Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000829 Sechium edule HOM05D005075 ORTHO05D007097 0.0e+00 1412.9 702 100.0
ClCG06G008480 Citrullus lanatus HOM05D005075 ORTHO05D007097 0.0e+00 1234.9 694 87.8
MELO3C018283.2 Cucumis melo HOM05D005075 ORTHO05D007097 0.0e+00 1232.6 702 85.6
CsaV3_5G015350 Cucumis sativus L. HOM05D005075 ORTHO05D007097 0.0e+00 1228.4 702 85.8
Prupe.1G232900 Prunus persica HOM05D005075 ORTHO05D007097 5.3e-293 1010.7 698 70.6
FvH4_4g24220 Fragaria vesca HOM05D005075 ORTHO05D007097 9.0e-293 1010.0 707 69.4
FAN07G0914 Fragaria x ananassa HOM05D005075 ORTHO05D007097 1.4e-290 1002.7 732 67.2
MD13G1113200 Malus domestica HOM05D005075 ORTHO05D007097 1.9e-287 992.3 698 69.6
CANSAT01G2132 Cannabis sativa HOM05D005075 ORTHO05D007097 5.6e-287 990.7 707 69.2
QL03p054705 Quercus lobata HOM05D005075 ORTHO05D007097 6.2e-286 987.3 711 68.8
FAN12G0151 Fragaria x ananassa HOM05D005075 ORTHO05D007097 2.0e-284 982.2 770 63.8
Ciclev10030830m.g Citrus clementina HOM05D005075 ORTHO05D007097 2.2e-283 978.8 706 68.0
COL.COLO4_23627 Corchorus olitorius HOM05D005075 ORTHO05D007097 2.2e-283 978.8 709 67.4
RcHm_v2.0_Chr4g0431061 Rosa chinensis HOM05D005075 ORTHO05D007097 6.5e-283 977.2 706 68.6
Haze_12371 Corylus avellana HOM05D005075 ORTHO05D007097 1.1e-279 966.5 712 67.3
TWI18G0401 Tripterygium wilfordii HOM05D005075 ORTHO05D007097 1.9e-279 965.7 709 67.7
CSS0028948 Camellia sinensis var. sinensis HOM05D005075 ORTHO05D007097 2.1e-278 962.2 709 68.0
Thecc.02G274600 Theobroma cacao HOM05D005075 ORTHO05D007097 9.0e-277 956.8 708 66.4
Hma1.2p1_0167F.1_g073740 Hydrangea macrophylla HOM05D005075 ORTHO05D007097 1.2e-276 956.4 711 66.1
Sabra08G0136200 Salix brachista HOM05D005075 ORTHO05D007097 5.9e-276 954.1 746 64.2
Ca_16480_v3 Cicer arietinum L. HOM05D005075 ORTHO05D007097 1.4e-274 949.5 702 65.5
Lj3g0026022 Lotus japonicus HOM05D005075 ORTHO05D007097 1.9e-274 949.1 703 65.6
GSVIVG01010340001 Vitis vinifera HOM05D005075 ORTHO05D007097 1.9e-274 949.1 690 68.4
Gohir.A03G128400 Gossypium hirsutum HOM05D005075 ORTHO05D007097 2.5e-274 948.7 709 66.0
Gorai.005G171200 Gossypium raimondii HOM05D005075 ORTHO05D007097 3.2e-274 948.3 709 65.7
Rhsim12G0029800 Rhododendron simsii HOM05D005075 ORTHO05D007097 7.2e-274 947.2 743 64.6
arahy.Tifrunner.gnm1.ann1.S726NC Arachis hypogaea HOM05D005075 ORTHO05D007097 1.6e-273 946.0 703 65.4
Phvul.001G259800 Phaseolus vulgaris HOM05D005075 ORTHO05D007097 4.6e-273 944.5 702 66.2
Glyma.11G248400 Glycine max HOM05D005075 ORTHO05D007097 3.0e-272 941.8 702 65.8
Psat5g094520 Pisum sativum HOM05D005075 ORTHO05D007097 5.1e-272 941.0 702 64.7
Carub.0001s2573 Capsella rubella HOM05D005075 ORTHO05D007097 1.1e-271 939.9 706 63.6
Lalb_Chr23g0277981 Lupinus albus HOM05D005075 ORTHO05D007097 9.7e-271 936.8 707 64.8
Thhalv10006951m.g Eutrema salsugineum HOM05D005075 ORTHO05D007097 1.3e-270 936.4 707 64.2
AT1G24340 Arabidopsis thaliana HOM05D005075 ORTHO05D007097 4.8e-270 934.5 707 63.2
VMungo1383G1024 Vigna mungo HOM05D005075 ORTHO05D007097 8.2e-270 933.7 702 65.5
PGR119G0347 Punica granatum HOM05D005075 ORTHO05D007097 1.4e-269 932.9 687 67.1
Lj3A1065G86 Lonicera japonica HOM05D005075 ORTHO05D007097 4.1e-269 931.4 714 65.3
