Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000759 Sechium edule HOM05D004143 ORTHO05D004816 6.7e-276 953.4 470 100.0
ClCG10G008670 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.5e-224 781.2 460 83.7
CsaV3_4G009000 Cucumis sativus L. HOM05D004143 ORTHO05D004816 5.2e-220 767.7 443 84.9
MELO3C018979.2 Cucumis melo HOM05D004143 ORTHO05D004816 2.6e-219 765.4 463 82.3
CsaV3_4G009010 Cucumis sativus L. HOM05D004143 ORTHO05D004816 2.9e-218 761.9 446 84.3
Sed0008601 Sechium edule HOM05D004143 ORTHO05D004816 1.8e-217 759.2 444 83.3
MELO3C018981.2 Cucumis melo HOM05D004143 ORTHO05D004816 7.0e-217 757.3 447 83.4
TAR375G1015 Trochodendron aralioides HOM05D004143 ORTHO05D004816 4.0e-204 714.9 444 76.8
PGR142G3661 Punica granatum HOM05D004143 ORTHO05D004816 1.2e-203 713.4 444 77.5
ClCG10G008690 Citrullus lanatus HOM05D004143 ORTHO05D004816 3.7e-202 708.4 410 85.1
Cfa016134 Carpinus fangiana HOM05D004143 ORTHO05D004816 1.1e-201 706.8 444 77.0
Thecc.05G121800 Theobroma cacao HOM05D004143 ORTHO05D004816 1.9e-201 706.1 447 76.5
CSS0027564 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 2.4e-201 705.7 445 76.2
TAR629G3485 Trochodendron aralioides HOM05D004143 ORTHO05D004816 3.2e-201 705.3 444 75.5
Potri.012G005100 Populus trichocarpa HOM05D004143 ORTHO05D004816 5.4e-201 704.5 445 77.3
TAR629G1812 Trochodendron aralioides HOM05D004143 ORTHO05D004816 7.1e-201 704.1 444 76.1
Haze_00327 Corylus avellana HOM05D004143 ORTHO05D004816 1.2e-200 703.4 444 76.1
Sabra12G0000800 Salix brachista HOM05D004143 ORTHO05D004816 1.2e-200 703.4 445 77.1
CANSAT01G3090 Cannabis sativa HOM05D004143 ORTHO05D004816 1.6e-200 703.0 449 76.2
Ciclev10019944m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.6e-200 703.0 472 73.3
Rhsim03G0218000 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.6e-200 703.0 433 77.8
Sabra15G0000900 Salix brachista HOM05D004143 ORTHO05D004816 2.7e-200 702.2 445 76.6
Sabra12G0007100 Salix brachista HOM05D004143 ORTHO05D004816 4.6e-200 701.4 445 76.6
GSVIVG01038674001 Vitis vinifera HOM05D004143 ORTHO05D004816 7.8e-200 700.7 444 76.6
Ciclev10024344m.g Citrus clementina HOM05D004143 ORTHO05D004816 1.3e-199 699.9 446 77.1
TWI23G0162 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 2.3e-199 699.1 443 76.1
Cpa.g.sc3.179 Carica papaya HOM05D004143 ORTHO05D004816 6.6e-199 697.6 435 77.0
Lj3A892T30 Lonicera japonica HOM05D004143 ORTHO05D004816 1.9e-198 696.0 442 76.2
CANSAT11G0263 Cannabis sativa HOM05D004143 ORTHO05D004816 2.5e-198 695.7 449 74.4
Manes.01G045000 Manihot esculenta HOM05D004143 ORTHO05D004816 3.3e-198 695.3 445 75.5
