Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000894 Sechium edule HOM05D004417 ORTHO05D005528 0.0e+00 3182.5 1614 100.0
CsaV3_5G028240 Cucumis sativus L. HOM05D004417 ORTHO05D005528 0.0e+00 2947.9 1615 92.4
MELO3C005286.2 Cucumis melo HOM05D004417 ORTHO05D005528 0.0e+00 2898.2 1640 90.5
ClCG01G006440 Citrullus lanatus HOM05D004417 ORTHO05D005528 0.0e+00 2879.7 1627 90.8
MD16G1020900 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2566.2 1614 80.2
Prupe.1G331400 Prunus persica HOM05D004417 ORTHO05D005528 0.0e+00 2564.3 1616 79.9
Manes.17G082000 Manihot esculenta HOM05D004417 ORTHO05D005528 0.0e+00 2550.0 1615 79.5
MD13G1030100 Malus domestica HOM05D004417 ORTHO05D005528 0.0e+00 2548.1 1615 79.6
RcHm_v2.0_Chr4g0443371 Rosa chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2547.3 1617 79.6
Thecc.02G290300 Theobroma cacao HOM05D004417 ORTHO05D005528 0.0e+00 2533.8 1616 79.2
Atru.chr11.518 Acer truncatum HOM05D004417 ORTHO05D005528 0.0e+00 2528.1 1618 79.6
FvH4_4g33860 Fragaria vesca HOM05D004417 ORTHO05D005528 0.0e+00 2526.9 1615 78.9
FAN12G0749 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2515.7 1628 78.3
CANSAT01G0135 Cannabis sativa HOM05D004417 ORTHO05D005528 0.0e+00 2514.2 1616 78.7
FAN17G2093 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2513.0 1625 78.3
Ciclev10014030m.g Citrus clementina HOM05D004417 ORTHO05D005528 0.0e+00 2512.6 1618 78.4
Potri.008G133300 Populus trichocarpa HOM05D004417 ORTHO05D005528 0.0e+00 2510.3 1617 78.2
Glyma.09G123500 Glycine max HOM05D004417 ORTHO05D005528 0.0e+00 2501.9 1621 77.5
Dinv26250 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2486.4 1615 77.2
TWI74G0839 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 0.0e+00 2486.4 1616 77.0
Gorai.005G158900 Gossypium raimondii HOM05D004417 ORTHO05D005528 0.0e+00 2465.6 1617 77.5
Phvul.003G021100 Phaseolus vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2458.7 1620 76.8
Lj2g0013863 Lotus japonicus HOM05D004417 ORTHO05D005528 0.0e+00 2458.3 1622 76.8
Eucgr.B02952 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2443.3 1615 76.5
Actinidia25877 Actinidia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2434.4 1614 75.8
CSS0030927 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2427.1 1622 75.8
Medtr1g031910 Medicago truncatula HOM05D004417 ORTHO05D005528 0.0e+00 2426.7 1621 75.4
Lalb_Chr13g0290691 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2424.8 1585 77.4
QL03p034852 Quercus lobata HOM05D004417 ORTHO05D005528 0.0e+00 2411.7 1524 79.7
Psat6g045000 Pisum sativum HOM05D004417 ORTHO05D005528 0.0e+00 2404.8 1621 75.3
TPR.G36876 Trifolium pratense HOM05D004417 ORTHO05D005528 0.0e+00 2393.2 1642 73.7
CSS0010110 Camellia sinensis var. sinensis HOM05D004417 ORTHO05D005528 0.0e+00 2390.5 1616 74.9
Ca_12568_v3 Cicer arietinum L. HOM05D004417 ORTHO05D005528 0.0e+00 2388.2 1621 74.5
TAR374G0310 Trochodendron aralioides HOM05D004417 ORTHO05D005528 0.0e+00 2382.1 1618 74.7
Cc11_g08040 Coffea canephora HOM05D004417 ORTHO05D005528 0.0e+00 2357.8 1604 73.2
