Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000917 Sechium edule HOM05D004378 ORTHO05D005269 2.1e-192 675.6 359 100.0
Sed0026402 Sechium edule HOM05D004378 ORTHO05D005269 4.2e-153 545.0 381 76.4
ClCG03G013210 Citrullus lanatus HOM05D004378 ORTHO05D005269 3.9e-151 538.5 380 76.1
MELO3C015197.2 Cucumis melo HOM05D004378 ORTHO05D005269 2.5e-150 535.8 380 75.5
CsaV3_1G042790 Cucumis sativus L. HOM05D004378 ORTHO05D005269 9.7e-150 533.9 380 75.3
CANSAT54G1532 Cannabis sativa HOM05D004378 ORTHO05D005269 5.2e-127 458.4 385 63.6
Manes.06G163800 Manihot esculenta HOM05D004378 ORTHO05D005269 2.6e-126 456.1 366 66.4
Atru.chr3.2709 Acer truncatum HOM05D004378 ORTHO05D005269 7.4e-126 454.5 378 65.1
Ciclev10015746m.g Citrus clementina HOM05D004378 ORTHO05D005269 7.4e-126 454.5 366 66.4
CiPaw.13G159900 Carya illinoinensis HOM05D004378 ORTHO05D005269 2.8e-125 452.6 371 65.5
Potri.009G052800 Populus trichocarpa HOM05D004378 ORTHO05D005269 3.7e-125 452.2 373 66.0
CSS0043718 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 6.3e-125 451.4 356 67.7
arahy.Tifrunner.gnm1.ann1.YL0VRD Arachis hypogaea HOM05D004378 ORTHO05D005269 8.2e-125 451.1 392 64.0
QL01p004640 Quercus lobata HOM05D004378 ORTHO05D005269 1.1e-124 450.7 384 63.8
Prupe.4G250000 Prunus persica HOM05D004378 ORTHO05D005269 1.4e-124 450.3 369 64.8
TWI34G1172 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.4e-124 450.3 373 66.0
arahy.Tifrunner.gnm1.ann1.B78H3K Arachis hypogaea HOM05D004378 ORTHO05D005269 5.3e-124 448.4 392 63.8
CiPaw.14G118500 Carya illinoinensis HOM05D004378 ORTHO05D005269 9.1e-124 447.6 381 63.5
Duzib168G0314 Durio zibethinus HOM05D004378 ORTHO05D005269 1.0e-122 444.1 362 63.3
TWI60G1037 Tripterygium wilfordii HOM05D004378 ORTHO05D005269 1.3e-122 443.7 377 64.5
Duzib150G1120 Durio zibethinus HOM05D004378 ORTHO05D005269 6.5e-122 441.4 354 65.3
MD11G1192300 Malus domestica HOM05D004378 ORTHO05D005269 6.5e-122 441.4 371 63.3
Nn2g15350 Nelumbo nucifera HOM05D004378 ORTHO05D005269 6.5e-122 441.4 380 62.6
Ca_14874_v3 Cicer arietinum L. HOM05D004378 ORTHO05D005269 1.5e-121 440.3 374 64.2
Gohir.A08G013900 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.9e-121 439.9 366 63.7
Gohir.D08G024400 Gossypium hirsutum HOM05D004378 ORTHO05D005269 1.9e-121 439.9 366 63.7
Gorai.004G019800 Gossypium raimondii HOM05D004378 ORTHO05D005269 1.9e-121 439.9 366 63.7
Potri.001G257500 Populus trichocarpa HOM05D004378 ORTHO05D005269 1.9e-121 439.9 387 63.3
Hma1.2p1_0368F.1_g137300 Hydrangea macrophylla HOM05D004378 ORTHO05D005269 7.2e-121 438.0 353 66.6
RcHm_v2.0_Chr5g0052271 Rosa chinensis HOM05D004378 ORTHO05D005269 7.2e-121 438.0 381 63.0
Thecc.09G234500 Theobroma cacao HOM05D004378 ORTHO05D005269 9.4e-121 437.6 366 64.2
Actinidia16337 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.6e-120 436.8 358 65.4