TWI23G0209 Tripterygium wilfordii HOM05D004143 ORTHO05D004816 4.3e-198 694.9 448 75.0
Dinv17282 Davidia involucrata HOM05D004143 ORTHO05D004816 7.3e-198 694.1 449 75.3
QL09p006127 Quercus lobata HOM05D004143 ORTHO05D004816 1.2e-197 693.3 470 73.2
Actinidia08713 Actinidia chinensis HOM05D004143 ORTHO05D004816 1.6e-197 693.0 443 75.8
Duzib138G0998 Durio zibethinus HOM05D004143 ORTHO05D004816 1.6e-197 693.0 447 74.7
Hund09750 Selenicereus undatus HOM05D004143 ORTHO05D004816 1.6e-197 693.0 444 75.5
MD07G1302200 Malus domestica HOM05D004143 ORTHO05D004816 3.6e-197 691.8 444 74.8
Gohir.D13G001200 Gossypium hirsutum HOM05D004143 ORTHO05D004816 4.7e-197 691.4 439 76.3
Gorai.013G001100 Gossypium raimondii HOM05D004143 ORTHO05D004816 4.7e-197 691.4 439 76.3
COL.COLO4_04975 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.4e-196 689.9 429 77.6
MD01G1230900 Malus domestica HOM05D004143 ORTHO05D004816 1.8e-196 689.5 441 76.2
Atru.chr12.2510 Acer truncatum HOM05D004143 ORTHO05D004816 3.1e-196 688.7 428 77.8
Atru.chr12.2532 Acer truncatum HOM05D004143 ORTHO05D004816 3.1e-196 688.7 428 77.8
vmacro06470 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 4.0e-196 688.3 442 75.3
Actinidia34284 Actinidia chinensis HOM05D004143 ORTHO05D004816 5.2e-196 688.0 443 75.2
Cfa016133 Carpinus fangiana HOM05D004143 ORTHO05D004816 5.2e-196 688.0 444 74.8
Prupe.2G321300 Prunus persica HOM05D004143 ORTHO05D004816 3.4e-195 685.3 444 75.0
Hma1.2p1_0115F.1_g055680 Hydrangea macrophylla HOM05D004143 ORTHO05D004816 5.8e-195 684.5 444 73.6
Gohir.A13G001800 Gossypium hirsutum HOM05D004143 ORTHO05D004816 7.6e-195 684.1 439 76.1
vmacro06469 Vaccinium macrocarpon HOM05D004143 ORTHO05D004816 9.9e-195 683.7 445 74.2
Oeu017360.1 Olea europaea HOM05D004143 ORTHO05D004816 1.3e-194 683.3 445 74.8
EL10Ac3g05140 Beta vulgaris HOM05D004143 ORTHO05D004816 1.7e-194 682.9 442 75.6
Thecc.01G329300 Theobroma cacao HOM05D004143 ORTHO05D004816 2.2e-194 682.6 445 73.0
FAN10G3640 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-194 682.2 439 74.9
FAN10G4294 Fragaria x ananassa HOM05D004143 ORTHO05D004816 2.9e-194 682.2 439 74.9
Glyma.04G226100 Glycine max HOM05D004143 ORTHO05D004816 2.9e-194 682.2 460 72.2
RcHm_v2.0_Chr1g0383221 Rosa chinensis HOM05D004143 ORTHO05D004816 2.9e-194 682.2 445 74.4
arahy.Tifrunner.gnm1.ann1.QS6CEN Arachis hypogaea HOM05D004143 ORTHO05D004816 3.8e-194 681.8 440 73.9
DCAR_010563 Daucus carota HOM05D004143 ORTHO05D004816 3.8e-194 681.8 428 77.3
arahy.Tifrunner.gnm1.ann1.JUEJ49 Arachis hypogaea HOM05D004143 ORTHO05D004816 4.9e-194 681.4 440 74.1
FvH4_7g33150 Fragaria vesca HOM05D004143 ORTHO05D004816 6.4e-194 681.0 441 74.8
