Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000814 Sechium edule HOM05D005658 ORTHO05D006989 1.0e-108 396.7 196 100.0
ClCG09G001890 Citrullus lanatus HOM05D005658 ORTHO05D006989 3.1e-86 322.0 195 80.5
CsaV3_7G033450 Cucumis sativus L. HOM05D005658 ORTHO05D006989 5.6e-83 311.2 192 78.6
Sed0023183 Sechium edule HOM05D005658 ORTHO05D006989 6.4e-79 297.7 192 75.0
MELO3C027085.2 Cucumis melo HOM05D005658 ORTHO05D006989 1.2e-77 293.5 195 75.4
Eucgr.J02954 Eucalyptus grandis HOM05D005658 ORTHO05D006989 2.5e-67 259.2 190 66.8
TAR383G0711 Trochodendron aralioides HOM05D005658 ORTHO05D006989 2.5e-67 259.2 196 64.8
CiPaw.01G234800 Carya illinoinensis HOM05D005658 ORTHO05D006989 2.1e-66 256.1 196 64.8
Glyma.08G203800 Glycine max HOM05D005658 ORTHO05D006989 2.8e-66 255.8 196 63.8
CANSAT56G4082 Cannabis sativa HOM05D005658 ORTHO05D006989 4.7e-66 255.0 196 65.8
GSVIVG01017054001 Vitis vinifera HOM05D005658 ORTHO05D006989 6.2e-66 254.6 196 64.3
Lalb_Chr04g0262841 Lupinus albus HOM05D005658 ORTHO05D006989 8.1e-66 254.2 195 63.6
Glyma.07G018600 Glycine max HOM05D005658 ORTHO05D006989 1.1e-65 253.8 196 62.8
CDE08G1506 Ceratophyllum demersum HOM05D005658 ORTHO05D006989 1.4e-65 253.4 190 65.3
Nitab4.5_0004205g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 1.4e-65 253.4 185 66.5
PGR102G0856 Punica granatum HOM05D005658 ORTHO05D006989 1.4e-65 253.4 197 64.5
GSVIVG01017053001 Vitis vinifera HOM05D005658 ORTHO05D006989 2.3e-65 252.7 196 62.8
VMungo0331G1814 Vigna mungo HOM05D005658 ORTHO05D006989 3.1e-65 252.3 195 61.5
Haze_16346 Corylus avellana HOM05D005658 ORTHO05D006989 6.8e-65 251.1 196 62.2
Cfa002103 Carpinus fangiana HOM05D005658 ORTHO05D006989 1.5e-64 250.0 196 62.8
Nn3g18122 Nelumbo nucifera HOM05D005658 ORTHO05D006989 1.5e-64 250.0 190 64.2
Phvul.010G147700 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 1.5e-64 250.0 196 62.8
CANSAT56G2118 Cannabis sativa HOM05D005658 ORTHO05D006989 4.4e-64 248.4 190 66.3
Solyc03g120540.3 Solanum lycopersicum HOM05D005658 ORTHO05D006989 5.8e-64 248.1 185 63.8
CAN.G438.34 Capsicum annuum HOM05D005658 ORTHO05D006989 7.5e-64 247.7 185 63.8
Cc04_g02920 Coffea canephora HOM05D005658 ORTHO05D006989 7.5e-64 247.7 190 63.7
Manes.04G130900 Manihot esculenta HOM05D005658 ORTHO05D006989 7.5e-64 247.7 196 62.8
Psat5g078360 Pisum sativum HOM05D005658 ORTHO05D006989 9.9e-64 247.3 191 63.4
ECA234G0336 Erigeron canadensis HOM05D005658 ORTHO05D006989 1.7e-63 246.5 190 63.2
SGA_v2.0_scaffold68G22977 Striga asiatica HOM05D005658 ORTHO05D006989 1.7e-63 246.5 186 63.4
MSTRG.9467 Avicennia marina HOM05D005658 ORTHO05D006989 3.7e-63 245.4 183 65.0
Nitab4.5_0001315g0030 Nicotiana tabacum HOM05D005658 ORTHO05D006989 3.7e-63 245.4 185 64.3