GSVIVG01025251001 Vitis vinifera HOM05D004378 ORTHO05D005269 1.6e-120 436.8 376 63.8
Medtr3g061490 Medicago truncatula HOM05D004378 ORTHO05D005269 6.1e-120 434.9 343 67.3
Actinidia06909 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.0e-119 434.1 353 65.4
FvH4_3g28770 Fragaria vesca HOM05D004378 ORTHO05D005269 1.4e-119 433.7 380 62.6
Lj6g0003660 Lotus japonicus HOM05D004378 ORTHO05D005269 5.2e-119 431.8 372 63.7
TPR.G14725 Trifolium pratense HOM05D004378 ORTHO05D005269 5.2e-119 431.8 342 66.7
Cfa009777 Carpinus fangiana HOM05D004378 ORTHO05D005269 6.7e-119 431.4 343 67.6
Sabra16G0157500 Salix brachista HOM05D004378 ORTHO05D005269 6.7e-119 431.4 387 62.3
Haze_23143 Corylus avellana HOM05D004378 ORTHO05D005269 1.2e-118 430.6 367 64.3
Glyma.08G336000 Glycine max HOM05D004378 ORTHO05D005269 4.4e-118 428.7 380 62.9
HanXRQChr13g0401501 Helianthus annuus HOM05D004378 ORTHO05D005269 7.5e-118 427.9 364 64.3
ECA233G1578 Erigeron canadensis HOM05D004378 ORTHO05D005269 9.7e-118 427.6 368 63.0
Lalb_Chr15g0082531 Lupinus albus HOM05D004378 ORTHO05D005269 1.3e-117 427.2 381 61.7
FAN16G3181 Fragaria x ananassa HOM05D004378 ORTHO05D005269 3.7e-117 425.6 394 60.2
Nn7g36225 Nelumbo nucifera HOM05D004378 ORTHO05D005269 6.3e-117 424.9 381 61.7
FAN25G2048 Fragaria x ananassa HOM05D004378 ORTHO05D005269 8.3e-117 424.5 400 59.8
FAN11G1994 Fragaria x ananassa HOM05D004378 ORTHO05D005269 1.4e-116 423.7 400 59.8
Phvul.006G062100 Phaseolus vulgaris HOM05D004378 ORTHO05D005269 1.8e-116 423.3 373 62.7
MSTRG.18430 Avicennia marina HOM05D004378 ORTHO05D005269 2.4e-116 422.9 332 66.9
Lalb_Chr18g0050451 Lupinus albus HOM05D004378 ORTHO05D005269 2.4e-116 422.9 328 68.0
VMungo0540G0714 Vigna mungo HOM05D004378 ORTHO05D005269 2.4e-116 422.9 375 62.4
TAR369G0513 Trochodendron aralioides HOM05D004378 ORTHO05D005269 5.3e-116 421.8 338 65.7
Glyma.18G071100 Glycine max HOM05D004378 ORTHO05D005269 7.0e-116 421.4 384 62.5
Dinv22174 Davidia involucrata HOM05D004378 ORTHO05D005269 9.1e-116 421.0 342 66.4
Rhsim13G0220800 Rhododendron simsii HOM05D004378 ORTHO05D005269 2.7e-115 419.5 343 67.1
COL.COLO4_07579 Corchorus olitorius HOM05D004378 ORTHO05D005269 4.5e-115 418.7 307 71.3
HanXRQChr02g0051301 Helianthus annuus HOM05D004378 ORTHO05D005269 1.0e-114 417.5 353 64.3
PGSC0003DMG400007339 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.7e-114 416.8 375 61.6
DCAR_030049 Daucus carota HOM05D004378 ORTHO05D005269 2.2e-114 416.4 366 62.6
Migut.D00605 Erythranthe guttata HOM05D004378 ORTHO05D005269 2.9e-114 416.0 324 67.6
Eucgr.J00761 Eucalyptus grandis HOM05D004378 ORTHO05D005269 2.9e-114 416.0 370 61.1
Sabra09G0038500 Salix brachista HOM05D004378 ORTHO05D005269 7.2e-113 411.4 481 52.4