Cc11_g16630 Coffea canephora HOM05D005075 ORTHO05D007097 9.1e-269 930.2 707 64.6
arahy.Tifrunner.gnm1.ann1.I0S54J Arachis hypogaea HOM05D005075 ORTHO05D007097 3.4e-268 928.3 703 64.9
BcaC06g35258 Brassica carinata HOM05D005075 ORTHO05D007097 1.7e-267 926.0 708 64.3
Oeu056679.1 Olea europaea HOM05D005075 ORTHO05D007097 2.2e-267 925.6 699 64.1
Nn4g22400 Nelumbo nucifera HOM05D005075 ORTHO05D007097 3.8e-267 924.9 704 64.9
Medtr3g085660 Medicago truncatula HOM05D005075 ORTHO05D007097 8.5e-267 923.7 733 61.3
Sp1g23430 Schrenkiella parvula HOM05D005075 ORTHO05D007097 1.1e-266 923.3 708 63.6
TPR.G22444 Trifolium pratense HOM05D005075 ORTHO05D007097 1.1e-266 923.3 711 62.3
BolC7t42310H Brassica oleracea HOM05D005075 ORTHO05D007097 2.5e-266 922.2 708 64.0
DCAR_024086 Daucus carota HOM05D005075 ORTHO05D007097 2.5e-266 922.2 683 66.5
C07p18000 Brassica napus HOM05D005075 ORTHO05D007097 4.2e-266 921.4 708 63.8
Cpa.g.sc27.216 Carica papaya HOM05D005075 ORTHO05D007097 4.2e-266 921.4 712 64.6
CARHR026760 Cardamine hirsuta HOM05D005075 ORTHO05D007097 5.5e-266 921.0 706 63.0
A07p12060 Brassica napus HOM05D005075 ORTHO05D007097 1.2e-265 919.8 708 64.0
Carub.0007s3241 Capsella rubella HOM05D005075 ORTHO05D007097 1.2e-265 919.8 705 62.8
AL6G39900 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 1.6e-265 919.5 707 62.5
BraA07t28994Z Brassica rapa HOM05D005075 ORTHO05D007097 1.8e-264 916.0 708 63.7
AL1G40580 Arabidopsis lyrata HOM05D005075 ORTHO05D007097 5.1e-264 914.4 706 62.0
HanXRQChr08g0233581 Helianthus annuus HOM05D005075 ORTHO05D007097 6.7e-264 914.1 699 64.1
THA.LOC104799053 Tarenaya hassleriana HOM05D005075 ORTHO05D007097 6.7e-264 914.1 704 62.9
Dinv14804 Davidia involucrata HOM05D005075 ORTHO05D007097 2.8e-262 908.7 706 63.7
Migut.K00700 Erythranthe guttata HOM05D005075 ORTHO05D007097 3.7e-262 908.3 709 63.2
PSO782G5362 Papaver somniferum HOM05D005075 ORTHO05D007097 1.4e-261 906.4 703 64.0
Eucgr.H04663 Eucalyptus grandis HOM05D005075 ORTHO05D007097 2.4e-261 905.6 661 68.1
MBI08_g36442_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 4.1e-261 904.8 666 66.8
ECA233G3670 Erigeron canadensis HOM05D005075 ORTHO05D007097 6.9e-261 904.0 650 67.4
Aqoxy3G01457 Aquilegia oxysepala HOM05D005075 ORTHO05D007097 1.5e-260 902.9 672 65.6
SalBow1G5463 Salvia bowleyana HOM05D005075 ORTHO05D007097 5.0e-259 897.9 719 62.9
SalBow1G4350 Salvia bowleyana HOM05D005075 ORTHO05D007097 3.2e-258 895.2 719 62.7
vmacro01083 Vaccinium macrocarpon HOM05D005075 ORTHO05D007097 7.2e-258 894.0 755 60.9
Aa31LG7G9750 Aethionema arabicum HOM05D005075 ORTHO05D007097 2.1e-257 892.5 705 61.8
PGSC0003DMG400022618 Solanum tuberosum HOM05D005075 ORTHO05D007097 4.7e-257 891.3 658 65.7
Solyc05g006810.4 Solanum lycopersicum HOM05D005075 ORTHO05D007097 6.1e-257 891.0 678 64.0
Potri.008G178400 Populus trichocarpa HOM05D005075 ORTHO05D007097 1.3e-254 883.2 611 69.7
Nitab4.5_0002129g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 1.6e-252 876.3 657 65.1
Hund25442 Selenicereus undatus HOM05D005075 ORTHO05D007097 6.3e-246 854.4 645 66.4
Nitab4.5_0000537g0120 Nicotiana tabacum HOM05D005075 ORTHO05D007097 8.2e-246 854.0 677 62.9
SGA_v2.0_scaffold14G07137 Striga asiatica HOM05D005075 ORTHO05D007097 1.9e-242 842.8 708 60.0