AL3G28880 Arabidopsis lyrata HOM05D005658 ORTHO05D006989 8.3e-63 244.2 193 62.7
Potri.003G051700 Populus trichocarpa HOM05D005658 ORTHO05D006989 1.1e-62 243.8 190 62.6
ATR0736G109 Amborella trichopoda HOM05D005658 ORTHO05D006989 1.4e-62 243.4 188 63.3
Prupe.3G064800 Prunus persica HOM05D005658 ORTHO05D006989 1.4e-62 243.4 194 62.9
Lj5g0010105 Lotus japonicus HOM05D005658 ORTHO05D006989 1.9e-62 243.0 196 62.8
Ciclev10026541m.g Citrus clementina HOM05D005658 ORTHO05D006989 2.4e-62 242.7 189 64.6
PGSC0003DMG400002629 Solanum tuberosum HOM05D005658 ORTHO05D006989 2.4e-62 242.7 184 63.6
TPR.G38603 Trifolium pratense HOM05D005658 ORTHO05D006989 2.4e-62 242.7 191 61.8
unitig_746.g26661 Utricularia gibba HOM05D005658 ORTHO05D006989 3.2e-62 242.3 193 60.1
BcaC09g48588 Brassica carinata HOM05D005658 ORTHO05D006989 4.1e-62 241.9 197 63.5
Thhalv10021560m.g Eutrema salsugineum HOM05D005658 ORTHO05D006989 5.4e-62 241.5 197 63.5
Lj5g0006747 Lotus japonicus HOM05D005658 ORTHO05D006989 5.4e-62 241.5 190 63.2
SalBow7G0412 Salvia bowleyana HOM05D005658 ORTHO05D006989 5.4e-62 241.5 183 63.9
arahy.Tifrunner.gnm1.ann1.5XEL3K Arachis hypogaea HOM05D005658 ORTHO05D006989 7.1e-62 241.1 185 62.2
HanXRQChr10g0313501 Helianthus annuus HOM05D005658 ORTHO05D006989 2.1e-61 239.6 185 64.3
CARHR091380 Cardamine hirsuta HOM05D005658 ORTHO05D006989 2.7e-61 239.2 190 63.2
Sopen03g039400 Solanum pennellii HOM05D005658 ORTHO05D006989 2.7e-61 239.2 175 65.7
Thecc.06G094500 Theobroma cacao HOM05D005658 ORTHO05D006989 3.5e-61 238.8 196 61.2
AT3G16190 Arabidopsis thaliana HOM05D005658 ORTHO05D006989 4.6e-61 238.4 193 62.2
A05p33310 Brassica napus HOM05D005658 ORTHO05D006989 6.0e-61 238.0 198 62.6
THA.LOC104817977 Tarenaya hassleriana HOM05D005658 ORTHO05D006989 7.8e-61 237.7 194 60.8
C05p50310 Brassica napus HOM05D005658 ORTHO05D006989 2.3e-60 236.1 198 63.1
DCAR_016205 Daucus carota HOM05D005658 ORTHO05D006989 3.0e-60 235.7 189 61.4
Duzib235G1329 Durio zibethinus HOM05D005658 ORTHO05D006989 3.0e-60 235.7 196 61.7
Psat7g255000 Pisum sativum HOM05D005658 ORTHO05D006989 3.0e-60 235.7 196 59.7
MD09G1208600 Malus domestica HOM05D005658 ORTHO05D006989 5.1e-60 235.0 195 59.5
Sp3g14560 Schrenkiella parvula HOM05D005658 ORTHO05D006989 6.6e-60 234.6 197 60.9
RcHm_v2.0_Chr2g0139251 Rosa chinensis HOM05D005658 ORTHO05D006989 1.1e-59 233.8 196 59.7
Gorai.003G064300 Gossypium raimondii HOM05D005658 ORTHO05D006989 1.5e-59 233.4 192 60.9
PSO421G0294 Papaver somniferum HOM05D005658 ORTHO05D006989 1.5e-59 233.4 193 61.7
FAN14G0081 Fragaria x ananassa HOM05D005658 ORTHO05D006989 1.9e-59 233.0 196 61.2
SEGI_12338 Sequoiadendron giganteum HOM05D005658 ORTHO05D006989 1.9e-59 233.0 188 61.2
FvH4_6g31890 Fragaria vesca HOM05D005658 ORTHO05D006989 2.5e-59 232.6 196 61.2