arahy.Tifrunner.gnm1.ann1.XXMI3I Arachis hypogaea HOM05D004143 ORTHO05D004816 8.4e-194 680.6 440 74.1
FvH4_7g33230 Fragaria vesca HOM05D004143 ORTHO05D004816 8.4e-194 680.6 441 74.8
FAN03G2936 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.2e-193 677.2 439 74.3
FAN03G3145 Fragaria x ananassa HOM05D004143 ORTHO05D004816 9.2e-193 677.2 439 74.3
MD01G1230800 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-192 676.4 441 74.4
CiPaw.05G208300 Carya illinoinensis HOM05D004143 ORTHO05D004816 2.1e-192 676.0 446 74.0
arahy.Tifrunner.gnm1.ann1.YIM4MN Arachis hypogaea HOM05D004143 ORTHO05D004816 6.0e-192 674.5 448 72.5
arahy.Tifrunner.gnm1.ann1.RI5PYK Arachis hypogaea HOM05D004143 ORTHO05D004816 7.8e-192 674.1 449 72.4
VMungo1309G1903 Vigna mungo HOM05D004143 ORTHO05D004816 7.8e-192 674.1 443 74.0
Rhsim03G0217900 Rhododendron simsii HOM05D004143 ORTHO05D004816 1.3e-191 673.3 448 73.0
Phvul.009G039900 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.0e-191 672.2 449 72.8
PSO063G4813 Papaver somniferum HOM05D004143 ORTHO05D004816 3.9e-191 671.8 438 73.5
DCAR_014598 Daucus carota HOM05D004143 ORTHO05D004816 6.6e-191 671.0 428 76.4
Lsat_1_v5_gn_2_3341 Lactuca sativa HOM05D004143 ORTHO05D004816 6.6e-191 671.0 461 71.6
Actinidia18690 Actinidia chinensis HOM05D004143 ORTHO05D004816 8.7e-191 670.6 446 72.2
FAN01G2649 Fragaria x ananassa HOM05D004143 ORTHO05D004816 8.7e-191 670.6 446 73.8
PSO782G2863 Papaver somniferum HOM05D004143 ORTHO05D004816 2.5e-190 669.1 460 70.4
THA.LOC104814953 Tarenaya hassleriana HOM05D004143 ORTHO05D004816 3.3e-190 668.7 424 76.2
Glyma.06G138800 Glycine max HOM05D004143 ORTHO05D004816 4.3e-190 668.3 446 72.4
MSTRG.23 Avicennia marina HOM05D004143 ORTHO05D004816 5.6e-190 667.9 446 73.1
Ca_16836_v3 Cicer arietinum L. HOM05D004143 ORTHO05D004816 7.3e-190 667.5 447 72.5
Sc19g0000410 Simmondsia chinensis HOM05D004143 ORTHO05D004816 1.2e-189 666.8 428 75.2
Aqoxy5G04387 Aquilegia oxysepala HOM05D004143 ORTHO05D004816 1.6e-189 666.4 429 75.1
Eucgr.K00891 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.6e-189 666.4 443 72.0
MD01G1230700 Malus domestica HOM05D004143 ORTHO05D004816 1.6e-189 666.4 444 72.7
HanXRQChr08g0225831 Helianthus annuus HOM05D004143 ORTHO05D004816 2.1e-189 666.0 447 72.3
ATR0579G031 Amborella trichopoda HOM05D004143 ORTHO05D004816 4.7e-189 664.8 426 72.1
DCAR_020387 Daucus carota HOM05D004143 ORTHO05D004816 1.1e-188 663.7 430 72.6
SEGI_09338 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.4e-188 663.3 442 70.8
Cc02_g00660 Coffea canephora HOM05D004143 ORTHO05D004816 2.4e-188 662.5 431 74.5
ClCG00G006070 Citrullus lanatus HOM05D004143 ORTHO05D004816 4.0e-188 661.8 365 88.2
