Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000784 Sechium edule HOM05D004992 ORTHO05D006004 9.0e-56 219.9 105 100.0
ClCG01G022080 Citrullus lanatus HOM05D004992 ORTHO05D006004 5.0e-38 161.0 109 73.4
MELO3C007381.2 Cucumis melo HOM05D004992 ORTHO05D006004 4.7e-36 154.5 107 72.9
CsaV3_6G049140 Cucumis sativus L. HOM05D004992 ORTHO05D006004 8.5e-30 133.7 90 72.2
Cfa000249 Carpinus fangiana HOM05D004992 ORTHO05D006004 2.1e-28 129.0 110 56.4
Haze_06774 Corylus avellana HOM05D003428 ORTHO05D004131 8.0e-28 127.1 110 55.5
RcHm_v2.0_Chr5g0003701 Rosa chinensis HOM05D004992 ORTHO05D006004 1.8e-27 125.9 114 53.5
FvH4_3g02450 Fragaria vesca HOM05D004992 ORTHO05D006004 2.0e-26 122.5 115 52.2
FAN21G0406 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.6e-26 122.1 115 52.2
Phvul.006G151000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.4e-26 121.3 110 50.9
Prupe.4G023900 Prunus persica HOM05D004992 ORTHO05D006004 5.7e-26 120.9 118 53.4
CiPaw.09G089400 Carya illinoinensis HOM05D004992 ORTHO05D006004 1.7e-25 119.4 108 52.8
Potri.004G018600 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.7e-25 119.4 106 54.7
FAN25G3450 Fragaria x ananassa HOM05D004992 ORTHO05D006004 2.2e-25 119.0 113 52.2
Manes.17G037200 Manihot esculenta HOM05D004992 ORTHO05D006004 2.8e-25 118.6 109 54.1
Sabra04G0010400 Salix brachista HOM05D003428 ORTHO05D004131 2.8e-25 118.6 106 53.8
VMungo0540G0931 Vigna mungo HOM05D004992 ORTHO05D006004 2.8e-25 118.6 110 50.9
QL05p074036 Quercus lobata HOM05D004992 ORTHO05D006004 3.7e-25 118.2 103 53.4
Duzib192G0598 Durio zibethinus HOM05D004992 ORTHO05D006004 4.8e-25 117.9 113 54.0
Gohir.A06G147400 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-24 116.7 113 51.3
Gohir.D06G153200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.4e-24 116.3 113 51.3
Gorai.010G179200 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.4e-24 116.3 113 51.3
Duzib235G0746 Durio zibethinus HOM05D004992 ORTHO05D006004 4.1e-24 114.8 115 52.2
Dinv13873 Davidia involucrata HOM05D004992 ORTHO05D006004 9.1e-24 113.6 112 50.0
Glyma.07G259100 Glycine max HOM05D004992 ORTHO05D006004 9.1e-24 113.6 115 50.4
Glyma.17G015100 Glycine max HOM05D004992 ORTHO05D006004 1.2e-23 113.2 115 49.6
Thecc.06G217500 Theobroma cacao HOM05D004992 ORTHO05D006004 1.6e-23 112.8 113 51.3
GSVIVG01012656001 Vitis vinifera HOM05D004992 ORTHO05D006004 1.6e-23 112.8 112 50.9
CiPaw.10G069500 Carya illinoinensis HOM05D004992 ORTHO05D006004 2.0e-23 112.5 108 50.9
COL.COLO4_31744 Corchorus olitorius HOM05D004992 ORTHO05D006004 2.7e-23 112.1 114 51.8
TWI38G1979 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.7e-23 112.1 113 51.3
Cpa.g.sc198.27 Carica papaya HOM05D004992 ORTHO05D006004 3.5e-23 111.7 110 50.9
Ciclev10016836m.g Citrus clementina HOM05D004992 ORTHO05D006004 3.5e-23 111.7 114 50.9
VMungo1215G1625 Vigna mungo HOM05D004992 ORTHO05D006004 3.5e-23 111.7 105 50.5
Glyma.13G206400 Glycine max HOM05D004992 ORTHO05D006004 4.5e-23 111.3 113 49.6
Potri.011G000400 Populus trichocarpa HOM05D004992 ORTHO05D006004 7.7e-23 110.5 113 47.8
