Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000838 Sechium edule HOM05D005325 ORTHO05D008457 8.0e-108 393.7 185 100.0
MELO3C025867.2 Cucumis melo HOM05D005325 ORTHO05D008457 3.5e-95 351.7 185 88.1
CsaV3_6G016370 Cucumis sativus L. HOM05D005325 ORTHO05D008457 9.5e-93 343.6 185 87.0
Dinv28619 Davidia involucrata HOM05D005325 ORTHO05D008457 1.9e-77 292.7 181 71.8
Cpa.g.sc112.50 Carica papaya HOM05D005325 ORTHO05D008457 5.6e-77 291.2 185 69.7
Prupe.6G060500 Prunus persica HOM05D005325 ORTHO05D008457 4.8e-76 288.1 178 74.2
Cfa011661 Carpinus fangiana HOM05D005325 ORTHO05D008457 2.4e-75 285.8 185 71.4
COL.COLO4_19112 Corchorus olitorius HOM05D005325 ORTHO05D008457 5.3e-75 284.6 185 69.7
Haze_24265 Corylus avellana HOM05D005325 ORTHO05D008457 1.2e-74 283.5 185 70.8
Ciclev10029368m.g Citrus clementina HOM05D005325 ORTHO05D008457 2.0e-74 282.7 185 71.4
Glyma.14G192300 Glycine max HOM05D005325 ORTHO05D008457 2.6e-74 282.3 183 68.3
Glyma.02G225500 Glycine max HOM05D005325 ORTHO05D008457 5.8e-74 281.2 183 68.9
MD11G1079900 Malus domestica HOM05D005325 ORTHO05D008457 5.8e-74 281.2 176 72.2
CiPaw.13G080600 Carya illinoinensis HOM05D005325 ORTHO05D008457 7.6e-74 280.8 185 70.8
Nn2g11401 Nelumbo nucifera HOM05D005325 ORTHO05D008457 7.6e-74 280.8 178 70.2
MSTRG.18491 Avicennia marina HOM05D005325 ORTHO05D008457 9.9e-74 280.4 181 70.2
RcHm_v2.0_Chr5g0068731 Rosa chinensis HOM05D005325 ORTHO05D008457 2.2e-73 279.3 186 69.9
TWI31G1198 Tripterygium wilfordii HOM05D005325 ORTHO05D008457 2.9e-73 278.9 181 70.2
Thecc.09G305000 Theobroma cacao HOM05D005325 ORTHO05D008457 3.8e-73 278.5 183 68.3
Hund04885 Selenicereus undatus HOM05D005325 ORTHO05D008457 4.9e-73 278.1 176 71.0
FvH4_3g38250 Fragaria vesca HOM05D005325 ORTHO05D008457 6.4e-73 277.7 186 70.4
Oeu019913.1 Olea europaea HOM05D005325 ORTHO05D008457 1.4e-72 276.6 185 67.0
Ca_05587_v3 Cicer arietinum L. HOM05D005325 ORTHO05D008457 1.9e-72 276.2 185 69.2
Actinidia25148 Actinidia chinensis HOM05D005325 ORTHO05D008457 3.2e-72 275.4 178 69.7
arahy.Tifrunner.gnm1.ann1.VY3BKH Arachis hypogaea HOM05D005325 ORTHO05D008457 3.2e-72 275.4 186 69.9
CSS0007520 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.2e-72 275.0 178 70.2
CSS0011737 Camellia sinensis var. sinensis HOM05D005325 ORTHO05D008457 4.2e-72 275.0 178 70.2
CAN.G700.24 Capsicum annuum HOM05D005325 ORTHO05D008457 4.2e-72 275.0 178 68.5
FAN11G0298 Fragaria x ananassa HOM05D005325 ORTHO05D008457 7.1e-72 274.2 186 69.9
Psat2g059320 Pisum sativum HOM05D005325 ORTHO05D008457 7.1e-72 274.2 184 67.9
Ah.08g220810 Amaranthus hybridus HOM05D005325 ORTHO05D008457 9.3e-72 273.9 176 71.0