Gohir.D03G062533 Gossypium hirsutum HOM05D005658 ORTHO05D006989 3.3e-59 232.3 192 60.9
BraA05t22156Z Brassica rapa HOM05D005658 ORTHO05D006989 4.3e-59 231.9 206 60.7
QL05p021437 Quercus lobata HOM05D005658 ORTHO05D006989 4.3e-59 231.9 170 67.1
SalBow7G1899 Salvia bowleyana HOM05D005658 ORTHO05D006989 4.3e-59 231.9 187 60.4
Aqoxy7G01547 Aquilegia oxysepala HOM05D005658 ORTHO05D006989 5.6e-59 231.5 190 60.5
VMungo0331G0597 Vigna mungo HOM05D005658 ORTHO05D006989 5.6e-59 231.5 196 60.2
arahy.Tifrunner.gnm1.ann1.17ZCGM Arachis hypogaea HOM05D005658 ORTHO05D006989 7.3e-59 231.1 168 66.7
SGA_v2.0_scaffold4G02011 Striga asiatica HOM05D005658 ORTHO05D006989 1.2e-58 230.3 166 66.3
BolC5t33780H Brassica oleracea HOM05D004680 ORTHO05D005939 2.1e-58 229.6 208 60.1
Lsat_1_v5_gn_5_131001 Lactuca sativa HOM05D000012 ORTHO05D000804 2.1e-58 229.6 168 68.5
EL10Ac9g22053 Beta vulgaris HOM05D005658 ORTHO05D006989 3.6e-58 228.8 190 61.6
Phvul.010G147800 Phaseolus vulgaris HOM05D005658 ORTHO05D006989 4.7e-58 228.4 196 59.2
Ca_20421_v3 Cicer arietinum L. HOM05D005658 ORTHO05D006989 6.2e-58 228.0 172 65.7
FAN02G2498 Fragaria x ananassa HOM05D005658 ORTHO05D006989 8.1e-58 227.6 196 59.7
Actinidia08995 Actinidia chinensis HOM05D005658 ORTHO05D006989 1.1e-57 227.3 193 59.1
Gohir.A02G119700 Gossypium hirsutum HOM05D005658 ORTHO05D006989 1.1e-57 227.3 192 59.9
Medtr4g011330 Medicago truncatula HOM05D005658 ORTHO05D006989 1.4e-57 226.9 167 68.3
PSO210G2136 Papaver somniferum HOM05D005658 ORTHO05D006989 2.4e-57 226.1 196 58.7
Migut.D01013 Erythranthe guttata HOM05D005658 ORTHO05D006989 4.0e-57 225.3 176 61.4
Sabra03G0027300 Salix brachista HOM05D005658 ORTHO05D006989 6.8e-57 224.6 172 65.7
Migut.D01014 Erythranthe guttata HOM05D005658 ORTHO05D006989 8.9e-57 224.2 184 60.3
Lj9A509T93 Lonicera japonica HOM05D005658 ORTHO05D006989 1.5e-56 223.4 163 65.6
Oeu029646.1 Olea europaea HOM05D005658 ORTHO05D006989 1.5e-56 223.4 167 65.3
CSS0031663 Camellia sinensis var. sinensis HOM05D005658 ORTHO05D006989 2.0e-56 223.0 186 59.1
RcHm_v2.0_Chr2g0139241 Rosa chinensis HOM05D005658 ORTHO05D006989 2.0e-56 223.0 190 61.1
COL.COLO4_30455 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.6e-56 222.6 190 58.9
arahy.Tifrunner.gnm1.ann1.JS39C6 Arachis hypogaea HOM05D005658 ORTHO05D006989 5.8e-56 221.5 185 60.5
MBI04_g04855_MAGBIO Magnolia biondii HOM05D005658 ORTHO05D006989 2.9e-55 219.2 188 58.0
vmacro16973 Vaccinium macrocarpon HOM05D005658 ORTHO05D006989 4.9e-55 218.4 179 62.6
HPP92_003927 Vanilla planifolia HOM05D005658 ORTHO05D006989 4.9e-55 218.4 176 61.9
Os02g0276400 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.1e-54 217.2 187 60.4
Nitab4.5_0001968g0140 Nicotiana tabacum HOM05D005658 ORTHO05D006989 5.4e-54 214.9 183 61.7
