Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000986 Sechium edule HOM05D006388 ORTHO05D008026 3.4e-256 887.9 458 100.0
ClCG10G003610 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.5e-219 765.4 458 83.4
CsaV3_3G003610 Cucumis sativus L. HOM05D006388 ORTHO05D008026 1.2e-208 729.9 459 80.6
MELO3C014032.2 Cucumis melo HOM05D006388 ORTHO05D008026 6.4e-207 724.2 459 81.0
ClCG00G000350 Citrullus lanatus HOM05D006388 ORTHO05D008026 2.4e-198 695.7 477 74.6
ClCG00G006010 Citrullus lanatus HOM05D006388 ORTHO05D008026 4.2e-150 535.4 333 79.6
Cfa017806 Carpinus fangiana HOM05D006388 ORTHO05D008026 6.8e-148 528.1 471 60.1
Dinv03508 Davidia involucrata HOM05D006388 ORTHO05D008026 2.5e-142 509.6 473 57.7
Atru.chr6.990 Acer truncatum HOM05D006388 ORTHO05D008026 2.8e-141 506.1 456 59.4
CiPaw.15G107500 Carya illinoinensis HOM05D006388 ORTHO05D008026 4.7e-141 505.4 466 57.5
Potri.004G067200 Populus trichocarpa HOM05D006388 ORTHO05D008026 9.8e-139 497.7 482 55.6
Glyma.16G210900 Glycine max HOM05D006388 ORTHO05D008026 6.3e-138 495.0 507 54.8
Psat1g118840 Pisum sativum HOM05D006388 ORTHO05D008026 2.9e-135 486.1 502 52.0
Lalb_Chr03g0034281 Lupinus albus HOM05D006388 ORTHO05D008026 3.8e-135 485.7 503 53.5
Lj2g0005711 Lotus japonicus HOM05D006388 ORTHO05D008026 5.0e-135 485.3 502 54.4
Haze_18407 Corylus avellana HOM05D006388 ORTHO05D008026 6.6e-135 485.0 464 57.1
Phvul.004G137100 Phaseolus vulgaris HOM05D006388 ORTHO05D008026 6.6e-135 485.0 477 56.6
Prupe.5G245000 Prunus persica HOM05D006388 ORTHO05D008026 6.6e-135 485.0 492 55.7
arahy.Tifrunner.gnm1.ann1.V0741V Arachis hypogaea HOM05D006388 ORTHO05D008026 1.1e-134 484.2 501 54.5
RcHm_v2.0_Chr7g0176951 Rosa chinensis HOM05D006388 ORTHO05D008026 1.5e-134 483.8 463 57.9
TPR.G31361 Trifolium pratense HOM05D006388 ORTHO05D008026 9.5e-134 481.1 502 52.0
Sabra04G0045000 Salix brachista HOM05D006388 ORTHO05D008026 1.2e-133 480.7 510 51.8
arahy.Tifrunner.gnm1.ann1.586MWM Arachis hypogaea HOM05D006388 ORTHO05D008026 2.8e-133 479.6 501 54.1
Medtr6g068920 Medicago truncatula HOM05D006388 ORTHO05D008026 6.1e-133 478.4 507 52.7
VMungo0464G0944 Vigna mungo HOM05D006388 ORTHO05D008026 6.1e-133 478.4 509 53.4
FvH4_5g18560 Fragaria vesca HOM05D006388 ORTHO05D008026 4.9e-130 468.8 459 56.4
FAN18G2055 Fragaria x ananassa HOM05D006388 ORTHO05D008026 4.9e-130 468.8 459 56.4
MD14G1246700 Malus domestica HOM05D006388 ORTHO05D008026 1.1e-129 467.6 491 55.0
FAN13G2679 Fragaria x ananassa HOM05D006388 ORTHO05D008026 3.2e-129 466.1 459 55.6
FAN08G3112 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.2e-128 464.2 463 56.2
