Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000786 Sechium edule HOM05D005661 ORTHO05D007997 2.8e-146 521.9 266 100.0
CsaV3_3G006740 Cucumis sativus L. HOM05D005661 ORTHO05D007997 3.7e-114 415.2 256 82.4
ClCG10G007530 Citrullus lanatus HOM05D005661 ORTHO05D007997 1.3e-111 406.8 290 73.4
MELO3C016431.2 Cucumis melo HOM05D005661 ORTHO05D007997 1.2e-88 330.5 183 89.6
Gohir.D06G117100 Gossypium hirsutum HOM05D005661 ORTHO05D007997 3.5e-88 328.9 240 71.2
Gorai.010G134700 Gossypium raimondii HOM05D005661 ORTHO05D007997 3.5e-88 328.9 242 71.5
Gohir.A06G112500 Gossypium hirsutum HOM05D005661 ORTHO05D007997 6.6e-87 324.7 242 71.1
GSVIVG01023131001 Vitis vinifera HOM05D005661 ORTHO05D007997 3.3e-86 322.4 257 67.3
Dinv38445 Davidia involucrata HOM05D005661 ORTHO05D007997 7.3e-86 321.2 265 66.0
Thecc.06G064100 Theobroma cacao HOM05D005661 ORTHO05D007997 2.1e-85 319.7 254 67.7
Oeu000159.1 Olea europaea HOM05D005661 ORTHO05D007997 2.8e-85 319.3 251 68.9
Manes.14G166900 Manihot esculenta HOM05D005661 ORTHO05D007997 1.1e-84 317.4 247 66.8
CSS0021874 Camellia sinensis var. sinensis HOM05D005661 ORTHO05D007997 4.0e-84 315.5 238 69.7
Manes.14G146200 Manihot esculenta HOM05D005661 ORTHO05D007997 5.2e-84 315.1 260 64.6
HanXRQChr05g0153021 Helianthus annuus HOM05D005661 ORTHO05D007997 6.8e-84 314.7 242 70.7
Aqoxy1G02010 Aquilegia oxysepala HOM05D005661 ORTHO05D007997 2.0e-83 313.2 182 84.6
Cpa.g.sc173.2 Carica papaya HOM05D005661 ORTHO05D007997 1.7e-82 310.1 205 78.0
Migut.B00706 Erythranthe guttata HOM05D005661 ORTHO05D007997 1.7e-82 310.1 259 65.6
Lsat_1_v5_gn_9_124861 Lactuca sativa HOM05D005661 ORTHO05D007997 2.2e-82 309.7 215 74.4
Potri.004G230200 Populus trichocarpa HOM05D005661 ORTHO05D007997 2.2e-82 309.7 251 66.5
TAR628G0241 Trochodendron aralioides HOM05D005661 ORTHO05D007997 2.2e-82 309.7 219 73.1
RcHm_v2.0_Chr7g0218881 Rosa chinensis HOM05D005661 ORTHO05D007997 2.9e-82 309.3 258 65.9
TWI23G0175 Tripterygium wilfordii HOM05D005661 ORTHO05D007997 2.9e-82 309.3 253 65.2
Ciclev10002035m.g Citrus clementina HOM05D005661 ORTHO05D007997 4.9e-82 308.5 208 74.0
Prupe.1G586600 Prunus persica HOM05D005661 ORTHO05D007997 4.9e-82 308.5 228 70.2
PGSC0003DMG401018218 Solanum tuberosum HOM05D005661 ORTHO05D007997 4.9e-82 308.5 256 66.0
Cfa004424 Carpinus fangiana HOM05D005661 ORTHO05D007997 6.4e-82 308.1 264 65.2
QL02p103676 Quercus lobata HOM05D005661 ORTHO05D007997 8.3e-82 307.8 209 75.6
Actinidia11729 Actinidia chinensis HOM05D005661 ORTHO05D007997 1.9e-81 306.6 258 65.5
Nitab4.5_0006159g0030 Nicotiana tabacum HOM05D005661 ORTHO05D007997 2.4e-81 306.2 220 71.4
Nitab4.5_0001085g0130 Nicotiana tabacum HOM05D005661 ORTHO05D007997 7.1e-81 304.7 184 81.5
Psat0s2555g0200 Pisum sativum HOM05D005661 ORTHO05D007997 7.1e-81 304.7 207 75.4
