Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000742 Sechium edule HOM05D004551 ORTHO05D005262 1.1e-38 162.9 86 100.0
ClCG03G001090 Citrullus lanatus HOM05D004551 ORTHO05D005262 1.2e-37 159.5 86 96.5
MELO3C020586.2 Cucumis melo HOM05D004551 ORTHO05D005262 4.5e-37 157.5 86 95.3
CsaV3_1G035840 Cucumis sativus L. HOM05D004551 ORTHO05D005262 4.5e-37 157.5 86 95.3
MD11G1085200 Malus domestica HOM05D004551 ORTHO05D005262 9.4e-35 149.8 86 88.4
Prupe.6G065200 Prunus persica HOM05D004551 ORTHO05D005262 2.7e-34 148.3 85 80.0
CiPaw.13G084300 Carya illinoinensis HOM05D004551 ORTHO05D005262 1.0e-33 146.4 86 86.0
CiPaw.14G063000 Carya illinoinensis HOM05D004551 ORTHO05D005262 3.0e-33 144.8 86 88.4
Lsat_1_v5_gn_9_25241 Lactuca sativa HOM05D004551 ORTHO05D005262 3.9e-33 144.4 86 80.2
HanXRQChr08g0237601 Helianthus annuus HOM05D004551 ORTHO05D005262 2.0e-32 142.1 86 79.1
CSS0004921 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 3.3e-32 141.4 86 82.6
Dinv34317 Davidia involucrata HOM05D004551 ORTHO05D005262 3.3e-32 141.4 86 87.2
Glyma.02G308400 Glycine max HOM05D004551 ORTHO05D005262 5.7e-32 140.6 86 80.2
QL01p028907 Quercus lobata HOM05D004551 ORTHO05D005262 5.7e-32 140.6 88 81.8
HanXRQChr09g0243371 Helianthus annuus HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 77.9
HanXRQChr09g0243381 Helianthus annuus HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 77.9
Lalb_Chr24g0397121 Lupinus albus HOM05D004551 ORTHO05D005262 7.4e-32 140.2 86 77.9
GSVIVG01024832001 Vitis vinifera HOM05D004551 ORTHO05D005262 7.4e-32 140.2 82 85.4
Lj3g0011983 Lotus japonicus HOM05D004551 ORTHO05D005262 9.7e-32 139.8 86 77.9
Oeu017418.1 Olea europaea HOM05D004551 ORTHO05D005262 1.3e-31 139.4 86 74.4
Glyma.13G339700 Glycine max HOM05D004551 ORTHO05D005262 1.7e-31 139.0 86 79.1
Lj4g0001727 Lotus japonicus HOM05D004551 ORTHO05D005262 2.2e-31 138.7 86 76.7
Ca_01298_v3 Cicer arietinum L. HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 74.4
HanXRQChr02g0055991 Helianthus annuus HOM05D004551 ORTHO05D005262 4.8e-31 137.5 86 76.7
Sed0006275 Sechium edule HOM05D004551 ORTHO05D005262 4.8e-31 137.5 76 96.1
Hma1.2p1_1521F.1_g288710 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 6.3e-31 137.1 86 77.9
CANSAT54G1854 Cannabis sativa HOM05D004551 ORTHO05D005262 8.2e-31 136.7 86 86.0
Glyma.15G034700 Glycine max HOM05D004551 ORTHO05D005262 1.1e-30 136.3 86 77.9
Hma1.2p1_0543F.1_g175360 Hydrangea macrophylla HOM05D004551 ORTHO05D005262 3.1e-30 134.8 86 79.1
Glyma.14G004700 Glycine max HOM05D004551 ORTHO05D005262 4.1e-30 134.4 86 77.9
Dinv35533 Davidia involucrata HOM05D004551 ORTHO05D005262 5.3e-30 134.0 82 75.6