CSS0017416 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 1.3e-22 109.8 121 45.5
Medtr2g022820 Medicago truncatula HOM05D004992 ORTHO05D006004 1.3e-22 109.8 107 50.5
Lj4g0012462 Lotus japonicus HOM05D004992 ORTHO05D006004 2.2e-22 109.0 105 51.4
Lalb_Chr18g0056231 Lupinus albus HOM05D004992 ORTHO05D006004 2.9e-22 108.6 121 45.5
Phvul.003G077200 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 2.9e-22 108.6 115 47.0
TWI38G1613 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 2.9e-22 108.6 113 48.7
MD10G1317900 Malus domestica HOM05D004992 ORTHO05D006004 6.5e-22 107.5 124 44.4
Sed0007059 Sechium edule HOM05D004992 ORTHO05D006004 1.1e-21 106.7 113 48.7
TPR.G7639 Trifolium pratense HOM05D004992 ORTHO05D006004 1.5e-21 106.3 112 48.2
arahy.Tifrunner.gnm1.ann1.PC5S43 Arachis hypogaea HOM05D004992 ORTHO05D006004 3.2e-21 105.1 108 48.1
Nitab4.5_0010096g0060 Nicotiana tabacum HOM05D004992 ORTHO05D006004 2.1e-20 102.4 111 50.5
arahy.Tifrunner.gnm1.ann1.T879FL Arachis hypogaea HOM05D004992 ORTHO05D006004 2.7e-20 102.1 108 47.2
Manes.16G010000 Manihot esculenta HOM05D004992 ORTHO05D006004 3.6e-20 101.7 108 50.9
arahy.Tifrunner.gnm1.ann1.9Z1Z9Z Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-19 99.8 109 46.8
arahy.Tifrunner.gnm1.ann1.FJ4Y8F Arachis hypogaea HOM05D004992 ORTHO05D006004 1.4e-19 99.8 109 46.8
arahy.Tifrunner.gnm1.ann1.Z4K8V6 Arachis hypogaea HOM05D004992 ORTHO05D006004 1.8e-19 99.4 108 46.3
CANSAT56G2390 Cannabis sativa HOM05D004992 ORTHO05D006004 2.3e-19 99.0 123 43.1
ClCG03G004870 Citrullus lanatus HOM05D004992 ORTHO05D006004 2.3e-19 99.0 106 44.3
MELO3C002469.2 Cucumis melo HOM05D004992 ORTHO05D006004 3.0e-19 98.6 112 42.9
CsaV3_1G010900 Cucumis sativus L. HOM05D004992 ORTHO05D006004 6.8e-19 97.4 107 44.9
Ca_00623_v3 Cicer arietinum L. HOM05D004992 ORTHO05D006004 1.2e-18 96.7 118 44.1
CSS0025190 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.0e-18 95.9 112 43.8
CSS0030561 Camellia sinensis var. sinensis HOM05D004992 ORTHO05D006004 2.0e-18 95.9 112 43.8
Sed0003497 Sechium edule HOM05D004992 ORTHO05D006004 4.4e-18 94.7 103 57.3
Sopen02g025060 Solanum pennellii HOM05D004992 ORTHO05D006004 1.3e-17 93.2 112 45.5
PGSC0003DMG400016488 Solanum tuberosum HOM05D004992 ORTHO05D006004 1.3e-17 93.2 113 45.1
Solyc02g080360.1 Solanum lycopersicum HOM05D004992 ORTHO05D006004 2.2e-17 92.4 112 45.5
Hma1.2p1_0091F.1_g046260 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 4.8e-17 91.3 111 43.2
Cc09_g01920 Coffea canephora HOM05D004992 ORTHO05D006004 1.4e-16 89.7 110 44.5
Oeu051218.1 Olea europaea HOM05D004992 ORTHO05D006004 3.1e-16 88.6 107 46.7
Medtr4g131880 Medicago truncatula HOM05D004992 ORTHO05D006004 5.4e-16 87.8 110 48.2
Peaxi162Scf00262g00051 Petunia axillaris HOM05D004992 ORTHO05D006004 2.0e-15 85.9 112 46.4
TAR624G0245 Trochodendron aralioides HOM05D004992 ORTHO05D006004 2.7e-15 85.5 106 48.1
TPR.G37097 Trifolium pratense HOM05D004992 ORTHO05D006004 3.5e-15 85.1 103 43.7
