Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000993 Sechium edule HOM05D006266 ORTHO05D008016 0.0e+00 1325.8 644 100.0
ClCG05G007190 Citrullus lanatus HOM05D006266 ORTHO05D008016 0.0e+00 1147.9 701 81.9
CsaV3_3G015950 Cucumis sativus L. HOM05D006266 ORTHO05D008016 5.3e-308 1060.4 632 82.9
Prupe.1G197500 Prunus persica HOM05D006266 ORTHO05D008016 1.2e-288 996.1 661 73.7
Potri.017G027500 Populus trichocarpa HOM05D006266 ORTHO05D008016 6.8e-287 990.3 571 80.9
Manes.11G123500 Manihot esculenta HOM05D006266 ORTHO05D008016 2.0e-286 988.8 643 74.2
Sabra17G0016500 Salix brachista HOM05D006266 ORTHO05D008016 4.4e-286 987.6 573 80.1
CANSAT78G1968 Cannabis sativa HOM05D006266 ORTHO05D008016 6.3e-285 983.8 664 73.6
QL10p050722 Quercus lobata HOM05D006266 ORTHO05D008016 9.1e-284 979.9 673 72.2
Gohir.A10G139200 Gossypium hirsutum HOM05D006266 ORTHO05D008016 1.2e-283 979.5 581 79.9
Thecc.04G175700 Theobroma cacao HOM05D006266 ORTHO05D008016 7.7e-283 976.9 556 82.0
Gorai.011G140700 Gossypium raimondii HOM05D006266 ORTHO05D008016 1.3e-282 976.1 650 74.3
Duzib151G0889 Durio zibethinus HOM05D006266 ORTHO05D008016 2.9e-282 974.9 613 76.7
Gohir.D10G127600 Gossypium hirsutum HOM05D006266 ORTHO05D008016 8.6e-282 973.4 650 74.0
Atru.chr4.1256 Acer truncatum HOM05D006266 ORTHO05D008016 1.6e-280 969.1 548 82.1
Lj3g0007796 Lotus japonicus HOM05D006266 ORTHO05D008016 1.6e-280 969.1 599 76.5
TAR362G0699 Trochodendron aralioides HOM05D006266 ORTHO05D008016 1.6e-280 969.1 548 82.1
FvH4_4g10960 Fragaria vesca HOM05D006266 ORTHO05D008016 6.1e-280 967.2 554 80.7
TPR.G18865 Trifolium pratense HOM05D006266 ORTHO05D008016 1.0e-279 966.5 549 81.1
Lalb_Chr14g0372511 Lupinus albus HOM05D006266 ORTHO05D008016 1.4e-279 966.1 551 81.9
Cfa015189 Carpinus fangiana HOM05D006266 ORTHO05D008016 4.0e-279 964.5 548 83.0
Ciclev10019615m.g Citrus clementina HOM05D006266 ORTHO05D008016 5.2e-279 964.1 540 83.0
Ca_01251_v3 Cicer arietinum L. HOM05D006266 ORTHO05D008016 8.9e-279 963.4 549 80.9
Sc19g0002870 Simmondsia chinensis HOM05D006266 ORTHO05D008016 2.0e-278 962.2 646 73.2
Nn7g37595 Nelumbo nucifera HOM05D006266 ORTHO05D008016 5.7e-278 960.7 646 73.4
Psat5g289640 Pisum sativum HOM05D006266 ORTHO05D008016 9.8e-278 959.9 549 79.8
Glyma.15G029200 Glycine max HOM05D006266 ORTHO05D008016 8.3e-277 956.8 645 73.3
CiPaw.02G052400 Carya illinoinensis HOM05D006266 ORTHO05D008016 1.1e-276 956.4 537 83.1
PSO675G5931 Papaver somniferum HOM05D006266 ORTHO05D008016 1.8e-276 955.7 543 82.0
RcHm_v2.0_Chr4g0406421 Rosa chinensis HOM05D006266 ORTHO05D008016 3.1e-276 954.9 600 75.3
Dinv44175 Davidia involucrata HOM05D006266 ORTHO05D008016 5.4e-276 954.1 585 76.8
GSVIVG01010835001 Vitis vinifera HOM05D006266 ORTHO05D008016 5.4e-276 954.1 537 81.9
Phvul.005G153800 Phaseolus vulgaris HOM05D006266 ORTHO05D008016 1.6e-275 952.6 551 80.0