Phvul.008G288300 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 5.3e-30 134.0 82 76.8
RcHm_v2.0_Chr5g0067321 Rosa chinensis HOM05D004551 ORTHO05D005262 5.3e-30 134.0 82 85.4
Oeu036200.1 Olea europaea HOM05D004551 ORTHO05D005262 7.0e-30 133.7 84 72.6
Actinidia08554 Actinidia chinensis HOM05D004551 ORTHO05D005262 1.2e-29 132.9 85 82.4
Nn2g13555 Nelumbo nucifera HOM05D004551 ORTHO05D005262 1.2e-29 132.9 82 82.9
Cc01_g13610 Coffea canephora HOM05D004551 ORTHO05D005262 2.0e-29 132.1 76 92.1
Psat5g285840 Pisum sativum HOM05D004551 ORTHO05D005262 2.6e-29 131.7 83 72.3
FvH4_3g37430 Fragaria vesca HOM05D004551 ORTHO05D005262 4.5e-29 131.0 79 75.9
FAN11G1128 Fragaria x ananassa HOM05D004551 ORTHO05D005262 4.5e-29 131.0 79 75.9
FAN16G1443 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.0e-28 129.8 79 75.9
FAN25G2220 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.0e-28 129.8 79 75.9
FAN16G2867 Fragaria x ananassa HOM05D004551 ORTHO05D005262 1.3e-28 129.4 78 75.6
MBI05_g10286_MAGBIO Magnolia biondii HOM05D004551 ORTHO05D005262 1.3e-28 129.4 82 72.0
TPR.G6876 Trifolium pratense HOM05D004551 ORTHO05D005262 1.3e-28 129.4 79 73.4
arahy.Tifrunner.gnm1.ann1.S44GTI Arachis hypogaea HOM05D004551 ORTHO05D005262 2.2e-28 128.6 91 67.0
CSS0032515 Camellia sinensis var. sinensis HOM05D004551 ORTHO05D005262 2.2e-28 128.6 82 72.0
Migut.J00249 Erythranthe guttata HOM05D004551 ORTHO05D005262 2.9e-28 128.3 86 68.6
Eucgr.B02289 Eucalyptus grandis HOM05D004551 ORTHO05D005262 3.8e-28 127.9 86 77.9
Medtr2g097870 Medicago truncatula HOM05D004551 ORTHO05D005262 5.0e-28 127.5 81 72.8
arahy.Tifrunner.gnm1.ann1.CMV3ZL Arachis hypogaea HOM05D004551 ORTHO05D005262 8.5e-28 126.7 91 65.9
CDE02G0008 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 4.2e-27 124.4 86 66.3
TWI75G0664 Tripterygium wilfordii HOM05D004551 ORTHO05D005262 4.2e-27 124.4 85 68.2
Sc12g0001090 Simmondsia chinensis HOM05D004551 ORTHO05D005262 1.2e-26 122.9 82 80.5
Nitab4.5_0002152g0070 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.6e-26 122.5 83 69.9
Sp4g12260 Schrenkiella parvula HOM05D004551 ORTHO05D005262 1.6e-26 122.5 86 64.0
AL4G24240 Arabidopsis lyrata HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 65.1
CDE04G2361 Ceratophyllum demersum HOM05D004551 ORTHO05D005262 2.1e-26 122.1 76 72.4
Gohir.A03G047200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 2.1e-26 122.1 83 67.5
Gorai.003G126500 Gossypium raimondii HOM05D004551 ORTHO05D005262 2.1e-26 122.1 83 67.5
SalBow1G6960 Salvia bowleyana HOM05D004551 ORTHO05D005262 2.1e-26 122.1 86 64.0