TAR622G0711 Trochodendron aralioides HOM05D006388 ORTHO05D008026 5.9e-128 461.8 463 54.2
Thecc.05G197200 Theobroma cacao HOM05D006388 ORTHO05D008026 3.0e-127 459.5 469 53.3
TWI15G1133 Tripterygium wilfordii HOM05D006388 ORTHO05D008026 3.0e-127 459.5 466 53.6
CANSAT80G2370 Cannabis sativa HOM05D006388 ORTHO05D008026 6.6e-127 458.4 466 54.5
COL.COLO4_30052 Corchorus olitorius HOM05D006388 ORTHO05D008026 8.6e-127 458.0 472 51.7
Ca_25279_v3 Cicer arietinum L. HOM05D006388 ORTHO05D008026 2.5e-126 456.4 490 52.2
Gohir.D08G245800 Gossypium hirsutum HOM05D006388 ORTHO05D008026 5.6e-126 455.3 470 53.8
Lj5A168G91 Lonicera japonica HOM05D006388 ORTHO05D008026 7.3e-126 454.9 505 51.3
Duzib128G0602 Durio zibethinus HOM05D006388 ORTHO05D008026 1.6e-125 453.8 469 52.5
Manes.02G226400 Manihot esculenta HOM05D006388 ORTHO05D008026 8.9e-124 448.0 463 53.3
Gorai.004G262300 Gossypium raimondii HOM05D006388 ORTHO05D008026 1.2e-123 447.6 470 53.0
Sopen03g029690 Solanum pennellii HOM05D006388 ORTHO05D008026 1.2e-123 447.6 476 52.5
Gohir.A08G225400 Gossypium hirsutum HOM05D006388 ORTHO05D008026 3.4e-123 446.0 470 52.6
PSO063G3611 Papaver somniferum HOM05D006388 ORTHO05D008026 4.9e-122 442.2 464 51.1
Carub.0002s2012 Capsella rubella HOM05D006388 ORTHO05D008026 1.4e-121 440.7 459 52.1
AL2G33160 Arabidopsis lyrata HOM05D006388 ORTHO05D008026 1.2e-120 437.6 464 52.8
AT1G73380 Arabidopsis thaliana HOM05D006388 ORTHO05D008026 1.6e-120 437.2 465 52.5
PGSC0003DMG400015280 Solanum tuberosum HOM05D006388 ORTHO05D008026 1.6e-120 437.2 477 52.4
CARHR066430 Cardamine hirsuta HOM05D006388 ORTHO05D008026 1.3e-119 434.1 468 51.1
PGR044G0861 Punica granatum HOM05D006388 ORTHO05D008026 1.3e-119 434.1 467 51.0
Cc00_g12620 Coffea canephora HOM05D006388 ORTHO05D008026 1.7e-119 433.7 476 51.7
Nitab4.5_0007717g0060 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.9e-119 432.6 463 53.1
Nitab4.5_0001495g0050 Nicotiana tabacum HOM05D006388 ORTHO05D008026 3.3e-118 429.5 460 52.6
Aa31LG4G3650 Aethionema arabicum HOM05D006388 ORTHO05D008026 7.3e-118 428.3 462 51.3
CAN.G861.30 Capsicum annuum HOM05D006388 ORTHO05D008026 1.6e-117 427.2 467 50.7
Oeu063709.3 Olea europaea HOM05D006388 ORTHO05D008026 2.8e-117 426.4 459 52.9
DCAR_014753 Daucus carota HOM05D001996 ORTHO05D002072 3.6e-117 426.0 416 56.2
Thhalv10018586m.g Eutrema salsugineum HOM05D006388 ORTHO05D008026 4.7e-117 425.6 461 51.0
BraA02t06912Z Brassica rapa HOM05D006388 ORTHO05D008026 1.4e-116 424.1 461 49.5
Nn4g26682 Nelumbo nucifera HOM05D006388 ORTHO05D008026 3.1e-116 422.9 464 50.4
Eucgr.K02329 Eucalyptus grandis HOM05D006388 ORTHO05D008026 5.2e-116 422.2 473 50.7