Cc01_g04470 Coffea canephora HOM05D004378 ORTHO05D005269 1.2e-112 410.6 366 62.8
Nitab4.5_0000023g0700 Nicotiana tabacum HOM05D004378 ORTHO05D005269 1.2e-112 410.6 378 60.3
Psat5g163880 Pisum sativum HOM05D004378 ORTHO05D005269 3.6e-112 409.1 374 59.4
MBI04_g36075_MAGBIO Magnolia biondii HOM05D004378 ORTHO05D005269 4.0e-111 405.6 376 59.3
Nitab4.5_0002786g0020 Nicotiana tabacum HOM05D004378 ORTHO05D005269 8.8e-111 404.4 392 58.2
Aqoxy1G00284 Aquilegia oxysepala HOM05D004378 ORTHO05D005269 1.2e-110 404.1 380 57.9
Oeu001481.2 Olea europaea HOM05D004378 ORTHO05D005269 1.2e-110 404.1 346 63.0
CAN.G1204.2 Capsicum annuum HOM05D004378 ORTHO05D005269 1.5e-110 403.7 376 59.3
Migut.N02321 Erythranthe guttata HOM05D004378 ORTHO05D005269 1.5e-110 403.7 330 65.2
EL10Ac4g10244 Beta vulgaris HOM05D004378 ORTHO05D005269 2.0e-110 403.3 374 58.6
CDE05G0340 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.6e-110 402.9 367 60.8
Peaxi162Scf00004g02527 Petunia axillaris HOM05D004378 ORTHO05D005269 5.7e-110 401.7 361 62.0
Peaxi162Scf00032g00327 Petunia axillaris HOM05D004378 ORTHO05D005269 5.7e-110 401.7 380 59.7
PSO384G0525 Papaver somniferum HOM05D004378 ORTHO05D005269 2.2e-109 399.8 354 59.0
SGA_v2.0_scaffold247G44883 Striga asiatica HOM05D004378 ORTHO05D005269 4.8e-109 398.7 310 67.1
PSO339G6315 Papaver somniferum HOM05D004378 ORTHO05D005269 6.3e-109 398.3 355 59.2
CDE05G0884 Ceratophyllum demersum HOM05D004378 ORTHO05D005269 2.4e-108 396.4 367 60.2
CSS0001002 Camellia sinensis var. sinensis HOM05D004378 ORTHO05D005269 1.2e-107 394.0 335 65.4
Lsat_1_v5_gn_6_26200 Lactuca sativa HOM05D004378 ORTHO05D005269 1.6e-107 393.7 371 60.1
PGR119G1351 Punica granatum HOM05D004378 ORTHO05D005269 2.7e-107 392.9 344 62.8
THA.LOC104799106 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.5e-107 392.5 361 59.8
Sopen11g025430 Solanum pennellii HOM05D004378 ORTHO05D005269 1.0e-106 391.0 349 61.6
AUR62000126 Chenopodium quinoa HOM05D004378 ORTHO05D005269 6.6e-106 388.3 333 62.5
Oeu016680.1 Olea europaea HOM05D004378 ORTHO05D005269 8.6e-106 387.9 356 60.7
Dinv36255 Davidia involucrata HOM05D004378 ORTHO05D005269 1.1e-105 387.5 298 68.1
Lsat_1_v5_gn_2_31060 Lactuca sativa HOM05D004378 ORTHO05D005269 3.3e-105 386.0 316 64.9
THA.LOC104824616 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 3.3e-105 386.0 343 62.4
THA.LOC104816878 Tarenaya hassleriana HOM05D004378 ORTHO05D005269 4.2e-105 385.6 368 60.1
Aa31LG10G3540 Aethionema arabicum HOM05D004378 ORTHO05D005269 1.2e-104 384.0 326 63.5
PGSC0003DMG400010703 Solanum tuberosum HOM05D004378 ORTHO05D005269 1.2e-104 384.0 378 58.5
Solyc01g008470.3 Solanum lycopersicum HOM05D004378 ORTHO05D005269 3.6e-104 382.5 378 58.7
Ah.06g194140 Amaranthus hybridus HOM05D004378 ORTHO05D005269 4.7e-104 382.1 374 57.0
Sopen01g003990 Solanum pennellii HOM05D004378 ORTHO05D005269 1.0e-103 380.9 378 58.7