unitig_578.g15888 Utricularia gibba HOM05D004551 ORTHO05D005262 2.7e-26 121.7 84 65.5
Cc06_g01910 Coffea canephora HOM05D004551 ORTHO05D005262 3.6e-26 121.3 82 70.7
FAN21G1099 Fragaria x ananassa HOM05D004551 ORTHO05D005262 3.6e-26 121.3 73 76.7
THA.LOC104800711 Tarenaya hassleriana HOM05D004551 ORTHO05D005262 3.6e-26 121.3 82 64.6
A04p22520 Brassica napus HOM05D004551 ORTHO05D005262 4.7e-26 120.9 86 62.8
Migut.L01982 Erythranthe guttata HOM05D004551 ORTHO05D005262 4.7e-26 120.9 79 68.4
Thhalv10017490m.g Eutrema salsugineum HOM05D004551 ORTHO05D005262 4.7e-26 120.9 86 65.1
Aa31LG5G6930 Aethionema arabicum HOM05D004551 ORTHO05D005262 6.1e-26 120.6 86 66.3
PSO339G1751 Papaver somniferum HOM05D004551 ORTHO05D005262 8.0e-26 120.2 78 69.2
PSO384G2886 Papaver somniferum HOM05D004551 ORTHO05D005262 8.0e-26 120.2 78 69.2
Rhsim04G0164100 Rhododendron simsii HOM05D004551 ORTHO05D005262 8.0e-26 120.2 86 67.4
Duzib150G1644 Durio zibethinus HOM05D004551 ORTHO05D005262 1.4e-25 119.4 83 74.7
Sopen06g001810 Solanum pennellii HOM05D004551 ORTHO05D005262 2.3e-25 118.6 86 64.0
Ciclev10029702m.g Citrus clementina HOM05D004551 ORTHO05D005262 3.0e-25 118.2 87 67.8
Gohir.A05G091300 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 83 66.3
Gohir.D05G092200 Gossypium hirsutum HOM05D004551 ORTHO05D005262 3.0e-25 118.2 83 66.3
Gorai.009G094700 Gossypium raimondii HOM05D004551 ORTHO05D005262 3.0e-25 118.2 83 66.3
CARHR122870 Cardamine hirsuta HOM05D004551 ORTHO05D005262 4.0e-25 117.9 83 63.9
Duzib168G2386 Durio zibethinus HOM05D004551 ORTHO05D005262 4.0e-25 117.9 83 65.1
Duzib170G1093 Durio zibethinus HOM05D004551 ORTHO05D005262 4.0e-25 117.9 83 74.7
Solyc06g005840.4 Solanum lycopersicum HOM05D004551 ORTHO05D005262 4.0e-25 117.9 86 64.0
Glyma.15G229800 Glycine max HOM05D004551 ORTHO05D005262 5.2e-25 117.5 68 79.4
Peaxi162Scf01302g00041 Petunia axillaris HOM05D004551 ORTHO05D005262 5.2e-25 117.5 83 66.3
A05p15870 Brassica napus HOM05D004551 ORTHO05D005262 6.7e-25 117.1 86 61.6
Hund18875 Selenicereus undatus HOM05D004551 ORTHO05D005262 6.7e-25 117.1 80 67.5
PGSC0003DMG402020339 Solanum tuberosum HOM05D004551 ORTHO05D005262 6.7e-25 117.1 77 68.8
Thecc.09G309400 Theobroma cacao HOM05D004551 ORTHO05D005262 6.7e-25 117.1 80 67.5
C04p21310 Brassica napus HOM05D004551 ORTHO05D005262 8.8e-25 116.7 84 61.9
Carub.0004s1058 Capsella rubella HOM05D004551 ORTHO05D005262 8.8e-25 116.7 86 62.8
PGSC0003DMG400020830 Solanum tuberosum HOM05D004551 ORTHO05D005262 8.8e-25 116.7 82 65.9
Lalb_Chr22g0352421 Lupinus albus HOM05D004551 ORTHO05D005262 1.2e-24 116.3 68 77.9
