananassa HOM05D005230 ORTHO05D006506 7.2e-17 91.3 98 82.7
MBI13_g00890_MAGBIO Magnolia biondii HOM05D005230 ORTHO05D006506 7.2e-17 91.3 59 81.4
vmacro04223 Vaccinium macrocarpon HOM05D005230 ORTHO05D006506 7.2e-17 91.3 98 82.7
VMungo0251G0349 Vigna mungo HOM05D005230 ORTHO05D006506 7.2e-17 91.3 59 79.7
Solyc11g072090.2 Solanum lycopersicum HOM05D005230 ORTHO05D006506 9.5e-17 90.9 100 81.0
Sopen11g029740 Solanum pennellii HOM05D005230 ORTHO05D006506 9.5e-17 90.9 100 81.0
TPR.G24369 Trifolium pratense HOM05D005230 ORTHO05D006506 1.2e-16 90.5 59 79.7
arahy.Tifrunner.gnm1.ann1.554KFZ Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-16 90.1 59 78.0
arahy.Tifrunner.gnm1.ann1.YWPQ0A Arachis hypogaea HOM05D005230 ORTHO05D006506 1.6e-16 90.1 59 78.0
Medtr8g085640 Medicago truncatula HOM05D005230 ORTHO05D006506 1.6e-16 90.1 93 84.9
Peaxi162Scf00978g00317 Petunia axillaris HOM05D005230 ORTHO05D006506 2.8e-16 89.4 100 77.0
Actinidia06848 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.7e-16 88.6 98 82.7
Actinidia16258 Actinidia chinensis HOM05D005230 ORTHO05D006506 4.7e-16 88.6 98 82.7
Ciclev10015197m.g Citrus clementina HOM05D005230 ORTHO05D006506 4.7e-16 88.6 59 78.0
AUR62006575 Chenopodium quinoa HOM05D005230 ORTHO05D006506 6.1e-16 88.2 98 82.7
PGR102G1412 Punica granatum HOM05D005230 ORTHO05D006506 6.1e-16 88.2 61 73.8
unitig_0.g309 Utricularia gibba HOM05D005230 ORTHO05D006506 6.1e-16 88.2 101 73.3
AUR62000229 Chenopodium quinoa HOM05D005230 ORTHO05D006506 8.0e-16 87.8 98 81.6
SEGI_36393 Sequoiadendron giganteum HOM05D005230 ORTHO05D006506 1.0e-15 87.4 59 74.6
THA.LOC104811208 Tarenaya hassleriana HOM05D005230 ORTHO05D006506 1.0e-15 87.4 59 76.3
Atru.chr3.2845 Acer truncatum HOM05D005230 ORTHO05D006506 1.4e-15 87.0 59 78.0
A10p20220 Brassica napus HOM05D005230 ORTHO05D006506 1.4e-15 87.0 98 81.6
BraA10t44093Z Brassica rapa HOM05D005230 ORTHO05D006506 1.4e-15 87.0 98 81.6
AT5G19485 Arabidopsis thaliana HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
A02p05570 Brassica napus HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
BNapus_Darmor_BZH_scaffold_38p02380 Brassica napus HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
BolC2t06957H Brassica oleracea HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
CARHR193430 Cardamine hirsuta HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
Thhalv10013503m.g Eutrema salsugineum HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
Lj2C810G6 Lonicera japonica HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
Sp6g24920 Schrenkiella parvula HOM05D005230 ORTHO05D006506 2.3e-15 86.3 59 76.3
ATR0307G025 Amborella trichopoda HOM05D005230 ORTHO05D006506 3.0e-15 85.9 100 77.0
AL6G30990 Arabidopsis lyrata HOM05D005230 ORTHO05D006506 5.2e-15 85.1 59 74.6
Carub.0006s1783 Capsella rubella HOM05D005230 ORTHO05D006506 5.2e-15 85.1 59 74.6
RcHm_v2.0_Chr2g0123421 Rosa chinensis HOM05D005230 ORTHO05D006506 5.2e-15 85.1 101 73.3
BraA02t05508Z Brassica rapa HOM05D005230 ORTHO05D006506 2.0e-14 83.2 59 72.9
EL10Ac4g10073 Beta vulgaris HOM05D005230 ORTHO05D006506 4.4e-14 82.0 59 69.5
Mapoly0070s0045 Marchantia polymorpha HOM05D005230 ORTHO05D006506 3.7e-13 79.0 59 64.4
Pp3c16_600 Physcomitrium patens HOM05D005230 ORTHO05D006506 6.3e-13 78.2 97 73.2
Gorai.006G123300 Gossypium raimondii HOM05D005230 ORTHO05D006506 1.8e-12 76.6 84 89.3
Gohir.A08G009200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.1e-12 75.9 59 67.8
Gohir.D08G019200 Gossypium hirsutum HOM05D005230 ORTHO05D006506 3.1e-12 75.9 59 67.8
Gohir.A09G109300 Gossypium hirsutum HOM05D005230 ORTHO05D006506 4.1e-12 75.5 84 89.3
Zm00001eb051600 Zea mays HOM05D005230 ORTHO05D006506 5.4e-12 75.1 59 67.8
Gorai.004G013700 Gossypium raimondii HOM05D005230 ORTHO05D006506 7.0e-12 74.7 59 67.8
SMO117G0151 Selaginella moellendorffii HOM05D005230 ORTHO05D006506 7.0e-12 74.7 59 61.0
Gohir.D09G105900 Gossypium hirsutum HOM05D005230 ORTHO05D006506 1.2e-11 73.9 84 89.3
Mapoly0070s0046 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-11 73.9 100 55.0
Duzib150G0729 Durio zibethinus HOM05D005230 ORTHO05D006506 2.0e-11 73.2 59 64.4
BolC9t58535H Brassica oleracea HOM05D005230 ORTHO05D006506 1.0e-10 70.9 47 76.6
BcaC04g24210 Brassica carinata HOM05D005230 ORTHO05D006506 1.7e-10 70.1 46 78.3
Mapoly0050s0012 Marchantia polymorpha HOM05D005230 ORTHO05D006506 6.6e-10 68.2 59 59.3
Mapoly0050s0011 Marchantia polymorpha HOM05D005230 ORTHO05D006506 1.2e-08 63.9 100 36.0
Dinv24611 Davidia involucrata HOM05D005230 ORTHO05D006506 1.4e-07 60.5 42 78.6
C09p56810 Brassica napus HOM05D005230 ORTHO05D006506 1.8e-07 60.1 78 85.9
Nn7g36957 Nelumbo nucifera HOM05D005230 ORTHO05D006506 4.0e-07 58.9 33 90.9


User provided reference genes

Program Settings