Thhalv10007558m.g Eutrema salsugineum HOM05D004143 ORTHO05D004816 9.0e-188 660.6 438 72.6
Nitab4.5_0004582g0010 Nicotiana tabacum HOM05D004143 ORTHO05D004816 1.5e-187 659.8 451 71.6
CAN.G303.51 Capsicum annuum HOM05D004143 ORTHO05D004816 3.4e-187 658.7 451 72.1
Nitab4.5_0000021g0150 Nicotiana tabacum HOM05D004143 ORTHO05D004816 3.4e-187 658.7 451 71.8
Glyma.02G221600 Glycine max HOM05D004143 ORTHO05D004816 4.4e-187 658.3 447 72.7
Sp1g16050 Schrenkiella parvula HOM05D004143 ORTHO05D004816 5.8e-187 657.9 429 73.7
HPP92_015066 Vanilla planifolia HOM05D004143 ORTHO05D004816 5.8e-187 657.9 426 73.5
Lj1g0023378 Lotus japonicus HOM05D004143 ORTHO05D004816 9.9e-187 657.1 451 70.7
Psat0s1240g0080 Pisum sativum HOM05D004143 ORTHO05D004816 1.3e-186 656.8 449 71.7
Sopen03g021740 Solanum pennellii HOM05D004143 ORTHO05D004816 2.2e-186 656.0 463 70.2
Carub.0001s1769 Capsella rubella HOM05D004143 ORTHO05D004816 3.8e-186 655.2 429 73.7
AT1G18000 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.4e-186 654.1 424 74.1
AT1G18010 Arabidopsis thaliana HOM05D004143 ORTHO05D004816 8.4e-186 654.1 424 74.1
Medtr3g093270 Medicago truncatula HOM05D004143 ORTHO05D004816 8.4e-186 654.1 452 70.4
AL1G30350 Arabidopsis lyrata HOM05D004143 ORTHO05D004816 1.1e-185 653.7 429 73.4
Ah.13g070980 Amaranthus hybridus HOM05D004143 ORTHO05D004816 9.3e-185 650.6 443 72.2
Oeu017361.2 Olea europaea HOM05D004143 ORTHO05D004816 9.3e-185 650.6 446 71.1
SalBow4G1948 Salvia bowleyana HOM05D004143 ORTHO05D004816 1.2e-184 650.2 431 72.4
Migut.F00972 Erythranthe guttata HOM05D004143 ORTHO05D004816 1.6e-184 649.8 438 71.7
Lj1g0001658 Lotus japonicus HOM05D004143 ORTHO05D004816 1.6e-184 649.8 431 73.5
Lalb_Chr23g0272031 Lupinus albus HOM05D004143 ORTHO05D004816 2.1e-184 649.4 452 70.6
CARHR018600 Cardamine hirsuta HOM05D004143 ORTHO05D004816 4.6e-184 648.3 429 73.0
PGSC0003DMG400000551 Solanum tuberosum HOM05D004143 ORTHO05D004816 4.6e-184 648.3 449 70.6
Gorai.007G115000 Gossypium raimondii HOM05D004143 ORTHO05D004816 6.0e-184 647.9 442 70.8
BraA09t41383Z Brassica rapa HOM05D004143 ORTHO05D004816 1.3e-183 646.7 428 72.7
Lalb_Chr11g0067541 Lupinus albus HOM05D004143 ORTHO05D004816 1.3e-183 646.7 446 71.3
BolC8t51904H Brassica oleracea HOM05D004143 ORTHO05D004816 3.9e-183 645.2 424 73.1
A09p60140 Brassica napus HOM05D004143 ORTHO05D004816 5.1e-183 644.8 428 72.4
C08p43580 Brassica napus HOM05D004143 ORTHO05D004816 1.9e-182 642.9 428 72.4
Aa31LG7G3020 Aethionema arabicum HOM05D004143 ORTHO05D004816 1.3e-181 640.2 424 72.2
VMungo0647G0805 Vigna mungo HOM05D004143 ORTHO05D004816 4.8e-181 638.3 446 71.3
