Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0001021 Sechium edule HOM05D007061 ORTHO05D009017 1.0e-196 689.9 347 100.0
CsaV3_6G013460 Cucumis sativus L. HOM05D007061 ORTHO05D009017 9.0e-145 517.3 291 89.3
ClCG02G018710 Citrullus lanatus HOM05D007061 ORTHO05D009017 3.8e-143 511.9 291 89.0
MELO3C019630.2 Cucumis melo HOM05D007061 ORTHO05D009017 3.8e-143 511.9 291 88.3
TWI59G0237 Tripterygium wilfordii HOM05D007061 ORTHO05D009017 1.2e-125 453.8 294 75.2
RcHm_v2.0_Chr5g0023411 Rosa chinensis HOM05D007061 ORTHO05D009017 3.6e-125 452.2 292 77.4
QL04p093744 Quercus lobata HOM05D007061 ORTHO05D009017 4.7e-125 451.8 321 72.9
Thecc.07G189200 Theobroma cacao HOM05D007061 ORTHO05D009017 4.7e-125 451.8 298 74.8
FvH4_3g14100 Fragaria vesca HOM05D007061 ORTHO05D009017 8.0e-125 451.1 292 76.4
FAN11G3441 Fragaria x ananassa HOM05D007061 ORTHO05D009017 8.0e-125 451.1 292 76.4
CANSAT35G1572 Cannabis sativa HOM05D007061 ORTHO05D009017 6.7e-124 448.0 291 76.6
Potri.010G173800 Populus trichocarpa HOM05D007061 ORTHO05D009017 1.5e-123 446.8 294 75.9
Atru.chr1.57 Acer truncatum HOM05D007061 ORTHO05D009017 4.4e-123 445.3 290 76.6
CiPaw.11G057200 Carya illinoinensis HOM05D007061 ORTHO05D009017 7.4e-123 444.5 291 76.6
TAR627G0473 Trochodendron aralioides HOM05D007061 ORTHO05D009017 3.7e-122 442.2 289 76.8
Gorai.001G051600 Gossypium raimondii HOM05D007061 ORTHO05D009017 6.3e-122 441.4 300 73.0
Gohir.D07G048400 Gossypium hirsutum HOM05D007061 ORTHO05D009017 8.2e-122 441.0 298 73.2
Sabra10G0133700 Salix brachista HOM05D007061 ORTHO05D009017 1.4e-121 440.3 294 74.8
Duzib213G0730 Durio zibethinus HOM05D007061 ORTHO05D009017 1.2e-120 437.2 301 72.8
Ciclev10004974m.g Citrus clementina HOM05D007061 ORTHO05D009017 1.6e-120 436.8 289 75.4
Manes.16G047900 Manihot esculenta HOM05D007061 ORTHO05D009017 2.6e-120 436.0 290 76.2
MD10G1216400 Malus domestica HOM05D007061 ORTHO05D009017 3.8e-119 432.2 285 74.4
Nn7g38366 Nelumbo nucifera HOM05D007061 ORTHO05D009017 5.0e-119 431.8 289 74.7
PGR044G2241 Punica granatum HOM05D007061 ORTHO05D009017 1.5e-118 430.3 288 72.9
Eucgr.K03462 Eucalyptus grandis HOM05D007061 ORTHO05D009017 1.9e-118 429.9 291 72.5
THA.LOC104810275 Tarenaya hassleriana HOM05D007061 ORTHO05D009017 4.2e-118 428.7 291 72.5
Hma1.2p1_0151F.1_g067030 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 7.2e-118 427.9 288 74.0
Lj3g0003258 Lotus japonicus HOM05D007061 ORTHO05D009017 1.2e-117 427.2 291 72.5
VMungo1127G1118 Vigna mungo HOM05D007061 ORTHO05D009017 6.1e-117 424.9 307 70.0
Dinv42463 Davidia involucrata HOM05D007061 ORTHO05D009017 8.0e-117 424.5 278 75.9
Aqoxy2G00253 Aquilegia oxysepala HOM05D007061 ORTHO05D009017 1.8e-116 423.3 290 74.5
TPR.G9404 Trifolium pratense HOM05D007061 ORTHO05D009017 6.8e-116 421.4 284 73.2
arahy.Tifrunner.gnm1.ann1.69KP4R Arachis hypogaea HOM05D007061 ORTHO05D009017 8.8e-116 421.0 291 71.8
Glyma.08G234700 Glycine max HOM05D007061 ORTHO05D009017 1.2e-115 420.6 295 71.5
Actinidia24658 Actinidia chinensis HOM05D007061 ORTHO05D009017 2.0e-115 419.9 291 71.1
AL1G64530 Arabidopsis lyrata HOM05D007061 ORTHO05D009017 2.0e-115 419.9 289 72.0