Migut.D00728 Erythranthe guttata HOM05D005325 ORTHO05D008457 1.2e-71 273.5 184 68.5
Duzib170G0996 Durio zibethinus HOM05D005325 ORTHO05D008457 1.6e-71 273.1 183 68.9
LjContig00155g0003403 Lotus japonicus HOM05D005325 ORTHO05D008457 1.6e-71 273.1 184 68.5
Gohir.A05G089800 Gossypium hirsutum HOM05D005325 ORTHO05D008457 2.1e-71 272.7 183 68.9
GSVIVG01024786001 Vitis vinifera HOM05D005325 ORTHO05D008457 2.1e-71 272.7 180 69.4
arahy.Tifrunner.gnm1.ann1.CQ7B2G Arachis hypogaea HOM05D005325 ORTHO05D008457 2.7e-71 272.3 185 70.3
Gohir.D05G090700 Gossypium hirsutum HOM05D005325 ORTHO05D008457 3.5e-71 271.9 180 70.0
Gorai.009G093200 Gossypium raimondii HOM05D005325 ORTHO05D008457 3.5e-71 271.9 180 69.4
Rhsim13G0071900 Rhododendron simsii HOM05D005325 ORTHO05D008457 3.5e-71 271.9 175 72.0
SGA_v2.0_scaffold8G04497 Striga asiatica HOM05D005325 ORTHO05D008457 3.5e-71 271.9 174 69.5
FAN25G2817 Fragaria x ananassa HOM05D005325 ORTHO05D008457 4.6e-71 271.6 183 68.9
DCAR_007389 Daucus carota HOM05D005325 ORTHO05D008457 6.0e-71 271.2 175 70.3
TPR.G24020 Trifolium pratense HOM05D005325 ORTHO05D008457 6.0e-71 271.2 186 67.2
CARHR122960 Cardamine hirsuta HOM05D005325 ORTHO05D008457 1.0e-70 270.4 181 69.1
vmacro02986 Vaccinium macrocarpon HOM05D005325 ORTHO05D008457 1.0e-70 270.4 174 71.8
Medtr5g069880 Medicago truncatula HOM05D005325 ORTHO05D008457 1.3e-70 270.0 185 67.0
Sabra16G0151500 Salix brachista HOM05D005325 ORTHO05D008457 1.8e-70 269.6 185 67.0
Sc12g0000890 Simmondsia chinensis HOM05D005325 ORTHO05D008457 2.3e-70 269.2 176 69.9
Lalb_Chr04g0252301 Lupinus albus HOM05D005325 ORTHO05D008457 3.0e-70 268.9 179 67.0
Manes.02G121500 Manihot esculenta HOM05D005325 ORTHO05D008457 6.7e-70 267.7 182 69.2
Carub.0004s1073 Capsella rubella HOM05D005325 ORTHO05D008457 1.1e-69 266.9 182 67.0
QL01p037417 Quercus lobata HOM05D005325 ORTHO05D008457 1.5e-69 266.5 182 67.0
Eucgr.J01937 Eucalyptus grandis HOM05D005325 ORTHO05D008457 1.9e-69 266.2 182 64.3
Potri.001G249400 Populus trichocarpa HOM05D005325 ORTHO05D008457 1.9e-69 266.2 185 65.9
VMungo0647G2564 Vigna mungo HOM05D005325 ORTHO05D008457 1.9e-69 266.2 183 63.9
PGSC0003DMG400020866 Solanum tuberosum HOM05D005325 ORTHO05D008457 4.3e-69 265.0 185 63.8
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.4e-69 264.2 178 66.3
Phvul.008G262400 Phaseolus vulgaris HOM05D005325 ORTHO05D008457 9.6e-69 263.8 176 68.2
Sopen09g014710 Solanum pennellii HOM05D005325 ORTHO05D008457 9.6e-69 263.8 185 63.8
PGR119G0476 Punica granatum HOM05D005325 ORTHO05D008457 1.3e-68 263.5 181 65.2