PSO210G4998 Papaver somniferum HOM05D005661 ORTHO05D007997 1.2e-80 303.9 180 84.4
Solyc01g102820.4 Solanum lycopersicum HOM05D005661 ORTHO05D007997 1.2e-80 303.9 256 63.7
Sopen01g045220 Solanum pennellii HOM05D005661 ORTHO05D007997 1.2e-80 303.9 256 63.7
CAN.G1379.8 Capsicum annuum HOM05D005661 ORTHO05D007997 2.1e-80 303.1 184 81.0
MD15G1444200 Malus domestica HOM05D005661 ORTHO05D007997 2.1e-80 303.1 218 72.5
FAN08G1685 Fragaria x ananassa HOM05D005661 ORTHO05D007997 2.7e-80 302.8 266 63.9
THA.LOC104801778 Tarenaya hassleriana HOM05D005661 ORTHO05D007997 3.5e-80 302.4 195 76.9
MSTRG.16459 Avicennia marina HOM05D005661 ORTHO05D007997 4.6e-80 302.0 205 74.6
FvH4_5g27480 Fragaria vesca HOM05D005661 ORTHO05D007997 1.0e-79 300.8 259 64.9
FAN04G2212 Fragaria x ananassa HOM05D005661 ORTHO05D007997 1.3e-79 300.4 181 82.3
MBI06_g17067_MAGBIO Magnolia biondii HOM05D005661 ORTHO05D007997 1.3e-79 300.4 260 62.7
Sc09g0007750 Simmondsia chinensis HOM05D005661 ORTHO05D007997 1.3e-79 300.4 216 69.9
Peaxi162Scf00194g01045 Petunia axillaris HOM05D005661 ORTHO05D007997 1.7e-79 300.1 184 80.4
CANSAT01G0358 Cannabis sativa HOM05D005661 ORTHO05D007997 3.0e-79 299.3 193 77.7
Glyma.17G002400 Glycine max HOM05D005661 ORTHO05D007997 3.0e-79 299.3 187 78.1
PGR142G1782 Punica granatum HOM05D005661 ORTHO05D007997 3.0e-79 299.3 205 74.6
Rhsim11G0115300 Rhododendron simsii HOM05D005661 ORTHO05D007997 3.0e-79 299.3 207 74.4
Nn5g27134 Nelumbo nucifera HOM05D005661 ORTHO05D007997 3.9e-79 298.9 207 72.5
TPR.G5996 Trifolium pratense HOM05D005661 ORTHO05D007997 5.1e-79 298.5 183 81.4
ECA246G0516 Erigeron canadensis HOM05D005661 ORTHO05D007997 8.6e-79 297.7 207 73.4
MSTRG.20341 Avicennia marina HOM05D005661 ORTHO05D007997 1.5e-78 297.0 251 64.1
CiPaw.06G177000 Carya illinoinensis HOM05D005661 ORTHO05D007997 1.5e-78 297.0 255 62.0
Cc02_g23630 Coffea canephora HOM05D005661 ORTHO05D007997 1.9e-78 296.6 267 63.3
MD08G1249400 Malus domestica HOM05D005661 ORTHO05D007997 3.3e-78 295.8 181 81.2
ATR1089G013 Amborella trichopoda HOM05D005661 ORTHO05D007997 4.3e-78 295.4 202 74.3
FAN13G1518 Fragaria x ananassa HOM05D005661 ORTHO05D007997 4.3e-78 295.4 181 81.2
Eucgr.I02806 Eucalyptus grandis HOM05D005661 ORTHO05D007997 2.8e-77 292.7 206 72.3
Lalb_Chr07g0176831 Lupinus albus HOM05D005661 ORTHO05D007997 3.6e-77 292.4 184 79.3
EL10Ac6g13962 Beta vulgaris HOM05D005661 ORTHO05D007997 8.1e-77 291.2 194 74.7
DCAR_031998 Daucus carota HOM05D005661 ORTHO05D007997 8.1e-77 291.2 251 62.5
CARHR145060 Cardamine hirsuta HOM05D005661 ORTHO05D007997 1.1e-76 290.8 196 75.0
Medtr4g134540 Medicago truncatula HOM05D005661 ORTHO05D007997 1.4e-76 290.4 184 78.3
AT2G02500 Arabidopsis thaliana HOM05D005661 ORTHO05D007997 4.0e-76 288.9 213 69.0