Gohir.D03G066800 Gossypium hirsutum HOM05D005658 ORTHO05D006989 7.1e-54 214.5 172 63.4
PSO210G3060 Papaver somniferum HOM05D005658 ORTHO05D006989 7.1e-54 214.5 189 59.8
Dinv38010 Davidia involucrata HOM05D005658 ORTHO05D006989 1.2e-53 213.8 167 62.3
Sed0018991 Sechium edule HOM05D005658 ORTHO05D006989 1.6e-53 213.4 133 77.4
Carub.0003s1594 Capsella rubella HOM05D005658 ORTHO05D006989 3.5e-53 212.2 171 62.0
COL.COLO4_18473 Corchorus olitorius HOM05D005658 ORTHO05D006989 7.8e-53 211.1 191 59.7
PSO063G2380 Papaver somniferum HOM05D005658 ORTHO05D006989 2.3e-52 209.5 196 56.6
AUR62011683 Chenopodium quinoa HOM05D005658 ORTHO05D006989 3.0e-52 209.1 172 62.8
Aa31LG8G3340 Aethionema arabicum HOM05D004680 ORTHO05D005939 8.7e-52 207.6 187 57.2
Rhsim12G0201100 Rhododendron simsii HOM05D005658 ORTHO05D006989 8.7e-52 207.6 168 61.3
Ah.01g021740 Amaranthus hybridus HOM05D005658 ORTHO05D006989 3.3e-51 205.7 172 62.8
FAN05G4480 Fragaria x ananassa HOM05D005658 ORTHO05D006989 9.6e-51 204.1 169 62.1
COL.COLO4_30457 Corchorus olitorius HOM05D005658 ORTHO05D006989 2.8e-50 202.6 161 65.8
Sc12g0009500 Simmondsia chinensis HOM05D005658 ORTHO05D006989 2.8e-50 202.6 174 58.0
Ciclev10026617m.g Citrus clementina HOM05D005658 ORTHO05D006989 6.2e-50 201.4 161 59.6
AUR62016509 Chenopodium quinoa HOM05D005658 ORTHO05D006989 1.4e-49 200.3 172 59.9
Os02g0276200 Oryza sativa ssp. japonica HOM05D005658 ORTHO05D006989 1.8e-49 199.9 177 58.2
SMO147G0229 Selaginella moellendorffii HOM05D005658 ORTHO05D006989 5.3e-49 198.4 192 53.6
Mapoly0052s0007 Marchantia polymorpha HOM05D005658 ORTHO05D006989 6.9e-49 198.0 183 54.6
Psat7g255080 Pisum sativum HOM05D005658 ORTHO05D006989 1.3e-47 193.7 142 66.2
AUR62016508 Chenopodium quinoa HOM05D005658 ORTHO05D006989 6.4e-47 191.4 189 56.1
TPR.G40810 Trifolium pratense HOM05D005658 ORTHO05D006989 2.4e-46 189.5 142 65.5
Pp3c13_4590 Physcomitrium patens HOM05D005658 ORTHO05D006989 3.5e-45 185.7 183 52.5
AagrBONN_evm.TU.Sc2ySwM_369.407 Anthoceros agrestis HOM05D002948 ORTHO05D003577 7.8e-45 184.5 175 55.4
Haze_16345 Corylus avellana HOM05D003600 ORTHO05D004129 1.7e-44 183.3 131 68.7
Peaxi162Scf00015g00132 Petunia axillaris HOM05D005658 ORTHO05D006989 1.7e-44 183.3 185 51.9
CBR_g48432 Chara braunii HOM05D005658 ORTHO05D006989 3.3e-43 179.1 188 50.0
Cpa.g.sc1241.2 Carica papaya HOM05D005658 ORTHO05D006989 4.0e-41 172.2 133 64.7
Psat5g078240 Pisum sativum HOM05D005658 ORTHO05D006989 5.3e-41 171.8 196 46.4
Nitab4.5_0003039g0010 Nicotiana tabacum HOM05D005658 ORTHO05D006989 9.0e-41 171.0 156 59.0
Atru.chr1.3413 Acer truncatum HOM05D005658 ORTHO05D006989 2.4e-38 162.9 120 67.5
AUR62011684 Chenopodium quinoa HOM05D005658 ORTHO05D006989 2.7e-37 159.5 134 61.2