Cpa.g.sc168.3 Carica papaya HOM05D006388 ORTHO05D008026 8.9e-116 421.4 464 51.9
MBI03_g13439_MAGBIO Magnolia biondii HOM05D006388 ORTHO05D008026 1.2e-115 421.0 464 51.5
BolC2t09150H Brassica oleracea HOM05D006388 ORTHO05D008026 4.4e-115 419.1 460 49.3
A02p18710 Brassica napus HOM05D006388 ORTHO05D008026 5.8e-115 418.7 462 49.1
ECA236G2607 Erigeron canadensis HOM05D006388 ORTHO05D008026 1.3e-114 417.5 475 49.9
Sp5g28310 Schrenkiella parvula HOM05D006388 ORTHO05D008026 1.7e-114 417.2 461 50.3
C02p31040 Brassica napus HOM05D006388 ORTHO05D008026 3.7e-114 416.0 462 48.9
THA.LOC104813931 Tarenaya hassleriana HOM05D006388 ORTHO05D008026 2.3e-111 406.8 461 49.9
SalBow5G5586 Salvia bowleyana HOM05D006388 ORTHO05D008026 1.2e-109 401.0 462 50.6
Lsat_1_v5_gn_8_64640 Lactuca sativa HOM05D006388 ORTHO05D008026 1.6e-109 400.6 467 48.0
Ah.14g085810 Amaranthus hybridus HOM05D006388 ORTHO05D008026 2.1e-109 400.2 468 47.6
HanXRQChr05g0141681 Helianthus annuus HOM05D006388 ORTHO05D008026 2.1e-109 400.2 464 47.6
EL10Ac8g19473 Beta vulgaris HOM05D006388 ORTHO05D008026 8.1e-109 398.3 471 47.8
Rhsim08G0125300 Rhododendron simsii HOM05D006388 ORTHO05D008026 8.1e-109 398.3 540 45.9
Sc10g0008630 Simmondsia chinensis HOM05D006388 ORTHO05D008026 5.8e-107 392.1 453 49.7
Aqoxy3G04328 Aquilegia oxysepala HOM05D006388 ORTHO05D008026 1.3e-106 391.0 466 48.5
CDE04G0152 Ceratophyllum demersum HOM05D006388 ORTHO05D008026 4.9e-106 389.0 477 45.1
TPR.G3132 Trifolium pratense HOM05D006388 ORTHO05D008026 1.1e-105 387.9 426 49.5
SGA_v2.0_scaffold25G10731 Striga asiatica HOM05D006388 ORTHO05D008026 1.6e-104 384.0 469 49.3
ATR0124G024 Amborella trichopoda HOM05D006388 ORTHO05D008026 5.1e-103 379.0 493 43.4
AUR62040788 Chenopodium quinoa HOM05D006388 ORTHO05D008026 9.6e-102 374.8 412 50.5
Solyc03g019930.4 Solanum lycopersicum HOM05D006388 ORTHO05D008026 1.9e-97 360.5 461 46.4
QL10p033727 Quercus lobata HOM05D006388 ORTHO05D008026 2.1e-96 357.1 400 53.0
HPP92_007318 Vanilla planifolia HOM05D006388 ORTHO05D008026 3.5e-96 356.3 457 46.2
Ciclev10020647m.g Citrus clementina HOM05D006388 ORTHO05D008026 1.3e-95 354.4 387 51.7
GSVIVG01024248001 Vitis vinifera HOM05D006388 ORTHO05D008026 1.3e-95 354.4 452 47.6
vmacro17751 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 9.3e-89 331.6 375 51.7
Actinidia34678 Actinidia chinensis HOM05D006388 ORTHO05D008026 3.3e-86 323.2 338 52.4
Migut.O00278 Erythranthe guttata HOM05D006388 ORTHO05D008026 5.3e-84 315.8 455 43.3
Hund22363 Selenicereus undatus HOM05D006388 ORTHO05D008026 9.9e-83 311.6 404 45.3