HPP92_003715 Vanilla planifolia HOM05D005661 ORTHO05D007997 5.2e-76 288.5 198 73.2
HPP92_003721 Vanilla planifolia HOM05D005661 ORTHO05D007997 5.2e-76 288.5 198 73.2
HanXRQChr09g0249911 Helianthus annuus HOM05D005661 ORTHO05D007997 6.8e-76 288.1 175 80.6
AUR62042241 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.5e-75 287.0 260 59.6
unitig_21.g20570 Utricularia gibba HOM05D005661 ORTHO05D007997 2.0e-75 286.6 255 63.1
Aa31LG2G7610 Aethionema arabicum HOM05D005661 ORTHO05D007997 2.6e-75 286.2 196 73.0
AL5G11770 Arabidopsis lyrata HOM05D005661 ORTHO05D007997 2.6e-75 286.2 196 72.4
Carub.0005s0153 Capsella rubella HOM05D005661 ORTHO05D007997 2.6e-75 286.2 196 73.0
Lj4g0018255 Lotus japonicus HOM05D005661 ORTHO05D007997 2.6e-75 286.2 258 62.0
Sp2g13750 Schrenkiella parvula HOM05D005661 ORTHO05D007997 4.4e-75 285.4 248 62.9
VMungo1215G1111 Vigna mungo HOM05D005661 ORTHO05D007997 4.4e-75 285.4 260 60.0
DCAR_001732 Daucus carota HOM05D005661 ORTHO05D007997 7.6e-75 284.6 252 62.3
Thhalv10004647m.g Eutrema salsugineum HOM05D005661 ORTHO05D007997 7.6e-75 284.6 249 63.9
BcaB07g30331 Brassica carinata HOM05D005661 ORTHO05D007997 9.9e-75 284.3 250 61.6
BraA02t08315Z Brassica rapa HOM05D005661 ORTHO05D007997 1.3e-74 283.9 196 71.4
BcaC03g17145 Brassica carinata HOM05D005661 ORTHO05D007997 1.7e-74 283.5 196 71.9
BolC2t11148H Brassica oleracea HOM05D005661 ORTHO05D007997 1.7e-74 283.5 196 71.4
Sabra01G0175500 Salix brachista HOM05D005661 ORTHO05D007997 2.2e-74 283.1 310 53.9
C02p50650 Brassica napus HOM05D005661 ORTHO05D007997 2.9e-74 282.7 196 71.4
SEGI_39309 Sequoiadendron giganteum HOM05D005661 ORTHO05D007997 4.9e-74 282.0 181 77.9
A02p32920 Brassica napus HOM05D005661 ORTHO05D007997 6.4e-74 281.6 196 70.9
Phvul.003G090900 Phaseolus vulgaris HOM05D005661 ORTHO05D007997 5.1e-71 271.9 261 58.6
AUR62032486 Chenopodium quinoa HOM05D005661 ORTHO05D007997 8.6e-71 271.2 241 61.0
Zm00001eb145390 Zea mays HOM05D005661 ORTHO05D007997 2.5e-70 269.6 208 67.3
Zm00001eb365960 Zea mays HOM05D005661 ORTHO05D007997 2.5e-70 269.6 205 67.8
COL.COLO4_31208 Corchorus olitorius HOM05D005661 ORTHO05D007997 1.2e-69 267.3 159 80.5
Dinv29650 Davidia involucrata HOM05D005661 ORTHO05D007997 4.7e-69 265.4 159 81.1
Pp3c15_1010 Physcomitrium patens HOM05D005661 ORTHO05D007997 1.4e-68 263.8 189 70.4
Mapoly0006s0146 Marchantia polymorpha HOM05D005661 ORTHO05D007997 1.8e-68 263.5 182 73.6
Ca_13523_v3 Cicer arietinum L. HOM05D005661 ORTHO05D007997 2.0e-67 260.0 162 79.6
Pp3c9_590 Physcomitrium patens HOM05D005661 ORTHO05D007997 3.4e-67 259.2 178 71.9
Haze_09964 Corylus avellana HOM05D005661 ORTHO05D007997 1.3e-66 257.3 248 58.5
SMO367G1090 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 1.3e-66 257.3 181 71.8
Atru.chr6.139 Acer truncatum HOM05D005661 ORTHO05D007997 9.3e-65 251.1 211 64.9