Ca_23083_v3 Cicer arietinum L. HOM05D007061 ORTHO05D009017 2.0e-115 419.9 291 71.5
Psat4g170560 Pisum sativum HOM05D007061 ORTHO05D009017 5.7e-115 418.3 284 73.2
CARHR045980 Cardamine hirsuta HOM05D007061 ORTHO05D009017 7.5e-115 417.9 289 71.6
FAN25G0842 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.8e-114 416.0 291 71.8
Lalb_Chr03g0031881 Lupinus albus HOM05D007061 ORTHO05D009017 4.8e-114 415.2 293 71.7
Prupe.4G128300 Prunus persica HOM05D007061 ORTHO05D009017 4.8e-114 415.2 257 77.8
FAN16G1770 Fragaria x ananassa HOM05D007061 ORTHO05D009017 2.4e-113 412.9 295 71.5
CSS0041382 Camellia sinensis var. sinensis HOM05D007061 ORTHO05D009017 2.0e-112 409.8 264 76.9
ECA240G0752 Erigeron canadensis HOM05D007061 ORTHO05D009017 7.7e-112 407.9 288 72.2
Aa31LG10G30 Aethionema arabicum HOM05D007061 ORTHO05D009017 2.2e-111 406.4 290 70.3
PSO675G3863 Papaver somniferum HOM05D007061 ORTHO05D009017 2.9e-111 406.0 270 74.1
SalBow8G1458 Salvia bowleyana HOM05D007061 ORTHO05D009017 2.9e-111 406.0 285 70.2
PSO675G0660 Papaver somniferum HOM05D007061 ORTHO05D009017 1.1e-110 404.1 281 72.2
Cc05_g16540 Coffea canephora HOM05D007061 ORTHO05D009017 3.2e-110 402.5 277 72.9
Sp1g41850 Schrenkiella parvula HOM05D007061 ORTHO05D009017 4.2e-110 402.1 287 71.1
vmacro11681 Vaccinium macrocarpon HOM05D007061 ORTHO05D009017 5.5e-110 401.7 258 76.0
Lsat_1_v5_gn_7_70001 Lactuca sativa HOM05D007061 ORTHO05D009017 9.4e-110 401.0 270 74.4
Thhalv10011478m.g Eutrema salsugineum HOM05D007061 ORTHO05D009017 1.2e-109 400.6 289 68.9
SalBow8G1251 Salvia bowleyana HOM05D007061 ORTHO05D009017 1.6e-109 400.2 285 69.5
Nitab4.5_0000029g0190 Nicotiana tabacum HOM05D007061 ORTHO05D009017 4.7e-109 398.7 288 68.8
SGA_v2.0_scaffold186G40180 Striga asiatica HOM05D007061 ORTHO05D009017 4.7e-109 398.7 278 71.2
Peaxi162Scf00452g00232 Petunia axillaris HOM05D007061 ORTHO05D009017 1.8e-108 396.7 276 69.9
AUR62037650 Chenopodium quinoa HOM05D007061 ORTHO05D009017 5.2e-108 395.2 258 75.6
HanXRQChr03g0080291 Helianthus annuus HOM05D007061 ORTHO05D009017 2.2e-106 389.8 288 68.8
Sc03g0005020 Simmondsia chinensis HOM05D007061 ORTHO05D009017 2.8e-106 389.4 300 66.0
A05p26620 Brassica napus HOM05D007061 ORTHO05D009017 6.3e-106 388.3 282 69.1
BraA05t21537Z Brassica rapa HOM05D007061 ORTHO05D009017 6.3e-106 388.3 282 69.1
Lj2A10G39 Lonicera japonica HOM05D007061 ORTHO05D009017 1.4e-105 387.1 307 64.5
GSVIVG01036723001 Vitis vinifera HOM05D007061 ORTHO05D009017 1.4e-105 387.1 238 78.6
unitig_37.g12195 Utricularia gibba HOM05D007061 ORTHO05D009017 3.1e-105 386.0 283 66.4
BcaB02g10820 Brassica carinata HOM05D007061 ORTHO05D009017 9.1e-105 384.4 283 68.2
C05p41210 Brassica napus HOM05D007061 ORTHO05D009017 9.1e-105 384.4 294 67.3
Zm00001eb233280 Zea mays HOM05D007061 ORTHO05D009017 1.2e-104 384.0 274 68.2
Phvul.011G179100 Phaseolus vulgaris HOM05D007061 ORTHO05D009017 1.0e-103 380.9 238 76.9
CAN.G943.59 Capsicum annuum HOM05D007061 ORTHO05D009017 1.3e-103 380.6 286 67.5
Carub.0001s4486 Capsella rubella HOM05D007061 ORTHO05D009017 2.9e-103 379.4 238 74.8
ATR0763G190 Amborella trichopoda HOM05D007061 ORTHO05D009017 1.6e-101 373.6 297 66.3