Nn1g07103 Nelumbo nucifera HOM05D004992 ORTHO05D006004 5.9e-15 84.3 108 42.6
AL7G32150 Arabidopsis lyrata HOM05D004992 ORTHO05D006004 7.7e-15 84.0 109 44.0
AT4G21780 Arabidopsis thaliana HOM05D004992 ORTHO05D006004 2.2e-14 82.4 108 43.5
Eucgr.D01305 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.8e-14 81.6 100 44.0
Eucgr.L03501 Eucalyptus grandis HOM05D004992 ORTHO05D006004 3.8e-14 81.6 100 44.0
TPR.G37044 Trifolium pratense HOM05D004992 ORTHO05D006004 5.0e-14 81.3 103 42.7
Prupe.4G209300 Prunus persica HOM05D004992 ORTHO05D006004 6.5e-14 80.9 111 45.0
Eucgr.E04090 Eucalyptus grandis HOM05D004992 ORTHO05D006004 8.5e-14 80.5 106 42.5
EL10Ac8g20021 Beta vulgaris HOM05D004992 ORTHO05D006004 1.5e-13 79.7 126 38.1
PGR042G3122 Punica granatum HOM05D004992 ORTHO05D006004 1.5e-13 79.7 112 40.2
Lsat_1_v5_gn_7_17380 Lactuca sativa HOM05D004992 ORTHO05D006004 1.9e-13 79.3 122 40.2
THA.LOC104806295 Tarenaya hassleriana HOM05D004992 ORTHO05D006004 1.9e-13 79.3 102 44.1
Sc17g0007220 Simmondsia chinensis HOM05D004992 ORTHO05D006004 2.5e-13 79.0 140 36.4
Hma1.2p1_0813F.1_g222590 Hydrangea macrophylla HOM05D004992 ORTHO05D006004 3.2e-13 78.6 109 44.0
CARHR228520 Cardamine hirsuta HOM05D004992 ORTHO05D006004 5.5e-13 77.8 109 41.3
Gorai.002G086600 Gossypium raimondii HOM05D004992 ORTHO05D006004 5.5e-13 77.8 100 46.0
Thecc.07G043900 Theobroma cacao HOM05D004992 ORTHO05D006004 7.2e-13 77.4 113 43.4
BcaNung02246 Brassica carinata HOM05D004992 ORTHO05D006004 9.5e-13 77.0 106 42.5
Gohir.A01G077800 Gossypium hirsutum HOM05D004992 ORTHO05D006004 9.5e-13 77.0 100 46.0
Duzib268G1102 Durio zibethinus HOM05D004992 ORTHO05D006004 1.6e-12 76.3 107 43.9
Manes.03G126800 Manihot esculenta HOM05D004992 ORTHO05D006004 1.6e-12 76.3 113 39.8
Sed0025492 Sechium edule HOM05D004992 ORTHO05D006004 1.6e-12 76.3 112 38.4
Thhalv10027254m.g Eutrema salsugineum HOM05D004992 ORTHO05D006004 2.7e-12 75.5 105 41.0
Nitab4.5_0010096g0020 Nicotiana tabacum HOM05D000001 ORTHO05D009485 2.7e-12 75.5 112 43.8
Ah.09g235060 Amaranthus hybridus HOM05D004992 ORTHO05D006004 3.6e-12 75.1 131 39.7
Migut.M01784 Erythranthe guttata HOM05D004992 ORTHO05D006004 4.7e-12 74.7 94 43.6
TPR.G29123 Trifolium pratense HOM05D004992 ORTHO05D006004 1.0e-11 73.6 104 36.5
Ciclev10009906m.g Citrus clementina HOM05D004992 ORTHO05D006004 1.4e-11 73.2 106 41.5
Peaxi162Scf00203g00113 Petunia axillaris HOM05D004992 ORTHO05D006004 1.4e-11 73.2 99 44.4
Potri.001G421100 Populus trichocarpa HOM05D004992 ORTHO05D006004 1.4e-11 73.2 107 43.9
SGA_v2.0_scaffold7G03870 Striga asiatica HOM05D004992 ORTHO05D006004 1.4e-11 73.2 112 40.2
Lalb_Chr17g0348391 Lupinus albus HOM05D004992 ORTHO05D006004 1.8e-11 72.8 108 37.0
Eucgr.F03448 Eucalyptus grandis HOM05D004992 ORTHO05D006004 2.3e-11 72.4 103 39.8
Carub.0007s1962 Capsella rubella HOM05D004992 ORTHO05D006004 4.0e-11 71.6 110 41.8
MBI18_g24808_MAGBIO Magnolia biondii HOM05D004992 ORTHO05D006004 8.8e-11 70.5 106 39.6
Phvul.006G038900 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 1.5e-10 69.7 101 36.6