Thhalv10001353m.g Eutrema salsugineum HOM05D006266 ORTHO05D008016 2.7e-275 951.8 561 79.0
Aa31LG1G25150 Aethionema arabicum HOM05D006266 ORTHO05D008016 4.5e-275 951.0 643 71.1
VMungo1080G0961 Vigna mungo HOM05D006266 ORTHO05D008016 5.0e-274 947.6 572 77.6
THA.LOC104805138 Tarenaya hassleriana HOM05D006266 ORTHO05D008016 6.6e-274 947.2 569 77.2
AL4G42140 Arabidopsis lyrata HOM05D006266 ORTHO05D008016 1.9e-273 945.7 641 70.8
AT2G43400 Arabidopsis thaliana HOM05D006266 ORTHO05D008016 1.6e-272 942.6 635 71.7
Sp4g25480 Schrenkiella parvula HOM05D006266 ORTHO05D008016 3.6e-272 941.4 549 79.2
A05p03740 Brassica napus HOM05D006266 ORTHO05D008016 6.1e-272 940.6 548 79.2
Carub.0004s2587 Capsella rubella HOM05D006266 ORTHO05D008016 1.8e-271 939.1 551 78.9
Eucgr.H00345 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.2e-270 936.4 537 80.1
BcaC02g12401 Brassica carinata HOM05D006266 ORTHO05D008016 1.5e-270 936.0 657 69.9
BraA05t19361Z Brassica rapa HOM05D006266 ORTHO05D008016 2.6e-270 935.3 635 71.7
PGR142G3304 Punica granatum HOM05D006266 ORTHO05D008016 4.4e-270 934.5 607 74.5
C04p04440 Brassica napus HOM05D006266 ORTHO05D008016 5.7e-270 934.1 548 78.5
BolC4t22077H Brassica oleracea HOM05D006266 ORTHO05D008016 5.7e-270 934.1 548 78.5
MBI07_g02893_MAGBIO Magnolia biondii HOM05D006266 ORTHO05D008016 5.7e-270 934.1 549 80.0
Solyc12g021170.2 Solanum lycopersicum HOM05D006266 ORTHO05D008016 5.7e-270 934.1 591 73.9
CARHR138470 Cardamine hirsuta HOM05D006266 ORTHO05D008016 7.5e-270 933.7 631 71.3
Aqoxy2G04160 Aquilegia oxysepala HOM05D006266 ORTHO05D008016 4.9e-269 931.0 540 79.8
arahy.Tifrunner.gnm1.ann1.JU07H9 Arachis hypogaea HOM05D006266 ORTHO05D008016 1.8e-268 929.1 550 78.9
arahy.Tifrunner.gnm1.ann1.D6UD48 Arachis hypogaea HOM05D006266 ORTHO05D008016 3.2e-268 928.3 550 78.9
Hund12414 Selenicereus undatus HOM05D006266 ORTHO05D008016 5.4e-268 927.5 686 68.4
Sopen12g011050 Solanum pennellii HOM05D006266 ORTHO05D008016 1.2e-267 926.4 537 79.7
FAN17G0658 Fragaria x ananassa HOM05D006266 ORTHO05D008016 2.0e-267 925.6 554 78.0
ATR0743G015 Amborella trichopoda HOM05D006266 ORTHO05D008016 7.8e-267 923.7 546 78.0
HanXRQChr01g0023481 Helianthus annuus HOM05D006266 ORTHO05D008016 2.3e-266 922.2 644 70.7
Migut.G01347 Erythranthe guttata HOM05D006266 ORTHO05D008016 5.0e-266 921.0 630 71.0
vmacro00635 Vaccinium macrocarpon HOM05D006266 ORTHO05D008016 9.5e-265 916.8 689 66.0
Nitab4.5_0001990g0030 Nicotiana tabacum HOM05D006266 ORTHO05D008016 4.7e-264 914.4 561 75.6
MD04G1042900 Malus domestica HOM05D006266 ORTHO05D008016 4.0e-263 911.4 644 70.7
Lsat_1_v5_gn_1_77821 Lactuca sativa HOM05D006266 ORTHO05D008016 5.2e-263 911.0 586 72.5
SGA_v2.0_scaffold17G08154 Striga asiatica HOM05D006266 ORTHO05D008016 8.9e-263 910.2 605 71.6