Eucgr.K00457 Eucalyptus grandis HOM05D004143 ORTHO05D004816 1.8e-180 636.3 404 75.7
Medtr3g093290 Medicago truncatula HOM05D004143 ORTHO05D004816 1.8e-180 636.3 434 70.7
AUR62028110 Chenopodium quinoa HOM05D004143 ORTHO05D004816 2.4e-180 636.0 403 76.7
MBI04_g26128_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.0e-180 635.2 431 70.5
CSS0024166 Camellia sinensis var. sinensis HOM05D004143 ORTHO05D004816 6.9e-180 634.4 447 68.7
AUR62005954 Chenopodium quinoa HOM05D004143 ORTHO05D004816 1.5e-179 633.3 403 76.4
Phvul.008G188500 Phaseolus vulgaris HOM05D004143 ORTHO05D004816 3.4e-179 632.1 446 70.2
Eucgr.K00892 Eucalyptus grandis HOM05D004143 ORTHO05D004816 2.4e-177 625.9 443 68.8
HanXRQChr15g0472111 Helianthus annuus HOM05D004143 ORTHO05D004816 5.4e-177 624.8 444 68.5
Nn4g24300 Nelumbo nucifera HOM05D004143 ORTHO05D004816 2.5e-174 615.9 390 74.6
SGA_v2.0_scaffold44G16868 Striga asiatica HOM05D004143 ORTHO05D004816 3.3e-174 615.5 430 69.3
Gohir.A11G102900 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.3e-173 613.6 441 68.3
SGA_v2.0_scaffold18G08489 Striga asiatica HOM05D004143 ORTHO05D004816 4.8e-173 611.7 446 66.8
Zm00001eb418750 Zea mays HOM05D004143 ORTHO05D004816 1.4e-172 610.1 463 63.3
Atru.chr13.384 Acer truncatum HOM05D004143 ORTHO05D004816 1.9e-169 599.7 386 74.6
MBI04_g26129_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 1.2e-168 597.0 432 68.1
Atru.chr5.814 Acer truncatum HOM05D004143 ORTHO05D004816 1.6e-168 596.7 389 73.8
ECA233G4741 Erigeron canadensis HOM05D004143 ORTHO05D000001 3.7e-165 585.5 385 74.0
Duzib128G1652 Durio zibethinus HOM05D004143 ORTHO05D004816 1.1e-161 573.9 362 77.1
MD01G1230600 Malus domestica HOM05D004143 ORTHO05D004816 8.8e-151 537.7 387 68.0
SEGI_21716 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.3e-149 533.9 424 61.6
Potri.012G011000 Populus trichocarpa HOM05D004143 ORTHO05D004816 2.5e-145 519.6 444 60.8
Gohir.D11G107400 Gossypium hirsutum HOM05D004143 ORTHO05D004816 1.2e-144 517.3 442 61.1
SEGI_05818 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 4.7e-144 515.4 423 58.9
SMO340G0156 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 1.2e-139 500.7 419 60.4
COL.COLO4_23082 Corchorus olitorius HOM05D004143 ORTHO05D004816 1.8e-132 476.9 443 56.4
SMO239G0122 Selaginella moellendorffii HOM05D004143 ORTHO05D004816 7.0e-132 474.9 419 57.8
Os04g0105400 Oryza sativa ssp. japonica HOM05D004143 ORTHO05D004816 3.5e-123 446.0 306 68.3
Mapoly0086s0058 Marchantia polymorpha HOM05D004143 ORTHO05D004816 1.0e-114 417.9 435 50.1
unitig_578.g16681 Utricularia gibba HOM05D004143 ORTHO05D004816 2.9e-114 416.4 283 71.7
