Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000899 Sechium edule HOM05D007758 ORTHO05D009788 2.0e-22 108.2 55 100.0
ClCG09G012550 Citrullus lanatus HOM05D007758 ORTHO05D009788 2.9e-21 104.4 54 94.4
MELO3C003346.2 Cucumis melo HOM05D007758 ORTHO05D009788 2.1e-19 98.2 54 90.7
CsaV3_3G049700 Cucumis sativus L. HOM05D007758 ORTHO05D009788 1.0e-18 95.9 54 87.0
Hma1.2p1_1673F.1_g296900 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 3.9e-18 94.0 54 83.3
THA.LOC104814457 Tarenaya hassleriana HOM05D007758 ORTHO05D009788 3.9e-18 94.0 53 84.9
Manes.15G171100 Manihot esculenta HOM05D007758 ORTHO05D009788 1.9e-17 91.7 53 81.1
TAR633G2270 Trochodendron aralioides HOM05D007758 ORTHO05D009788 4.3e-17 90.5 54 79.6
PGR042G0139 Punica granatum HOM05D007758 ORTHO05D009788 5.7e-17 90.1 54 81.5
CSS0001994 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 7.4e-17 89.7 54 79.6
Cfa012357 Carpinus fangiana HOM05D007758 ORTHO05D009788 7.4e-17 89.7 54 81.5
CSS0049692 Camellia sinensis var. sinensis HOM05D007758 ORTHO05D009788 1.3e-16 89.0 53 81.1
Lsat_1_v5_gn_6_90760 Lactuca sativa HOM05D007758 ORTHO05D009788 1.3e-16 89.0 54 77.8
Thecc.03G237200 Theobroma cacao HOM05D007758 ORTHO05D009788 2.1e-16 88.2 54 77.8
TAR629G0116 Trochodendron aralioides HOM05D007758 ORTHO05D009788 2.1e-16 88.2 54 81.5
AL7G37620 Arabidopsis lyrata HOM05D007758 ORTHO05D009788 2.8e-16 87.8 53 77.4
Nn1g00706 Nelumbo nucifera HOM05D007758 ORTHO05D009788 3.7e-16 87.4 53 75.5
CiPaw.12G057000 Carya illinoinensis HOM05D007758 ORTHO05D009788 4.8e-16 87.0 54 75.9
AT4G17085 Arabidopsis thaliana HOM05D007758 ORTHO05D009788 6.2e-16 86.7 54 74.1
CARHR223670 Cardamine hirsuta HOM05D007758 ORTHO05D009788 8.2e-16 86.3 54 74.1
Carub.0007s2429 Capsella rubella HOM05D007758 ORTHO05D009788 1.4e-15 85.5 54 72.2
Hma1.2p1_0414F.1_g147490 Hydrangea macrophylla HOM05D007758 ORTHO05D009788 1.4e-15 85.5 51 78.4
CANSAT21G1691 Cannabis sativa HOM05D007758 ORTHO05D009788 1.8e-15 85.1 47 83.0
Glyma.05G067900 Glycine max HOM05D007758 ORTHO05D009788 1.8e-15 85.1 54 74.1
Migut.E00814 Erythranthe guttata HOM05D007758 ORTHO05D009788 3.1e-15 84.3 51 76.5
Oeu035101.1 Olea europaea HOM05D007758 ORTHO05D009788 3.1e-15 84.3 54 72.2
Phvul.003G226800 Phaseolus vulgaris HOM05D007758 ORTHO05D009788 3.1e-15 84.3 54 75.9
COL.COLO4_06700 Corchorus olitorius HOM05D007758 ORTHO05D009788 4.0e-15 84.0 51 78.4
BcaC07g38037 Brassica carinata HOM05D007758 ORTHO05D009788 6.9e-15 83.2 53 73.6
A08p12870 Brassica napus HOM05D007758 ORTHO05D009788 6.9e-15 83.2 53 73.6
BolC8t48433H Brassica oleracea HOM05D007758 ORTHO05D009788 6.9e-15 83.2 53 73.6
BraA08t33271Z Brassica rapa HOM05D007758 ORTHO05D009788 6.9e-15 83.2 53 73.6
FAN13G2273 Fragaria x ananassa HOM05D007758 ORTHO05D009788 9.0e-15 82.8 52 75.0
FAN18G3236 Fragaria x ananassa HOM05D007758 ORTHO05D009788 9.0e-15 82.8 52 75.0
CiPaw.09G190000 Carya illinoinensis HOM05D007758 ORTHO05D009788 1.2e-14 82.4 54 72.2
DCAR_008312 Daucus carota HOM05D007758 ORTHO05D009788 1.2e-14 82.4 53 71.7
Glyma.17G150000 Glycine max HOM05D007758 ORTHO05D009788 1.2e-14 82.4 51 74.5
Lj4g0024059 Lotus japonicus HOM05D007758 ORTHO05D009788 1.2e-14 82.4 51 76.5
PSO782G2991 Papaver somniferum HOM05D007758 ORTHO05D009788 1.2e-14 82.4 54 66.7
Psat4g076760 Pisum sativum HOM05D007758 ORTHO05D009788 1.2e-14 82.4 50 76.0
Ca_03905_v3 Cicer arietinum L. HOM05D000421 ORTHO05D009788 1.5e-14 82.0 50 74.0
Prupe.5G051100 Prunus persica HOM05D007758 ORTHO05D009788 1.5e-14 82.0 52 73.1
RcHm_v2.0_Chr6g0259711 Rosa chinensis HOM05D007758 ORTHO05D009788 1.5e-14 82.0 52 75.0