CDE09G1029 Ceratophyllum demersum HOM05D006266 ORTHO05D008016 2.6e-262 908.7 558 76.5
Nitab4.5_0000505g0020 Nicotiana tabacum HOM05D006266 ORTHO05D008016 9.8e-262 906.7 557 75.0
Oeu024477.1 Olea europaea HOM05D006266 ORTHO05D008016 4.1e-260 901.4 599 71.5
MSTRG.4284 Avicennia marina HOM05D006266 ORTHO05D008016 7.8e-259 897.1 643 67.5
Actinidia27081 Actinidia chinensis HOM05D006266 ORTHO05D008016 1.7e-258 896.0 607 71.8
HPP92_022167 Vanilla planifolia HOM05D006266 ORTHO05D008016 1.6e-256 889.4 540 75.4
CAN.G51.9 Capsicum annuum HOM05D006266 ORTHO05D008016 2.4e-252 875.5 548 74.1
ECA248G0977 Erigeron canadensis HOM05D006266 ORTHO05D008016 6.0e-251 870.9 514 77.6
Medtr2g099040 Medicago truncatula HOM05D006266 ORTHO05D008016 1.9e-249 865.9 499 79.8
Cpa.g.sc9.312 Carica papaya HOM05D006266 ORTHO05D008016 3.1e-247 858.6 630 68.3
PSO017G5469 Papaver somniferum HOM05D006266 ORTHO05D008016 3.1e-247 858.6 543 75.0
DCAR_028531 Daucus carota HOM05D006266 ORTHO05D008016 6.8e-247 857.4 563 72.1
Haze_01464 Corylus avellana HOM05D006266 ORTHO05D008016 1.4e-244 849.7 834 56.2
Rhsim09G0023000 Rhododendron simsii HOM05D006266 ORTHO05D008016 2.1e-243 845.9 869 53.2
Peaxi162Scf00184g00418 Petunia axillaris HOM05D006266 ORTHO05D008016 1.3e-242 843.2 641 65.7
Pp3c26_13090 Physcomitrium patens HOM05D006266 ORTHO05D008016 9.0e-239 830.5 546 70.3
Hma1.2p1_0324F.1_g125550 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.2e-238 830.1 467 80.9
SMO141G0282 Selaginella moellendorffii HOM05D006266 ORTHO05D008016 9.9e-238 827.0 540 70.9
Dinv44151 Davidia involucrata HOM05D006266 ORTHO05D008016 3.9e-234 815.1 478 79.1
Lj3C32G4 Lonicera japonica HOM05D006266 ORTHO05D008016 1.8e-231 806.2 644 64.0
Lj3C1G0 Lonicera japonica HOM05D006266 ORTHO05D008016 6.9e-231 804.3 646 63.9
AUR62023848 Chenopodium quinoa HOM05D006266 ORTHO05D008016 1.3e-224 783.5 555 67.9
Hma1.2p1_0324F.1_g125560 Hydrangea macrophylla HOM05D006266 ORTHO05D008016 1.3e-221 773.5 432 81.0
AagrBONN_evm.TU.Sc2ySwM_117.3933 Anthoceros agrestis HOM05D006266 ORTHO05D008016 2.4e-215 752.7 495 70.9
MELO3C006793.2 Cucumis melo HOM05D006266 ORTHO05D008016 4.9e-213 745.0 449 81.1
Cre02.g094300 Chlamydomonas reinhardtii HOM05D006266 ORTHO05D008016 3.6e-187 659.1 550 56.9
Mapoly0012s0124 Marchantia polymorpha HOM05D006266 ORTHO05D008016 2.0e-182 643.3 441 68.0
Cc03_g11970 Coffea canephora HOM05D006266 ORTHO05D008016 3.5e-182 642.5 369 79.7
PRCOL_00003135 Prasinoderma coloniale HOM05D006266 ORTHO05D008016 9.8e-169 597.8 586 52.6
AUR62002342 Chenopodium quinoa HOM05D006266 ORTHO05D008016 5.4e-167 592.0 439 64.9
Cfa026422 Carpinus fangiana HOM05D006266 ORTHO05D008016 3.0e-162 576.2 539 54.4
Haze_26227 Corylus avellana HOM05D006266 ORTHO05D008016 3.1e-159 566.2 561 49.7
Haze_26951 Corylus avellana HOM05D006266 ORTHO05D008016 1.3e-157 560.8 559 50.1