arahy.Tifrunner.gnm1.ann1.PPAS6H Arachis hypogaea HOM05D005661 ORTHO05D007997 2.1e-64 250.0 212 61.8
Ah.02g128470 Amaranthus hybridus HOM05D005661 ORTHO05D007997 3.0e-63 246.1 218 60.1
arahy.Tifrunner.gnm1.ann1.FQN863 Arachis hypogaea HOM05D005661 ORTHO05D007997 1.5e-62 243.8 181 70.2
Actinidia00142 Actinidia chinensis HOM05D005661 ORTHO05D007997 3.3e-62 242.7 222 59.0
SGA_v2.0_scaffold131G34439 Striga asiatica HOM05D005661 ORTHO05D007997 1.1e-60 237.7 230 59.6
vmacro01624 Vaccinium macrocarpon HOM05D005661 ORTHO05D007997 5.3e-60 235.3 269 53.9
CDE02G0980 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 1.9e-57 226.9 222 55.9
CBR_g214 Chara braunii HOM05D005661 ORTHO05D007997 1.0e-55 221.1 183 60.1
MCO15G500 Micromonas commoda HOM05D005661 ORTHO05D007997 3.0e-55 219.5 210 56.7
Cre16.g679669 Chlamydomonas reinhardtii HOM05D005661 ORTHO05D007997 2.2e-50 203.4 198 55.6
CDE04G2298 Ceratophyllum demersum HOM05D005661 ORTHO05D007997 3.8e-50 202.6 225 52.9
Lj5A292T55 Lonicera japonica HOM05D005661 ORTHO05D007997 2.1e-48 196.8 123 77.2
Os01g0887100 Oryza sativa ssp. japonica HOM05D005661 ORTHO05D007997 3.3e-46 189.5 127 71.7
Hund15335 Selenicereus undatus HOM05D005661 ORTHO05D007997 2.6e-43 179.9 162 58.6
AagrBONN_evm.TU.Sc2ySwM_362.430 Anthoceros agrestis HOM05D005661 ORTHO05D007997 2.7e-40 169.9 159 59.1
arahy.Tifrunner.gnm1.ann1.H0NKK3 Arachis hypogaea HOM05D005661 ORTHO05D007997 3.9e-39 166.0 143 62.2
HanXRQChr03g0069601 Helianthus annuus HOM05D005661 ORTHO05D007997 6.7e-39 165.2 104 76.0
AUR62030219 Chenopodium quinoa HOM05D005661 ORTHO05D007997 1.5e-35 154.1 116 64.7
Lj5A292T53 Lonicera japonica HOM05D005661 ORTHO05D007997 8.5e-34 148.3 94 77.7
FvH4_5g27493 Fragaria vesca HOM05D005661 ORTHO05D007997 1.4e-28 131.0 259 40.9
VMungo1364G0001 Vigna mungo HOM05D005661 ORTHO05D005421 2.5e-25 120.2 146 45.9
FAN08G3692 Fragaria x ananassa HOM05D005661 ORTHO05D208506 5.1e-23 112.5 180 46.1
FAN08G1519 Fragaria x ananassa HOM05D005661 ORTHO05D210776 7.4e-22 108.6 114 58.8
HanXRQChr14g0444001 Helianthus annuus HOM05D005661 ORTHO05D007997 3.6e-16 89.7 61 65.6
CAN.G242.16 Capsicum annuum HOM05D005661 ORTHO05D007997 6.1e-16 89.0 56 69.6
Lj5A292T54 Lonicera japonica HOM05D005661 ORTHO05D007997 1.3e-13 81.3 46 78.3
Ca_21047_v3 Cicer arietinum L. HOM05D005661 ORTHO05D147477 3.1e-12 76.6 190 35.3
FvH4_5g27491 Fragaria vesca HOM05D005661 ORTHO05D046262 1.3e-10 71.2 79 53.2
Ca_29126_v3 Cicer arietinum L. HOM05D005661 ORTHO05D148461 5.0e-10 69.3 169 31.4
SMO367G1054 Selaginella moellendorffii HOM05D005661 ORTHO05D007997 4.2e-09 66.2 112 41.1
FAN08G0833 Fragaria x ananassa HOM05D005661 ORTHO05D203111 6.1e-08 62.4 60 63.3


User provided reference genes

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