Lj2A629T47 Lonicera japonica HOM05D004378 ORTHO05D005269 1.8e-103 380.2 335 63.6
CARHR096800 Cardamine hirsuta HOM05D004378 ORTHO05D005269 2.6e-102 376.3 368 57.6
SGA_v2.0_scaffold8G04586 Striga asiatica HOM05D004378 ORTHO05D005269 4.4e-102 375.6 332 61.7
BraA05t21666Z Brassica rapa HOM05D004378 ORTHO05D005269 7.5e-102 374.8 364 58.8
unitig_699.g19136 Utricularia gibba HOM05D004378 ORTHO05D005269 9.8e-102 374.4 346 61.0
Sp3g18950 Schrenkiella parvula HOM05D004378 ORTHO05D005269 1.7e-101 373.6 346 60.7
A05p27790 Brassica napus HOM05D004378 ORTHO05D005269 2.2e-101 373.2 364 58.5
Nitab4.5_0002741g0140 Nicotiana tabacum HOM05D004378 ORTHO05D005269 2.8e-101 372.9 306 64.7
BcaB04g20618 Brassica carinata HOM05D004378 ORTHO05D005269 3.7e-101 372.5 365 57.0
C05p43130 Brassica napus HOM05D004378 ORTHO05D005269 1.1e-100 370.9 365 58.6
BolC5t33043H Brassica oleracea HOM05D004378 ORTHO05D005269 1.1e-100 370.9 365 58.6
BraA01t03495Z Brassica rapa HOM05D004378 ORTHO05D005269 1.1e-100 370.9 365 56.4
Hund22027 Selenicereus undatus HOM05D004378 ORTHO05D005269 1.1e-100 370.9 361 54.6
unitig_27.g24995 Utricularia gibba HOM05D004378 ORTHO05D005269 1.1e-100 370.9 356 58.1
A01p33870 Brassica napus HOM05D004378 ORTHO05D005269 1.4e-100 370.5 365 56.7
BcaB06g26169 Brassica carinata HOM05D004378 ORTHO05D005269 3.1e-100 369.4 365 57.3
Nitab4.5_0001587g0030 Nicotiana tabacum HOM05D004378 ORTHO05D005269 3.1e-100 369.4 353 58.4
Aa31LG8G7740 Aethionema arabicum HOM05D004378 ORTHO05D005269 5.4e-100 368.6 373 56.3
Manes.14G003200 Manihot esculenta HOM05D004378 ORTHO05D005269 5.4e-100 368.6 366 57.7
Carub.0003s2090 Capsella rubella HOM05D004378 ORTHO05D005269 3.5e-99 365.9 356 57.9
Thhalv10021027m.g Eutrema salsugineum HOM05D004378 ORTHO05D005269 7.8e-99 364.8 346 59.8
AT3G20920 Arabidopsis thaliana HOM05D004378 ORTHO05D005269 1.0e-98 364.4 346 59.2
ATR0332G071 Amborella trichopoda HOM05D004378 ORTHO05D005269 6.6e-98 361.7 376 56.6
Zm00001eb064100 Zea mays HOM05D004378 ORTHO05D005269 1.5e-97 360.5 294 60.9
Os02g0435000 Oryza sativa ssp. japonica HOM05D004378 ORTHO05D005269 1.4e-95 354.0 355 54.9
Zm00001eb210940 Zea mays HOM05D004378 ORTHO05D005269 4.0e-95 352.4 294 59.5
BcaB06g26167 Brassica carinata HOM05D004378 ORTHO05D005269 8.9e-95 351.3 340 58.2
A03p41980 Brassica napus HOM05D004378 ORTHO05D005269 8.9e-95 351.3 364 54.7
BraA03t13351Z Brassica rapa HOM05D004378 ORTHO05D005269 1.2e-94 350.9 364 54.7
BcaC01g03532 Brassica carinata HOM05D004378 ORTHO05D005269 2.6e-94 349.7 373 54.4
C03p51390 Brassica napus HOM05D004378 ORTHO05D005269 2.6e-94 349.7 373 54.4
HPP92_024875 Vanilla planifolia HOM05D004378 ORTHO05D005269 2.4e-92 343.2 341 53.7
BolC3t17425H Brassica oleracea HOM05D004378 ORTHO05D005269 5.4e-92 342.0 376 54.3