Glyma.18G101800 Glycine max HOM05D004992 ORTHO05D006004 2.6e-10 68.9 110 33.6
Rhsim06G0215300 Rhododendron simsii HOM05D004992 ORTHO05D006004 2.6e-10 68.9 100 41.0
Migut.M01366 Erythranthe guttata HOM05D004992 ORTHO05D006004 5.7e-10 67.8 104 41.3
TWI38G2258 Tripterygium wilfordii HOM05D004992 ORTHO05D006004 5.7e-10 67.8 101 37.6
arahy.Tifrunner.gnm1.ann1.R1VD00 Arachis hypogaea HOM05D004992 ORTHO05D006004 7.5e-10 67.4 110 36.4
BraA01t01254Z Brassica rapa HOM05D004992 ORTHO05D006004 7.5e-10 67.4 109 38.5
Phvul.008G265000 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 9.8e-10 67.0 102 34.3
Potri.011G136500 Populus trichocarpa HOM05D004992 ORTHO05D006004 9.8e-10 67.0 106 42.5
BcaC09g51203 Brassica carinata HOM05D004992 ORTHO05D006004 1.7e-09 66.2 109 38.5
C01p15800 Brassica napus HOM05D004992 ORTHO05D006004 1.7e-09 66.2 109 38.5
BolC1t01533H Brassica oleracea HOM05D004992 ORTHO05D006004 1.7e-09 66.2 109 38.5
Oeu037355.1 Olea europaea HOM05D004992 ORTHO05D006004 1.7e-09 66.2 107 40.2
Sp7g19950 Schrenkiella parvula HOM05D004992 ORTHO05D006004 1.7e-09 66.2 108 38.0
A01p13110 Brassica napus HOM05D004992 ORTHO05D006004 2.8e-09 65.5 108 38.0
PSO675G1893 Papaver somniferum HOM05D004992 ORTHO05D006004 2.8e-09 65.5 102 37.3
arahy.Tifrunner.gnm1.ann1.WBSQ2D Arachis hypogaea HOM05D004992 ORTHO05D006004 3.7e-09 65.1 110 35.5
Phvul.008G265500 Phaseolus vulgaris HOM05D004992 ORTHO05D006004 4.9e-09 64.7 105 33.3
Glyma.14G025500 Glycine max HOM05D004992 ORTHO05D006004 6.3e-09 64.3 104 34.6
Gohir.D05G366700 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.1e-08 63.5 107 43.0
Gorai.009G425100 Gossypium raimondii HOM05D004992 ORTHO05D006004 1.1e-08 63.5 107 43.0
Lsat_1_v5_gn_9_94121 Lactuca sativa HOM05D004992 ORTHO05D006004 1.8e-08 62.8 101 33.7
Aa31LG6G3760 Aethionema arabicum HOM05D004992 ORTHO05D006004 2.4e-08 62.4 115 37.4
MSTRG.12965 Avicennia marina HOM05D004992 ORTHO05D006004 4.1e-08 61.6 87 41.4
Manes.15G073800 Manihot esculenta HOM05D004992 ORTHO05D006004 4.1e-08 61.6 118 33.1
Rhsim04G0000900 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.1e-08 61.6 104 37.5
Rhsim04G0002000 Rhododendron simsii HOM05D004992 ORTHO05D006004 4.1e-08 61.6 104 37.5
Glyma.02G289600 Glycine max HOM05D004992 ORTHO05D006004 5.4e-08 61.2 109 33.0
unitig_62.g23278 Utricularia gibba HOM05D004992 ORTHO05D006004 7.0e-08 60.8 95 37.9
Sabra11G0122600 Salix brachista HOM05D004992 ORTHO05D006004 9.2e-08 60.5 100 37.0
ATR0752G182 Amborella trichopoda HOM05D004992 ORTHO05D006004 1.6e-07 59.7 97 38.1
Gohir.A04G019200 Gossypium hirsutum HOM05D004992 ORTHO05D006004 1.6e-07 59.7 99 41.4
Sc16g0006270 Simmondsia chinensis HOM05D004992 ORTHO05D006004 1.6e-07 59.7 100 35.0
DCAR_022550 Daucus carota HOM05D004992 ORTHO05D006004 2.0e-07 59.3 109 36.7
CANSAT21G1815 Cannabis sativa HOM05D004992 ORTHO05D006004 2.7e-07 58.9 110 34.5
GSVIVG01002002001 Vitis vinifera HOM05D004992 ORTHO05D006004 3.5e-07 58.5 105 38.1
Atru.chr10.2180 Acer truncatum HOM05D004992 ORTHO05D006004 4.5e-07 58.2 73 45.2


User provided reference genes

Program Settings