Manes.13G016100 Manihot esculenta HOM05D005075 ORTHO05D007097 7.2e-242 840.9 705 60.3
EL10Ac6g13442 Beta vulgaris HOM05D005075 ORTHO05D007097 4.7e-241 838.2 646 63.3
Peaxi162Scf00804g00120 Petunia axillaris HOM05D005075 ORTHO05D007097 4.1e-237 825.1 709 59.0
Zm00001eb014870 Zea mays HOM05D005075 ORTHO05D007097 2.7e-236 822.4 669 60.2
ATR0824G188 Amborella trichopoda HOM05D005075 ORTHO05D007097 1.3e-235 820.1 684 60.2
Nitab4.5_0001802g0060 Nicotiana tabacum HOM05D005075 ORTHO05D007097 2.2e-235 819.3 658 62.0
AUR62005575 Chenopodium quinoa HOM05D005075 ORTHO05D007097 5.2e-232 808.1 702 59.3
Lsat_1_v5_gn_8_149841 Lactuca sativa HOM05D005075 ORTHO05D007097 4.5e-228 795.0 1002 44.9
Peaxi162Scf00634g00011 Petunia axillaris HOM05D005075 ORTHO05D007097 8.9e-224 780.8 695 57.8
TAR374G0458 Trochodendron aralioides HOM05D005075 ORTHO05D007097 5.7e-223 778.1 546 70.0
PSO063G5600 Papaver somniferum HOM05D005075 ORTHO05D007097 6.4e-222 774.6 609 63.7
Sc11g0000650 Simmondsia chinensis HOM05D005075 ORTHO05D007097 3.0e-219 765.8 551 67.2
Duzib251G0605 Durio zibethinus HOM05D005075 ORTHO05D007097 8.9e-216 754.2 708 56.1
Cfa009316 Carpinus fangiana HOM05D005075 ORTHO05D007097 2.6e-215 752.7 525 70.3
AUR62024155 Chenopodium quinoa HOM05D005075 ORTHO05D007097 6.4e-214 748.0 627 60.4
Sopen05g002750 Solanum pennellii HOM05D005075 ORTHO05D007097 5.6e-210 734.9 563 63.2
Gohir.D02G152200 Gossypium hirsutum HOM05D005075 ORTHO05D007097 4.1e-205 718.8 511 68.5
CDE02G1220 Ceratophyllum demersum HOM05D005075 ORTHO05D007097 1.1e-202 710.7 660 55.8
Ah.03g133860 Amaranthus hybridus HOM05D005075 ORTHO05D007097 6.4e-198 694.9 670 53.9
unitig_747.g21130 Utricularia gibba HOM05D005075 ORTHO05D007097 4.2e-189 665.6 578 58.3
SHI17941 Sapria himalayana HOM05D005075 ORTHO05D007097 5.8e-183 645.2 625 54.9
Glyma.18G008800 Glycine max HOM05D005075 ORTHO05D007097 2.9e-182 642.9 429 71.1
Mapoly0042s0063 Marchantia polymorpha HOM05D005075 ORTHO05D007097 9.9e-175 617.8 658 48.6
SMO356G0356 Selaginella moellendorffii HOM05D005075 ORTHO05D007097 1.8e-171 607.1 670 47.0
SEGI_08672 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 5.9e-151 538.9 439 59.5
HPP92_001259 Vanilla planifolia HOM05D005075 ORTHO05D007097 2.7e-148 530.0 375 66.7
CiPaw.05G114700 Carya illinoinensis HOM05D005075 ORTHO05D007097 4.7e-148 529.3 389 67.4
Pp3c26_6380 Physcomitrium patens HOM05D005075 ORTHO05D007097 3.6e-132 476.5 519 46.6
TPR.G9414 Trifolium pratense HOM05D005075 ORTHO05D007097 8.2e-129 465.3 385 59.0
CAN.G2246.1 Capsicum annuum HOM05D005075 ORTHO05D007097 1.0e-118 431.8 385 56.6
AagrBONN_evm.TU.Sc2ySwM_228.4178 Anthoceros agrestis HOM05D005075 ORTHO05D007097 7.5e-114 415.6 432 47.9
TPR.G492 Trifolium pratense HOM05D005075 ORTHO05D007097 2.9e-110 403.7 324 60.5
HPP92_001244 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.8e-110 403.3 316 61.7
Os01g0901700 Oryza sativa ssp. japonica HOM05D005075 ORTHO05D007097 2.3e-99 367.5 278 63.7
Actinidia08085 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.5e-98 364.8 321 58.6
MCO06G130 Micromonas commoda HOM05D005075 ORTHO05D007097 9.2e-96 355.5 754 34.6
CiPaw.05G114800 Carya illinoinensis HOM05D005075 ORTHO05D007097 8.6e-94 349.0 271 64.6