Solyc09g031770.3 Solanum lycopersicum HOM05D005325 ORTHO05D008457 1.3e-68 263.5 185 63.8
Cc01_g13970 Coffea canephora HOM05D005325 ORTHO05D008457 3.6e-68 261.9 178 66.3
Sp4g12350 Schrenkiella parvula HOM05D005325 ORTHO05D008457 1.1e-67 260.4 179 66.5
AUR62001679 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.4e-67 260.0 178 67.4
AUR62020101 Chenopodium quinoa HOM05D005325 ORTHO05D008457 1.8e-67 259.6 178 68.0
Nitab4.5_0000408g0140 Nicotiana tabacum HOM05D005325 ORTHO05D008457 1.8e-67 259.6 176 65.9
AL4G24390 Arabidopsis lyrata HOM05D005325 ORTHO05D008457 5.3e-67 258.1 174 67.8
BolC4t23643H Brassica oleracea HOM05D005325 ORTHO05D008457 9.0e-67 257.3 180 65.0
PSO384G1123 Papaver somniferum HOM05D005325 ORTHO05D008457 9.0e-67 257.3 180 65.6
PSO339G0931 Papaver somniferum HOM05D005325 ORTHO05D008457 1.2e-66 256.9 180 65.6
CANSAT54G0458 Cannabis sativa HOM05D005325 ORTHO05D008457 2.6e-66 255.8 185 64.9
AT2G29640 Arabidopsis thaliana HOM05D005325 ORTHO05D008457 3.4e-66 255.4 171 67.8
ECA248G3745 Erigeron canadensis HOM05D005325 ORTHO05D008457 4.5e-66 255.0 172 70.3
BcaB02g10271 Brassica carinata HOM05D005325 ORTHO05D008457 5.8e-66 254.6 182 63.7
BcaC02g11048 Brassica carinata HOM05D005325 ORTHO05D008457 5.8e-66 254.6 182 63.7
Thhalv10017013m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 7.6e-66 254.2 171 67.8
Aqoxy4G02653 Aquilegia oxysepala HOM05D005325 ORTHO05D008457 1.3e-65 253.4 177 65.0
Aa31LG5G6860 Aethionema arabicum HOM05D005325 ORTHO05D008457 8.4e-65 250.8 181 64.1
Lsat_1_v5_gn_5_172281 Lactuca sativa HOM05D005325 ORTHO05D008457 2.4e-64 249.2 182 64.3
A05p15750 Brassica napus HOM05D005325 ORTHO05D008457 9.3e-64 247.3 177 63.8
BraA05t20490Z Brassica rapa HOM05D005325 ORTHO05D008457 9.3e-64 247.3 177 63.8
TAR636G1969 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.6e-63 246.5 156 70.5
C04p21170 Brassica napus HOM05D005325 ORTHO05D008457 1.3e-62 243.4 182 62.1
unitig_62.g23862 Utricularia gibba HOM05D005325 ORTHO05D008457 1.8e-62 243.0 181 61.3
unitig_64.g29774 Utricularia gibba HOM05D005325 ORTHO05D008457 1.8e-62 243.0 181 61.3
Peaxi162Scf00116g00163 Petunia axillaris HOM05D005325 ORTHO05D008457 6.7e-62 241.1 178 61.8
Zm00001eb011730 Zea mays HOM05D005325 ORTHO05D008457 8.7e-62 240.7 173 60.7
FAN21G2059 Fragaria x ananassa HOM05D005325 ORTHO05D008457 1.1e-61 240.4 153 73.2
Os03g0265200 Oryza sativa ssp. japonica HOM05D005325 ORTHO05D008457 1.3e-60 236.9 175 58.9
Lj1P141T46 Lonicera japonica HOM05D005325 ORTHO05D008457 4.8e-60 235.0 158 67.1
BcaB06g28320 Brassica carinata HOM05D005325 ORTHO05D008457 8.1e-60 234.2 181 60.8