Cc02_g00640 Coffea canephora HOM05D004143 ORTHO05D004816 1.2e-104 384.4 237 78.1
SEGI_06275 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 1.0e-103 381.3 272 65.8
Pp3c23_3660 Physcomitrium patens HOM05D004143 ORTHO05D004816 1.4e-103 380.9 432 46.1
TPR.G29284 Trifolium pratense HOM05D004143 ORTHO05D004816 1.1e-97 361.3 231 73.6
CDE02G4135 Ceratophyllum demersum HOM05D004143 ORTHO05D004816 2.8e-96 356.7 424 46.2
AagrBONN_evm.TU.Sc2ySwM_344.1928 Anthoceros agrestis HOM05D004143 ORTHO05D004816 2.9e-93 346.7 415 43.6
Cpa.g.c30701.1 Carica papaya HOM05D004143 ORTHO05D004816 1.4e-71 274.6 161 79.5
MBI04_g09827_MAGBIO Magnolia biondii HOM05D004143 ORTHO05D004816 4.4e-70 269.6 279 55.6
Cc02_g00650 Coffea canephora HOM05D004143 ORTHO05D004816 1.0e-50 205.3 148 69.6
SEGI_07746 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 2.6e-46 190.7 113 76.1
Actinidia28288 Actinidia chinensis HOM05D004143 ORTHO05D004816 2.5e-41 174.1 127 66.9
SEGI_40229 Sequoiadendron giganteum HOM05D004143 ORTHO05D004816 5.3e-39 166.4 95 78.9
Solyc03g080020.4 Solanum lycopersicum HOM05D004143 ORTHO05D004816 7.7e-38 162.5 445 29.0
Peaxi162Scf01026g00266 Petunia axillaris HOM05D004143 ORTHO05D004816 1.5e-30 138.3 467 27.4
VMungo1383G1334 Vigna mungo HOM05D004143 ORTHO05D432805 4.4e-25 120.2 95 63.2
GSVIVG01027551001 Vitis vinifera HOM05D000016 ORTHO05D000109 3.8e-21 107.1 106 54.7
TPR.G22104 Trifolium pratense HOM05D004143 ORTHO05D004816 2.6e-14 84.3 55 70.9
unitig_578.g16680 Utricularia gibba HOM05D004143 ORTHO05D004816 1.3e-13 82.0 79 57.0
Lj1g0000746 Lotus japonicus HOM05D001886 ORTHO05D005666 8.8e-10 69.3 255 25.9
Dinv35628 Davidia involucrata HOM05D001886 ORTHO05D005666 1.7e-08 65.1 193 26.9
arahy.Tifrunner.gnm1.ann1.LM62V2 Arachis hypogaea HOM05D001886 ORTHO05D005666 1.8e-07 61.6 193 24.9
Thecc.05G043700 Theobroma cacao HOM05D001886 ORTHO05D005666 4.1e-07 60.5 217 25.3
Mapoly0174s0006 Marchantia polymorpha HOM05D001886 ORTHO05D005666 5.4e-07 60.1 114 23.7
Duzib093G1847 Durio zibethinus HOM05D001886 ORTHO05D005666 1.6e-06 58.5 220 25.9
Hma1.2p1_0105F.1_g050690 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 1.6e-06 58.5 43 62.8
Lalb_Chr01g0019241 Lupinus albus HOM05D001886 ORTHO05D005666 1.6e-06 58.5 260 24.2
Hma1.2p1_1050F.1_g251950 Hydrangea macrophylla HOM05D004298 ORTHO05D004816 3.5e-06 57.4 43 60.5
Lj1g0019565 Lotus japonicus HOM05D001886 ORTHO05D005666 4.5e-06 57.0 397 22.7
Medtr7g099870 Medicago truncatula HOM05D001886 ORTHO05D005666 5.9e-06 56.6 197 25.4
Medtr7g099910 Medicago truncatula HOM05D001886 ORTHO05D005666 5.9e-06 56.6 145 29.7


User provided reference genes

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