SEGI_28863 Sequoiadendron giganteum HOM05D006388 ORTHO05D008026 6.0e-80 302.4 489 37.6
unitig_749.g14324 Utricularia gibba HOM05D006388 ORTHO05D008026 4.8e-77 292.7 460 42.0
Zm00001eb068340 Zea mays HOM05D006388 ORTHO05D008026 1.9e-73 280.8 452 38.7
Peaxi162Scf00171g00011 Petunia axillaris HOM05D006388 ORTHO05D008026 2.5e-70 270.4 229 59.4
Glyma.09G161700 Glycine max HOM05D006388 ORTHO05D008026 7.4e-70 268.9 212 63.7
TPR.G27930 Trifolium pratense HOM05D006388 ORTHO05D008026 8.2e-69 265.4 215 62.3
Duzib128G0966 Durio zibethinus HOM05D006388 ORTHO05D008026 2.1e-64 250.8 210 61.0
Os10g0489800 Oryza sativa ssp. japonica HOM05D006388 ORTHO05D008026 5.3e-60 236.1 329 43.5
ClCG00G000360 Citrullus lanatus HOM05D006388 ORTHO05D008026 1.0e-55 221.9 124 91.1
Mapoly0114s0003 Marchantia polymorpha HOM05D006388 ORTHO05D008026 2.0e-54 217.6 475 31.6
Gohir.A08G079000 Gossypium hirsutum HOM05D006388 ORTHO05D008026 7.4e-54 215.7 287 43.9
Duzib128G1156 Durio zibethinus HOM05D006388 ORTHO05D008026 5.9e-51 206.1 227 50.7
SMO169G0166 Selaginella moellendorffii HOM05D006388 ORTHO05D008026 7.7e-51 205.7 424 33.7
CSS0002556 Camellia sinensis var. sinensis HOM05D006388 ORTHO05D008026 3.8e-50 203.4 124 79.8
AagrBONN_evm.TU.Sc2ySwM_344.3994 Anthoceros agrestis HOM05D006388 ORTHO05D008026 4.2e-49 199.9 539 31.0
FAN04G1542 Fragaria x ananassa HOM05D006388 ORTHO05D008026 1.4e-47 194.9 203 51.2
AUR62038569 Chenopodium quinoa HOM05D006388 ORTHO05D008026 3.1e-44 183.7 270 40.4
Pp3c1_7520 Physcomitrium patens HOM05D006388 ORTHO05D008026 2.2e-42 177.6 504 28.6
CBR_g36351 Chara braunii HOM05D006388 ORTHO05D008026 2.9e-34 150.6 177 43.5
TPR.G16379 Trifolium pratense HOM05D006388 ORTHO05D008026 4.1e-28 130.2 120 56.7
vmacro17752 Vaccinium macrocarpon HOM05D006388 ORTHO05D008026 1.8e-23 114.8 91 63.7
Glyma.09G161751 Glycine max HOM05D006388 ORTHO05D008026 3.0e-23 114.0 134 48.5
TPR.G31360 Trifolium pratense HOM05D006388 ORTHO05D008026 5.7e-22 109.8 72 75.0
TPR.G46 Trifolium pratense HOM05D006388 ORTHO05D008026 3.8e-18 97.1 94 52.1
PGR044G2638 Punica granatum HOM05D006388 ORTHO05D008026 8.9e-15 85.9 95 55.8
Actinidia34679 Actinidia chinensis HOM05D006388 ORTHO05D008026 2.4e-12 77.8 45 82.2
MapolyY_B0043 Marchantia polymorpha HOM05D006388 ORTHO05D008026 4.6e-11 73.6 154 33.8
Hma1.2p1_0800F.1_g220210 Hydrangea macrophylla HOM05D006388 ORTHO05D008026 2.3e-10 71.2 53 67.9
Cre02.g083400 Chlamydomonas reinhardtii HOM05D006388 ORTHO05D008026 1.2e-08 65.5 171 31.0
Zm00001eb050690 Zea mays HOM05D006388 ORTHO05D008026 3.6e-08 63.9 48 60.4


User provided reference genes

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