Zm00001eb043590 Zea mays HOM05D006266 ORTHO05D008016 1.6e-150 537.3 358 70.7
Ah.07g202330 Amaranthus hybridus HOM05D006266 ORTHO05D008016 2.4e-135 486.9 386 65.0
unitig_52.g17681 Utricularia gibba HOM05D006266 ORTHO05D008016 4.4e-121 439.5 508 49.0
SEGI_14637 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.0e-114 415.2 266 74.4
Ah.07g202340 Amaranthus hybridus HOM05D006266 ORTHO05D008016 1.2e-97 361.7 201 80.6
Eucgr.L02537 Eucalyptus grandis HOM05D006266 ORTHO05D008016 1.9e-95 354.4 202 78.7
FAN12G3251 Fragaria x ananassa HOM05D006266 ORTHO05D008016 1.3e-83 315.1 186 79.6
EL10Ac3g06005 Beta vulgaris HOM05D006266 ORTHO05D008016 9.4e-79 298.9 263 60.1
PGSC0003DMG400014944 Solanum tuberosum HOM05D006266 ORTHO05D008016 4.4e-76 290.0 172 75.6
Cc03_g11980 Coffea canephora HOM05D006266 ORTHO05D008016 1.1e-74 285.4 174 77.0
Sopen02g004370 Solanum pennellii HOM05D006266 ORTHO05D008016 7.7e-73 279.3 170 77.6
SEGI_11902 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 6.1e-54 216.5 150 69.3
MELO3C006791.2 Cucumis melo HOM05D005231 ORTHO05D006387 1.3e-51 208.8 194 61.3
CSS0026769 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.2e-46 192.2 119 74.8
Os10g0516300 Oryza sativa ssp. japonica HOM05D006266 ORTHO05D008016 1.2e-46 192.2 116 74.1
CSS0016449 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.5e-44 183.0 106 82.1
CSS0001057 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.5e-36 156.4 127 65.4
CSS0026763 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 4.1e-34 150.6 127 63.0
SEGI_08796 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 9.5e-31 139.4 82 73.2
SEGI_29623 Sequoiadendron giganteum HOM05D006266 ORTHO05D008016 5.2e-29 133.7 82 79.3
CSS0001558 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.9e-26 125.2 112 60.7
CSS0004821 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.9e-26 125.2 112 60.7
CSS0016187 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.7e-19 102.1 78 67.9
arahy.Tifrunner.gnm1.ann1.QA6FBH Arachis hypogaea HOM05D006266 ORTHO05D008016 4.3e-15 87.4 57 73.7
CSS0026903 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 7.6e-12 76.6 59 62.7
Lsat_1_v5_gn_7_84681 Lactuca sativa HOM05D006266 ORTHO05D004407 1.7e-11 75.5 51 66.7
CSS0019028 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 6.4e-11 73.6 41 82.9
CSS0008442 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.1e-10 70.1 40 80.0
CSS0022444 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D024694 7.1e-10 70.1 40 80.0
CSS0006121 Camellia sinensis var. sinensis HOM05D006266 ORTHO05D008016 1.1e-07 62.8 34 82.4
AUR62006021 Chenopodium quinoa HOM05D001494 ORTHO05D001364 2.5e-07 61.6 42 64.3
Sp4g25500 Schrenkiella parvula HOM05D000001 ORTHO05D000003 6.2e-06 57.0 82 41.5


User provided reference genes

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