arahy.Tifrunner.gnm1.ann1.24R365 Arachis hypogaea HOM05D007758 ORTHO05D009788 2.0e-14 81.6 54 70.4
arahy.Tifrunner.gnm1.ann1.EY31BM Arachis hypogaea HOM05D007758 ORTHO05D009788 2.0e-14 81.6 54 70.4
Gohir.D09G192200 Gossypium hirsutum HOM05D007758 ORTHO05D009788 2.0e-14 81.6 50 76.0
Gorai.006G215000 Gossypium raimondii HOM05D007758 ORTHO05D009788 2.0e-14 81.6 50 76.0
Thhalv10026742m.g Eutrema salsugineum HOM05D007758 ORTHO05D009788 2.6e-14 81.3 53 71.7
Hund11300 Selenicereus undatus HOM05D007758 ORTHO05D009788 2.6e-14 81.3 54 72.2
CiPaw.10G048600 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.4e-14 80.9 54 72.2
Ca_22029_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 3.4e-14 80.9 48 75.0
Gohir.A09G197600 Gossypium hirsutum HOM05D007758 ORTHO05D009788 3.4e-14 80.9 49 77.6
MD04G1056100 Malus domestica HOM05D007758 ORTHO05D009788 5.8e-14 80.1 52 73.1
Ciclev10023239m.g Citrus clementina HOM05D007758 ORTHO05D009788 7.6e-14 79.7 49 77.6
GSVIVG01013273001 Vitis vinifera HOM05D007758 ORTHO05D009788 7.6e-14 79.7 53 71.7
BcaB04g18382 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-13 79.3 54 66.7
BcaC06g33532 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 69.8
BcaNung04665 Brassica carinata HOM05D007758 ORTHO05D009788 1.0e-13 79.3 53 69.8
Ca_28157_v3 Cicer arietinum L. HOM05D007758 ORTHO05D009788 1.3e-13 79.0 51 70.6
Haze_08336 Corylus avellana HOM05D007758 ORTHO05D009788 1.7e-13 78.6 41 90.2
PGSC0003DMG400001836 Solanum tuberosum HOM05D007758 ORTHO05D009788 1.7e-13 78.6 53 73.6
Medtr4g099120 Medicago truncatula HOM05D007758 ORTHO05D009788 2.2e-13 78.2 48 72.9
TWI60G0956 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 2.2e-13 78.2 51 72.5
Atru.chr9.1149 Acer truncatum HOM05D007758 ORTHO05D009788 2.9e-13 77.8 48 75.0
A03p50300 Brassica napus HOM05D007758 ORTHO05D009788 2.9e-13 77.8 53 67.9
BraA03t14119Z Brassica rapa HOM05D007758 ORTHO05D009788 2.9e-13 77.8 53 67.9
Lalb_Chr09g0329711 Lupinus albus HOM05D007758 ORTHO05D009788 2.9e-13 77.8 58 69.0
TPR.G17254 Trifolium pratense HOM05D007758 ORTHO05D009788 2.9e-13 77.8 48 72.9
CiPaw.14G095500 Carya illinoinensis HOM05D007758 ORTHO05D009788 3.8e-13 77.4 54 68.5
Cc08_g01520 Coffea canephora HOM05D007758 ORTHO05D009788 3.8e-13 77.4 53 69.8
CiPaw.02G038300 Carya illinoinensis HOM05D007758 ORTHO05D009788 5.0e-13 77.0 54 68.5
Oeu017314.1 Olea europaea HOM05D007758 ORTHO05D009788 5.0e-13 77.0 54 68.5
Medtr3g053460 Medicago truncatula HOM05D007758 ORTHO05D009788 1.1e-12 75.9 48 70.8
CAN.G1445.11 Capsicum annuum HOM05D007758 ORTHO05D009788 1.4e-12 75.5 53 71.7
C07p48590 Brassica napus HOM05D007758 ORTHO05D009788 1.9e-12 75.1 53 66.0
BolC7t45367H Brassica oleracea HOM05D007758 ORTHO05D009788 1.9e-12 75.1 53 66.0
FAN08G1799 Fragaria x ananassa HOM05D007758 ORTHO05D009788 3.2e-12 74.3 52 73.1
Peaxi162Scf00715g00026 Petunia axillaris HOM05D007758 ORTHO05D009788 3.2e-12 74.3 54 64.8
Potri.003G085400 Populus trichocarpa HOM05D007758 ORTHO05D009788 3.2e-12 74.3 75 52.0
CiPaw.14G095700 Carya illinoinensis HOM05D007758 ORTHO05D009788 9.3e-12 72.8 54 64.8
Zm00001eb180740 Zea mays HOM05D007758 ORTHO05D009788 3.5e-11 70.9 43 72.1
Nitab4.5_0010949g0010 Nicotiana tabacum HOM05D007758 ORTHO05D009788 1.9e-09 65.1 41 73.2
RcHm_v2.0_Chr7g0205921 Rosa chinensis HOM05D007758 ORTHO05D009788 3.3e-09 64.3 61 55.7
unitig_744.g24437 Utricularia gibba HOM05D007758 ORTHO05D009788 7.4e-09 63.2 86 43.0
BolC7t45365H Brassica oleracea HOM05D007758 ORTHO05D009788 2.8e-08 61.2 37 73.0
TWI81G0786 Tripterygium wilfordii HOM05D007758 ORTHO05D009788 2.0e-06 55.1 35 71.4


User provided reference genes

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