SEGI_28928 Sequoiadendron giganteum HOM05D005075 ORTHO05D007097 2.3e-86 324.3 353 48.7
PGSC0003DMG400021087 Solanum tuberosum HOM05D005075 ORTHO05D007097 5.6e-85 319.7 238 63.0
Haze_02705 Corylus avellana HOM05D005075 ORTHO05D007097 1.0e-78 298.9 234 65.0
CBR_g21048 Chara braunii HOM05D000019 ORTHO05D000002 4.2e-72 276.9 392 39.3
Cre14.g630895 Chlamydomonas reinhardtii HOM05D005075 ORTHO05D007097 2.7e-71 274.2 646 33.3
HPP92_001258 Vanilla planifolia HOM05D005075 ORTHO05D007097 3.9e-70 270.4 284 51.1
Atru.chr11.2265 Acer truncatum HOM05D005075 ORTHO05D007097 3.2e-64 250.8 422 35.1
PRCOL_00001291 Prasinoderma coloniale HOM05D005075 ORTHO05D007097 1.7e-57 228.4 532 30.3
Atru.chr12.1465 Acer truncatum HOM05D005075 ORTHO05D007097 6.3e-44 183.3 351 36.8
Atru.chr11.2253 Acer truncatum HOM05D005075 ORTHO05D007097 5.5e-40 170.2 276 36.2
MBI07_g43659_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 6.7e-38 163.3 134 59.7
CAN.G27.28 Capsicum annuum HOM05D005075 ORTHO05D007097 6.3e-36 156.8 99 73.7
MBI05_g16127_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 3.1e-35 154.5 214 42.1
MBI18_g19470_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D007097 1.0e-33 149.4 222 39.6
Actinidia30671 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.1e-32 146.0 112 67.0
MBI18_g03939_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 7.2e-32 143.3 219 39.7
MD16G1112300 Malus domestica HOM05D005075 ORTHO05D007097 6.3e-28 130.2 103 62.1
Actinidia30670 Actinidia chinensis HOM05D005075 ORTHO05D007097 1.4e-27 129.0 125 55.2
AagrBONN_evm.TU.Sc2ySwM_228.4177 Anthoceros agrestis HOM05D005075 ORTHO05D007097 8.0e-23 113.2 80 62.5
Atru.chr11.2251 Acer truncatum HOM05D005075 ORTHO05D007097 3.7e-20 104.4 82 53.7
MD16G1112400 Malus domestica HOM05D005075 ORTHO05D007097 5.0e-17 94.0 167 37.1
Cfa025560 Carpinus fangiana HOM05D005075 ORTHO05D122628 5.5e-16 90.5 388 24.5
Cfa026038 Carpinus fangiana HOM05D005075 ORTHO05D007097 6.1e-15 87.0 381 25.2
HPP92_001243 Vanilla planifolia HOM05D005075 ORTHO05D007097 1.4e-14 85.9 87 46.0
MBI16_g25874_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.2e-13 82.8 64 59.4
COL.COLO4_15613 Corchorus olitorius HOM05D005075 ORTHO05D162910 2.0e-13 82.0 431 23.4
MBI13_g10206_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.4e-13 80.9 46 73.9
Cfa026189 Carpinus fangiana HOM05D002287 ORTHO05D123242 7.5e-13 80.1 86 43.0
MBI18_g33166_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.3e-12 79.3 53 62.3
MBI18_g47010_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.7e-12 79.0 46 71.7
MBI18_g06981_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 1.8e-11 75.5 46 69.6
MD16G1112100 Malus domestica HOM05D005075 ORTHO05D037935 1.8e-11 75.5 60 68.3
MBI18_g03943_MAGBIO Magnolia biondii HOM05D005075 ORTHO05D020846 4.1e-11 74.3 50 64.0
Atru.chr11.2270 Acer truncatum HOM05D005075 ORTHO05D037935 2.5e-08 65.1 57 59.6
Pp3s34_300 Physcomitrium patens HOM05D000549 ORTHO05D006202 2.5e-08 65.1 217 28.6
Oeu026858.1 Olea europaea HOM05D005505 ORTHO05D006974 4.2e-08 64.3 223 29.1
Sabra10G0048500 Salix brachista HOM05D005075 ORTHO05D007097 1.4e-06 59.3 35 74.3


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