Actinidia06345 Actinidia chinensis HOM05D004378 ORTHO05D005269 1.9e-89 333.6 297 62.3
SEGI_31334 Sequoiadendron giganteum HOM05D004378 ORTHO05D005269 9.8e-86 321.2 339 51.3
BcaC05g28205 Brassica carinata HOM05D004378 ORTHO05D005269 6.4e-85 318.5 364 52.2
vmacro04153 Vaccinium macrocarpon HOM05D004378 ORTHO05D005269 6.6e-82 308.5 477 44.7
AL3G34880 Arabidopsis lyrata HOM05D004378 ORTHO05D005269 1.2e-80 304.3 294 59.2
SHI29790 Sapria himalayana HOM05D004378 ORTHO05D005269 5.8e-78 295.4 345 52.5
SMO117G0234 Selaginella moellendorffii HOM05D004378 ORTHO05D005269 2.1e-75 287.0 321 47.4
Lj1A330G22 Lonicera japonica HOM05D004378 ORTHO05D005269 6.6e-74 282.0 308 55.8
Mapoly0080s0045 Marchantia polymorpha HOM05D004378 ORTHO05D005269 1.8e-71 273.9 347 44.4
Cpa.g.sc84.48 Carica papaya HOM05D004378 ORTHO05D005269 1.5e-70 270.8 230 63.5
AagrBONN_evm.TU.Sc2ySwM_228.3794 Anthoceros agrestis HOM05D004378 ORTHO05D005269 7.6e-70 268.5 303 49.8
Sc09g0000750 Simmondsia chinensis HOM05D004378 ORTHO05D005269 1.7e-69 267.3 205 66.8
BolC1t04284H Brassica oleracea HOM05D004378 ORTHO05D005269 8.4e-69 265.0 273 54.6
Pp3c16_12820 Physcomitrium patens HOM05D004378 ORTHO05D005269 3.9e-66 256.1 309 48.9
CAN.G494.6 Capsicum annuum HOM05D004378 ORTHO05D005269 8.7e-66 255.0 234 59.0
MD03G1174500 Malus domestica HOM05D004378 ORTHO05D005269 1.9e-65 253.8 229 60.7
MSTRG.21374 Avicennia marina HOM05D004378 ORTHO05D005269 5.6e-65 252.3 202 67.8
FAN21G1987 Fragaria x ananassa HOM05D004378 ORTHO05D005269 4.8e-64 249.2 238 59.2
Pp3c27_5530 Physcomitrium patens HOM05D004378 ORTHO05D005269 1.4e-63 247.7 351 42.7
Lalb_Chr20g0115221 Lupinus albus HOM05D004378 ORTHO05D005269 7.6e-62 241.9 194 65.5
Peaxi162Scf00004g02528 Petunia axillaris HOM05D004378 ORTHO05D005269 3.4e-54 216.5 291 46.7
CBR_g54322 Chara braunii HOM05D004378 ORTHO05D005269 3.1e-47 193.4 298 39.3
TAR057G0002 Trochodendron aralioides HOM05D004378 ORTHO05D005269 4.0e-39 166.4 133 63.9
MSTRG.21373 Avicennia marina HOM05D004378 ORTHO05D005269 1.5e-38 164.5 113 71.7
TAR623G1006 Trochodendron aralioides HOM05D004378 ORTHO05D005269 2.5e-36 157.1 170 54.7
Lalb_Chr20g0115231 Lupinus albus HOM05D004378 ORTHO05D005269 4.2e-36 156.4 135 61.5
AUR62019307 Chenopodium quinoa HOM05D004378 ORTHO05D005269 5.0e-29 132.9 170 45.3
SHI32640 Sapria himalayana HOM05D004378 ORTHO05D000001 5.1e-26 122.9 104 62.5
Sopen01g004010 Solanum pennellii HOM05D004378 ORTHO05D005269 6.5e-21 105.9 118 53.4
Solyc03g096225.1 Solanum lycopersicum HOM05D004378 ORTHO05D005269 1.9e-12 77.8 97 42.3
Cre02.g084050 Chlamydomonas reinhardtii HOM05D004378 ORTHO05D005269 1.2e-11 75.1 281 22.1
MCO14G148 Micromonas commoda HOM05D004378 ORTHO05D005269 6.1e-11 72.8 258 25.6


User provided reference genes

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