Lj3A865G68 Lonicera japonica HOM05D004417 ORTHO05D005528 0.0e+00 2355.9 1629 73.6
PGR042G2175 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2345.1 1616 74.0
PGR042G0049 Punica granatum HOM05D004417 ORTHO05D005528 0.0e+00 2344.3 1616 73.6
Sabra08G0101900 Salix brachista HOM05D004417 ORTHO05D005528 0.0e+00 2342.8 1927 65.1
Dinv18635 Davidia involucrata HOM05D004417 ORTHO05D005528 0.0e+00 2333.9 1513 77.1
THA.LOC104822992 Tarenaya hassleriana HOM05D004417 ORTHO05D005528 0.0e+00 2318.5 1629 72.6
EL10Ac6g14152 Beta vulgaris HOM05D004417 ORTHO05D005528 0.0e+00 2306.2 1614 72.7
ECA246G0702 Erigeron canadensis HOM05D004417 ORTHO05D005528 0.0e+00 2303.5 1610 71.4
HanXRQChr17g0567351 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 2300.8 1615 71.7
Aa31LG7G7270 Aethionema arabicum HOM05D004417 ORTHO05D005528 0.0e+00 2298.1 1630 72.0
Sopen05g013790 Solanum pennellii HOM05D004417 ORTHO05D005528 0.0e+00 2292.7 1587 72.4
PSO478G2641 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2284.2 1618 70.8
SalBow8G1470 Salvia bowleyana HOM05D004417 ORTHO05D005528 0.0e+00 2281.9 1668 69.8
Carub.0001s2282 Capsella rubella HOM05D004417 ORTHO05D005528 0.0e+00 2281.5 1629 71.5
AL1G37020 Arabidopsis lyrata HOM05D004417 ORTHO05D005528 0.0e+00 2280.8 1618 71.9
PSO017G2325 Papaver somniferum HOM05D004417 ORTHO05D005528 0.0e+00 2279.2 1618 70.6
Eucgr.B02949 Eucalyptus grandis HOM05D004417 ORTHO05D005528 0.0e+00 2276.1 1614 72.5
Lsat_1_v5_gn_3_55840 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 2273.0 1600 70.9
Nn4g24297 Nelumbo nucifera HOM05D004417 ORTHO05D005528 0.0e+00 2273.0 1619 70.4
Lalb_Chr16g0387721 Lupinus albus HOM05D004417 ORTHO05D005528 0.0e+00 2271.5 1593 71.9
GSVIVG01011680001 Vitis vinifera HOM05D004417 ORTHO05D005528 0.0e+00 2268.8 1647 71.5
Sp1g20700 Schrenkiella parvula HOM05D004417 ORTHO05D005528 0.0e+00 2259.2 1627 71.2
Ah.03g137400 Amaranthus hybridus HOM05D004417 ORTHO05D005528 0.0e+00 2249.9 1602 70.7
MSTRG.7613 Avicennia marina HOM05D004417 ORTHO05D005528 0.0e+00 2248.8 1599 71.1
AT1G23230 Arabidopsis thaliana HOM05D004417 ORTHO05D005528 0.0e+00 2247.6 1610 71.4
Aqoxy3G00033 Aquilegia oxysepala HOM05D004417 ORTHO05D005528 0.0e+00 2244.5 1626 70.0
CARHR023690 Cardamine hirsuta HOM05D004417 ORTHO05D005528 0.0e+00 2243.8 1626 70.9
Gohir.D02G141800 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 2238.8 1449 78.1
AUR62038465 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 2235.3 1627 70.8
Thhalv10006548m.g Eutrema salsugineum HOM05D004417 ORTHO05D005528 0.0e+00 2224.9 1616 70.4
FAN07G1109 Fragaria x ananassa HOM05D004417 ORTHO05D005528 0.0e+00 2217.2 1419 77.9
Sc14g0006960 Simmondsia chinensis HOM05D004417 ORTHO05D005528 0.0e+00 2214.5 1519 73.9
BcaB03g14154 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2213.0 1620 70.2
Migut.L00554 Erythranthe guttata HOM05D004417 ORTHO05D005528 0.0e+00 2207.9 1601 70.5
BcaB07g32314 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2203.7 1607 69.9
BraA07t29150Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2198.3 1620 69.3