DCAR_009658 Daucus carota HOM05D007061 ORTHO05D009017 8.9e-100 367.9 238 74.8
BolC5t32863H Brassica oleracea HOM05D007061 ORTHO05D009017 1.8e-97 360.1 276 67.0
CDE01G0579 Ceratophyllum demersum HOM05D007061 ORTHO05D009017 1.6e-96 357.1 290 63.8
Gohir.A07G044000 Gossypium hirsutum HOM05D007061 ORTHO05D009017 1.3e-90 337.4 298 60.7
arahy.Tifrunner.gnm1.ann1.RLLR5G Arachis hypogaea HOM05D007061 ORTHO05D009017 2.4e-89 333.2 502 41.4
Nitab4.5_0002862g0050 Nicotiana tabacum HOM05D007061 ORTHO05D009017 1.3e-87 327.4 319 56.7
Pp3c22_13410 Physcomitrium patens HOM05D007061 ORTHO05D009017 5.0e-87 325.5 258 59.7
Cpa.g.sc32.92 Carica papaya HOM05D007061 ORTHO05D009017 4.3e-86 322.4 197 78.7
Os02g0173700 Oryza sativa ssp. japonica HOM05D007061 ORTHO05D009017 4.7e-85 318.9 218 69.3
AT1G54310 Arabidopsis thaliana HOM05D007061 ORTHO05D009017 2.6e-83 313.2 227 69.2
AagrBONN_evm.TU.Sc2ySwM_228.3482 Anthoceros agrestis HOM05D007061 ORTHO05D009017 7.5e-83 311.6 258 58.5
COL.COLO4_24973 Corchorus olitorius HOM05D007061 ORTHO05D009017 2.2e-82 310.1 296 58.4
Mapoly0013s0085 Marchantia polymorpha HOM05D007061 ORTHO05D009017 2.2e-82 310.1 281 57.7
BcaC05g28094 Brassica carinata HOM05D007061 ORTHO05D009017 1.2e-80 304.3 303 56.4
SMO145G0248 Selaginella moellendorffii HOM05D007061 ORTHO05D009017 1.0e-79 301.2 272 56.2
Migut.M01505 Erythranthe guttata HOM05D007061 ORTHO05D009017 1.7e-79 300.4 254 61.8
Haze_07765 Corylus avellana HOM05D007061 ORTHO05D009017 2.1e-77 293.5 176 81.2
arahy.Tifrunner.gnm1.ann1.R5CYRF Arachis hypogaea HOM05D007061 ORTHO05D009017 7.6e-75 285.0 229 65.9
Cre16.g649400 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.4e-60 236.9 297 43.8
PRCOL_00003223 Prasinoderma coloniale HOM05D007061 ORTHO05D009017 4.6e-56 222.6 294 40.5
Actinidia26210 Actinidia chinensis HOM05D007061 ORTHO05D009017 4.3e-54 216.1 155 71.6
Rhsim06G0244000 Rhododendron simsii HOM05D007061 ORTHO05D009017 6.4e-50 202.2 123 79.7
SEGI_33801 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.3e-45 188.0 149 62.4
Rhsim06G0244100 Rhododendron simsii HOM05D007061 ORTHO05D009017 6.2e-45 185.7 166 56.0
MCO09G574 Micromonas commoda HOM05D007061 ORTHO05D009017 1.4e-44 184.5 304 38.2
SEGI_31810 Sequoiadendron giganteum HOM05D007061 ORTHO05D009017 1.7e-42 177.6 138 61.6
Hma1.2p1_0151F.1_g067050 Hydrangea macrophylla HOM05D007061 ORTHO05D009017 2.9e-42 176.8 101 84.2
SGA_v2.0_scaffold112G31643 Striga asiatica HOM05D007061 ORTHO05D009017 3.8e-34 149.8 103 77.7
SGA_v2.0_scaffold60G20904 Striga asiatica HOM05D007061 ORTHO05D009017 3.8e-34 149.8 103 77.7
HPP92_028076 Vanilla planifolia HOM05D007061 ORTHO05D009017 3.2e-33 146.7 104 76.0
RcHm_v2.0_Chr1g0324361 Rosa chinensis HOM05D007061 ORTHO05D009017 4.8e-29 132.9 75 84.0
Cre09.g407900 Chlamydomonas reinhardtii HOM05D007061 ORTHO05D009017 2.1e-24 117.5 260 31.5
AUR62041050 Chenopodium quinoa HOM05D007061 ORTHO05D009017 7.7e-19 99.0 62 72.6
MD05G1238000 Malus domestica HOM05D007061 ORTHO05D009017 1.0e-18 98.6 63 74.6
Lsat_1_v5_gn_3_11400 Lactuca sativa HOM05D003461 ORTHO05D004386 8.0e-08 62.4 78 44.9


User provided reference genes

Program Settings