FAN16G2295 Fragaria x ananassa HOM05D005325 ORTHO05D008457 9.0e-59 230.7 153 68.0
EL10Ac7g16130 Beta vulgaris HOM05D005325 ORTHO05D008457 1.5e-58 229.9 175 62.3
TAR633G2421 Trochodendron aralioides HOM05D005325 ORTHO05D008457 1.5e-58 229.9 151 68.9
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 1.0e-57 227.3 168 62.5
BolC4t27390H Brassica oleracea HOM05D005325 ORTHO05D008457 1.0e-57 227.3 178 60.7
Duzib168G2216 Durio zibethinus HOM05D005325 ORTHO05D008457 1.0e-57 227.3 171 61.4
Nitab4.5_0006983g0030 Nicotiana tabacum HOM05D005325 ORTHO05D008457 2.2e-57 226.1 154 66.2
A04p22570 Brassica napus HOM05D005325 ORTHO05D008457 4.9e-57 224.9 181 56.9
BraA04t17802Z Brassica rapa HOM05D005325 ORTHO05D008457 2.7e-55 219.2 171 58.5
BcaC02g08075 Brassica carinata HOM05D005325 ORTHO05D008457 6.0e-55 218.0 179 59.8
HPP92_015197 Vanilla planifolia HOM05D005325 ORTHO05D008457 7.4e-53 211.1 160 58.8
SHI11316 Sapria himalayana HOM05D005325 ORTHO05D008457 1.6e-52 209.9 171 59.1
Thhalv10017876m.g Eutrema salsugineum HOM05D005325 ORTHO05D008457 2.3e-46 189.5 134 64.2
Mapoly0026s0005 Marchantia polymorpha HOM05D005325 ORTHO05D008457 7.4e-45 184.5 174 47.7
AagrBONN_evm.TU.Sc2ySwM_362.267 Anthoceros agrestis HOM05D005325 ORTHO05D008457 9.7e-45 184.1 176 48.3
Pp3c13_16720 Physcomitrium patens HOM05D005325 ORTHO05D008457 2.8e-44 182.6 175 46.9
C04p58710 Brassica napus HOM05D005325 ORTHO05D008457 1.2e-39 167.2 130 60.8
AagrBONN_evm.TU.Sc2ySwM_362.272 Anthoceros agrestis HOM05D005325 ORTHO05D008457 3.6e-39 165.6 180 44.4
CDE10G0077 Ceratophyllum demersum HOM05D000561 ORTHO05D000514 8.8e-38 161.0 116 64.7
ClCG06G015800 Citrullus lanatus HOM05D005325 ORTHO05D008457 2.2e-36 156.4 153 54.9
SMO351G0628 Selaginella moellendorffii HOM05D005325 ORTHO05D008457 2.0e-34 149.8 175 42.3
MBI14_g39232_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 1.4e-30 137.1 133 52.6
Atru.chr3.4243 Acer truncatum HOM05D005325 ORTHO05D008457 1.0e-22 110.9 87 62.1
Haze_27525 Corylus avellana HOM05D005325 ORTHO05D008457 9.7e-21 104.4 191 33.5
Cre03.g146707 Chlamydomonas reinhardtii HOM05D005325 ORTHO05D008457 3.5e-18 95.9 179 36.9
Aa31LG5G6850 Aethionema arabicum HOM05D005325 ORTHO05D008457 1.6e-15 87.0 59 59.3
Lsat_1_v5_gn_9_104180 Lactuca sativa HOM05D005325 ORTHO05D024237 2.6e-13 79.7 97 44.3
CBR_g865 Chara braunii HOM05D005750 ORTHO05D007126 1.6e-07 60.5 159 31.4
SGA_v2.0_scaffold240G44116 Striga asiatica HOM05D005750 ORTHO05D007126 1.8e-06 57.0 189 28.0
Sopen10g036170 Solanum pennellii HOM05D005750 ORTHO05D007126 6.8e-06 55.1 147 29.9


User provided reference genes

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