A07p13940 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2197.9 1620 69.3
BcaC06g35029 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 2184.5 1621 69.2
BolC5t30944H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2166.7 1621 68.8
arahy.Tifrunner.gnm1.ann1.GYT9TN Arachis hypogaea HOM05D004417 ORTHO05D005528 0.0e+00 2152.5 1956 59.6
A09p41530 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2151.7 1620 68.2
BolC7t42575H Brassica oleracea HOM05D004417 ORTHO05D005528 0.0e+00 2149.4 1621 68.3
C07p20490 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2147.5 1621 68.0
C05p22460 Brassica napus HOM05D004417 ORTHO05D005528 0.0e+00 2145.2 1623 68.4
BraA09t39644Z Brassica rapa HOM05D004417 ORTHO05D005528 0.0e+00 2143.2 1625 67.7
COL.COLO4_13080 Corchorus olitorius HOM05D004417 ORTHO05D005528 0.0e+00 2132.5 1411 77.4
CiPaw.05G190700 Carya illinoinensis HOM05D004417 ORTHO05D005528 0.0e+00 2128.6 1410 77.1
Oeu018613.1 Olea europaea HOM05D004417 ORTHO05D005528 0.0e+00 2094.3 1561 69.0
Os02g0732700 Oryza sativa ssp. japonica HOM05D004417 ORTHO05D005528 0.0e+00 2060.0 1631 65.4
Zm00001eb253700 Zea mays HOM05D004417 ORTHO05D005528 0.0e+00 2055.4 1624 65.0
Hund24934 Selenicereus undatus HOM05D004417 ORTHO05D005528 0.0e+00 2038.5 1559 67.8
CDE07G0372 Ceratophyllum demersum HOM05D004417 ORTHO05D005528 0.0e+00 2023.1 1615 64.5
ATR0753G138 Amborella trichopoda HOM05D004417 ORTHO05D005528 0.0e+00 2003.0 1611 64.8
BcaC05g26233 Brassica carinata HOM05D004417 ORTHO05D005528 0.0e+00 1987.6 1628 64.3
SGA_v2.0_scaffold50G18460 Striga asiatica HOM05D004417 ORTHO05D005528 0.0e+00 1982.6 1635 63.6
Duzib251G0182 Durio zibethinus HOM05D004417 ORTHO05D005528 0.0e+00 1921.7 1201 80.3
HanXRQChr17g0566691 Helianthus annuus HOM05D004417 ORTHO05D005528 0.0e+00 1913.7 1618 62.3
Lsat_1_v5_gn_4_12821 Lactuca sativa HOM05D004417 ORTHO05D005528 0.0e+00 1874.0 1590 60.5
DCAR_007321 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1708.3 1565 59.0
vmacro00393 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 0.0e+00 1659.8 1213 70.0
AUR62014157 Chenopodium quinoa HOM05D004417 ORTHO05D005528 0.0e+00 1656.7 1100 76.0
Peaxi162Scf00376g00032 Petunia axillaris HOM05D004417 ORTHO05D005528 0.0e+00 1588.2 1416 60.7
Rhsim09G0063500 Rhododendron simsii HOM05D004417 ORTHO05D005528 0.0e+00 1509.2 1372 59.5
Nitab4.5_0000018g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 0.0e+00 1482.2 976 76.2
Solyc05g016440.3 Solanum lycopersicum HOM05D004417 ORTHO05D005528 0.0e+00 1445.3 966 75.1
Mapoly0005s0093 Marchantia polymorpha HOM05D004417 ORTHO05D005528 0.0e+00 1441.8 1626 48.8
SEGI_05575 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 0.0e+00 1398.3 1207 58.8
Pp3c27_2940 Physcomitrium patens HOM05D004417 ORTHO05D005528 0.0e+00 1369.8 1624 47.1
SMO364G0727 Selaginella moellendorffii HOM05D004417 ORTHO05D005528 0.0e+00 1314.3 1595 45.8
DCAR_030256 Daucus carota HOM05D004417 ORTHO05D005528 0.0e+00 1205.3 1075 58.9
unitig_899.g15633 Utricularia gibba HOM05D004417 ORTHO05D005528 0.0e+00 1137.5 1621 44.8
Gohir.A03G118100 Gossypium hirsutum HOM05D004417 ORTHO05D005528 0.0e+00 1130.5 732 78.3