Cre16.g674650 Chlamydomonas reinhardtii HOM05D005658 ORTHO05D006989 1.3e-36 157.1 183 44.8
Glyma.08G203700 Glycine max HOM05D005658 ORTHO05D006989 4.3e-35 152.1 118 62.7
Peaxi162Scf00015g00131 Petunia axillaris HOM05D005658 ORTHO05D006989 9.0e-33 144.4 185 44.3
Manes.11G037100 Manihot esculenta HOM05D005658 ORTHO05D006989 2.8e-26 122.9 178 44.4
CAN.G214.3 Capsicum annuum HOM05D005658 ORTHO05D006989 1.9e-22 110.2 137 46.7
QL02p037511 Quercus lobata HOM05D005658 ORTHO05D006989 7.2e-14 81.6 60 66.7
Cre10.g448500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 2.8e-10 69.7 192 29.7
MCO09G426 Micromonas commoda HOM05D006499 ORTHO05D007874 2.8e-10 69.7 168 30.4
Peaxi162Scf00021g01915 Petunia axillaris HOM05D006499 ORTHO05D007874 3.7e-10 69.3 177 26.6
HPP92_005057 Vanilla planifolia HOM05D006499 ORTHO05D007874 1.1e-09 67.8 172 28.5
CiPaw.06G061000 Carya illinoinensis HOM05D006499 ORTHO05D007874 2.4e-09 66.6 176 29.5
Nitab4.5_0004301g0030 Nicotiana tabacum HOM05D006499 ORTHO05D007874 2.4e-09 66.6 177 26.0
PGSC0003DMG400016411 Solanum tuberosum HOM05D006499 ORTHO05D007874 5.3e-09 65.5 177 26.0
MBI06_g20294_MAGBIO Magnolia biondii HOM05D006499 ORTHO05D007874 9.1e-09 64.7 179 27.9
Sopen01g003460 Solanum pennellii HOM05D006499 ORTHO05D007874 9.1e-09 64.7 177 26.6
Lj2g0027544 Lotus japonicus HOM05D006499 ORTHO05D007874 2.0e-08 63.5 177 28.8
Solyc01g007920.2 Solanum lycopersicum HOM05D006499 ORTHO05D007874 2.0e-08 63.5 177 26.0
Phvul.003G004400 Phaseolus vulgaris HOM05D006499 ORTHO05D007874 3.4e-08 62.8 176 26.7
Cfa026003 Carpinus fangiana HOM05D006499 ORTHO05D007874 1.7e-07 60.5 148 31.8
Haze_11761 Corylus avellana HOM05D006499 ORTHO05D007874 2.2e-07 60.1 179 27.4
TPR.G1351 Trifolium pratense HOM05D005658 ORTHO05D006989 2.9e-07 59.7 53 49.1
Cfa008745 Carpinus fangiana HOM05D006499 ORTHO05D007874 3.8e-07 59.3 180 27.8
Zm00001eb076800 Zea mays HOM05D006499 ORTHO05D007874 6.5e-07 58.5 177 29.9
Ca_29435_v3 Cicer arietinum L. HOM05D006499 ORTHO05D007874 8.5e-07 58.2 170 26.5
Cre06.g305500 Chlamydomonas reinhardtii HOM05D006499 ORTHO05D007874 1.1e-06 57.8 82 41.5
COL.COLO4_33044 Corchorus olitorius HOM05D006499 ORTHO05D007874 1.9e-06 57.0 181 28.2
Manes.15G079500 Manihot esculenta HOM05D006499 ORTHO05D007874 2.5e-06 56.6 177 27.1
Atru.chr1.3414 Acer truncatum HOM05D005658 ORTHO05D006989 3.2e-06 56.2 50 56.0
MCO13G030 Micromonas commoda HOM05D006499 ORTHO05D007874 3.2e-06 56.2 174 27.6
AL6G34450 Arabidopsis lyrata HOM05D006499 ORTHO05D007874 4.2e-06 55.8 180 26.7
MELO3C035027.2 Cucumis melo HOM05D005658 ORTHO05D006989 5.5e-06 55.5 105 36.2
MCO09G247 Micromonas commoda HOM05D006499 ORTHO05D007874 7.2e-06 55.1 169 29.0


User provided reference genes

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