Gohir.A03G118200 Gossypium hirsutum HOM05D004417 ORTHO05D005528 3.2e-293 1012.7 649 78.1
Cpa.g.sc2.220 Carica papaya HOM05D004417 ORTHO05D005528 2.2e-254 883.6 586 75.1
Solyc05g016460.2 Solanum lycopersicum HOM05D004417 ORTHO05D005528 1.2e-247 861.3 621 68.1
arahy.Tifrunner.gnm1.ann1.W0X7A3 Arachis hypogaea HOM05D004417 ORTHO05D005528 1.7e-238 830.9 605 72.1
Nitab4.5_0008542g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 9.4e-237 825.1 602 68.6
Nitab4.5_0000018g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 3.6e-236 823.2 589 69.6
VMungo1215G0458 Vigna mungo HOM05D004417 ORTHO05D005528 1.4e-232 811.2 534 77.9
SHI04465 Sapria himalayana HOM05D004417 ORTHO05D005528 1.5e-229 801.2 660 64.5
BcaB07g32312 Brassica carinata HOM05D004417 ORTHO05D005528 1.2e-204 718.4 522 70.7
Nitab4.5_0008542g0030 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.2e-204 718.4 500 73.8
SHI04470 Sapria himalayana HOM05D004417 ORTHO05D005528 1.1e-197 695.3 643 58.0
VMungo1215G3220 Vigna mungo HOM05D004417 ORTHO05D005528 1.1e-197 695.3 519 68.6
vmacro00394 Vaccinium macrocarpon HOM05D004417 ORTHO05D005528 1.8e-195 688.0 511 67.7
Haze_10919 Corylus avellana HOM05D004417 ORTHO05D005528 1.9e-184 651.4 415 78.3
Rhsim09G0063700 Rhododendron simsii HOM05D004417 ORTHO05D005528 1.8e-179 634.8 509 63.9
arahy.Tifrunner.gnm1.ann1.LF64TX Arachis hypogaea HOM05D004417 ORTHO05D005528 5.3e-179 633.3 476 67.2
Actinidia25661 Actinidia chinensis HOM05D004417 ORTHO05D005528 2.9e-169 600.9 553 59.7
VMungo1215G0989 Vigna mungo HOM05D004417 ORTHO05D005528 4.2e-160 570.5 338 82.8
HPP92_024821 Vanilla planifolia HOM05D004417 ORTHO05D005528 1.8e-158 565.1 487 58.3
Haze_10916 Corylus avellana HOM05D004417 ORTHO05D005528 3.0e-142 511.1 366 74.9
Cpa.g.sc2.214 Carica papaya HOM05D004417 ORTHO05D005528 9.7e-133 479.6 325 78.2
Nitab4.5_0008542g0020 Nicotiana tabacum HOM05D004417 ORTHO05D005528 2.0e-125 455.3 331 70.1
Actinidia25662 Actinidia chinensis HOM05D004417 ORTHO05D005528 1.5e-117 429.1 292 76.0
CAN.G45.11 Capsicum annuum HOM05D004417 ORTHO05D005528 4.1e-115 421.0 318 67.0
Psat0ss9816g0080 Pisum sativum HOM05D004417 ORTHO05D005528 5.9e-114 417.2 392 56.6
SEGI_38026 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.2e-111 409.5 401 56.4
Nitab4.5_0005025g0010 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.8e-110 405.6 316 66.8
VMungo1215G1550 Vigna mungo HOM05D004417 ORTHO05D005528 3.4e-109 401.4 255 75.7
SEGI_15839 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 7.5e-109 400.2 358 59.5
Psat0ss9816g0160 Pisum sativum HOM05D004417 ORTHO05D005528 1.5e-93 349.4 247 68.0
Psat2g053360 Pisum sativum HOM05D004417 ORTHO05D005528 8.1e-71 273.9 212 68.9
CiPaw.05G190600 Carya illinoinensis HOM05D004417 ORTHO05D005528 4.9e-68 264.6 160 83.8
Peaxi162Scf00376g00324 Petunia axillaris HOM05D004417 ORTHO05D005528 7.1e-67 260.8 162 77.8
PSO083G0001 Papaver somniferum HOM05D004417 ORTHO05D005528 7.1e-59 234.2 142 75.4
Potri.010G108350 Populus trichocarpa HOM05D004417 ORTHO05D005528 6.7e-57 227.6 142 78.2
SHI04469 Sapria himalayana HOM05D004417 ORTHO05D005528 2.0e-53 216.1 146 73.3
SEGI_21450 Sequoiadendron giganteum HOM05D004417 ORTHO05D005528 1.1e-48 200.3 199 56.3
Gorai.010G022100 Gossypium raimondii HOM05D004417 ORTHO05D003549 2.4e-46 192.6 129 77.5
Cpa.g.sc2.218 Carica papaya HOM05D004417 ORTHO05D005528 7.1e-43 181.0 118 78.0
Gohir.A02G156900 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-38 165.6 143 65.0
Gohir.A03G114800 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-38 165.6 143 65.0
Gohir.D01G098050 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-38 165.6 143 65.0
Gohir.D10G134850 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-38 165.6 143 65.0
Gohir.D13G141401 Gossypium hirsutum HOM05D003153 ORTHO05D003549 3.1e-38 165.6 143 65.0
Gohir.D10G083766 Gossypium hirsutum HOM05D003153 ORTHO05D003549 4.1e-38 165.2 143 64.3
Gorai.011G113600 Gossypium raimondii HOM05D003153 ORTHO05D003549 2.0e-37 162.9 143 64.3
Gohir.D10G083700 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.6e-37 162.5 143 64.3
Haze_10915 Corylus avellana HOM05D004417 ORTHO05D005528 2.2e-36 159.5 102 78.4
Nitab4.5_0008542g0040 Nicotiana tabacum HOM05D004417 ORTHO05D005528 1.4e-35 156.8 139 58.3
QL03p034878 Quercus lobata HOM05D004417 ORTHO05D005528 6.1e-34 151.4 93 78.5
Hund24935 Selenicereus undatus HOM05D008000 ORTHO05D010275 6.1e-34 151.4 113 69.0
CAN.G45.12 Capsicum annuum HOM05D004417 ORTHO05D005528 8.8e-33 147.5 100 69.0
Gohir.1Z049383 Gossypium hirsutum HOM05D003153 ORTHO05D003549 9.1e-30 137.5 130 60.8
Gohir.A13G139960 Gossypium hirsutum HOM05D003153 ORTHO05D003549 2.6e-29 136.0 130 60.0
Duzib084G1091 Durio zibethinus HOM05D004417 ORTHO05D005528 1.0e-28 134.0 84 75.0
Sopen03g014530 Solanum pennellii HOM05D004417 ORTHO05D005528 9.4e-27 127.5 91 70.3
Gorai.002G174000 Gossypium raimondii HOM05D004417 ORTHO05D000624 5.7e-24 118.2 92 64.1
Gohir.D01G141400 Gossypium hirsutum HOM05D004417 ORTHO05D000624 9.7e-24 117.5 92 63.0
HPP92_024820 Vanilla planifolia HOM05D004417 ORTHO05D005528 9.7e-16 90.9 113 50.4
Psat5g193520 Pisum sativum HOM05D001137 ORTHO05D001967 2.2e-15 89.7 74 54.1
HPP92_024819 Vanilla planifolia HOM05D004417 ORTHO05D005528 2.2e-15 89.7 76 64.5
Haze_10917 Corylus avellana HOM05D004417 ORTHO05D005528 4.8e-15 88.6 51 74.5
Psat1g176600 Pisum sativum HOM05D002927 ORTHO05D015040 1.4e-14 87.0 55 76.4
Psat7g192520 Pisum sativum HOM05D002736 ORTHO05D018191 8.5e-12 77.8 155 40.0
Lsat_1_v5_gn_1_113260 Lactuca sativa HOM05D005112 ORTHO05D006681 3.2e-11 75.9 56 66.1
Cpa.g.sc2.221 Carica papaya HOM05D004417 ORTHO05D120462 6.1e-10 71.6 54 68.5
TWI77G0048 Tripterygium wilfordii HOM05D004417 ORTHO05D005528 8.0e-10 71.2 50 66.0
Lsat_1_v5_gn_4_130540 Lactuca sativa HOM05D005112 ORTHO05D006681 1.4e-09 70.5 54 63.0
Migut.L00545 Erythranthe guttata HOM05D004417 ORTHO05D005528 8.8e-09 67.8 50 64.0
Psat0s3527g0040 Pisum sativum HOM05D005005 ORTHO05D006178 6.3e-07 61.6 38 63.2
Psat6g165840 Pisum sativum HOM05D004417 ORTHO05D322506 9.1e-06 57.8 59 47.5


User provided reference genes

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