AT2G29530 Arabidopsis thaliana HOM05D004551 ORTHO05D005262 1.5e-24 115.9 86 65.1
Solyc09g011760.3 Solanum lycopersicum HOM05D004551 ORTHO05D005262 1.5e-24 115.9 77 67.5
Sopen09g006580 Solanum pennellii HOM05D004551 ORTHO05D005262 1.5e-24 115.9 77 67.5
BolC4t27387H Brassica oleracea HOM05D004551 ORTHO05D005262 2.6e-24 115.2 95 56.8
BcaB02g10259 Brassica carinata HOM05D004551 ORTHO05D005262 3.3e-24 114.8 84 60.7
MD03G1080700 Malus domestica HOM05D004551 ORTHO05D005262 4.4e-24 114.4 63 81.0
Pp3c1_35930 Physcomitrium patens HOM05D004551 ORTHO05D005262 7.5e-24 113.6 75 64.0
Zm00001eb211450 Zea mays HOM05D004551 ORTHO05D005262 9.7e-24 113.2 79 67.1
ECA247G0999 Erigeron canadensis HOM05D004551 ORTHO05D005262 1.3e-23 112.8 85 72.9
Os03g0825400 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 1.3e-23 112.8 79 73.4
C04p58670 Brassica napus HOM05D004551 ORTHO05D005262 1.7e-23 112.5 98 55.1
COL.COLO4_19068 Corchorus olitorius HOM05D004551 ORTHO05D005262 2.2e-23 112.1 87 62.1
EL10Ac7g16095 Beta vulgaris HOM05D004551 ORTHO05D005262 2.8e-23 111.7 82 65.9
Dinv17073 Davidia involucrata HOM05D004551 ORTHO05D005262 6.3e-23 110.5 70 71.4
Dinv43017 Davidia involucrata HOM05D004551 ORTHO05D005262 6.3e-23 110.5 70 71.4
DCAR_005918 Daucus carota HOM05D004551 ORTHO05D005262 8.3e-23 110.2 95 66.3
Potri.009G039600 Populus trichocarpa HOM05D004551 ORTHO05D005262 8.3e-23 110.2 87 58.6
Haze_24227 Corylus avellana HOM05D004551 ORTHO05D005262 1.4e-22 109.4 69 72.5
vmacro08615 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.4e-22 109.4 74 67.6
unitig_8.g4441 Utricularia gibba HOM05D004551 ORTHO05D005262 1.8e-22 109.0 96 58.3
Manes.02G124000 Manihot esculenta HOM05D004551 ORTHO05D005262 3.1e-22 108.2 86 58.1
Os07g0243100 Oryza sativa ssp. japonica HOM05D004551 ORTHO05D005262 3.1e-22 108.2 76 65.8
Atru.chr3.4045 Acer truncatum HOM05D004551 ORTHO05D005262 4.1e-22 107.8 75 74.7
Manes.01G166600 Manihot esculenta HOM05D004551 ORTHO05D005262 4.1e-22 107.8 86 58.1
BraA04t17797Z Brassica rapa HOM05D004551 ORTHO05D005262 9.1e-22 106.7 115 47.8
Potri.001G246500 Populus trichocarpa HOM05D004551 ORTHO05D005262 9.1e-22 106.7 87 56.3
Ah.15g090420 Amaranthus hybridus HOM05D004551 ORTHO05D005262 1.2e-21 106.3 73 64.4
PGR102G3288 Punica granatum HOM05D004551 ORTHO05D005262 1.6e-21 105.9 68 83.8
vmacro03012 Vaccinium macrocarpon HOM05D004551 ORTHO05D005262 1.6e-21 105.9 70 67.1
AagrBONN_evm.TU.Sc2ySwM_117.3522 Anthoceros agrestis HOM05D004551 ORTHO05D005262 3.5e-21 104.8 78 57.7
Mapoly0052s0053 Marchantia polymorpha HOM05D004551 ORTHO05D005262 4.5e-21 104.4 73 61.6
HPP92_018167 Vanilla planifolia HOM05D004551 ORTHO05D005262 7.7e-21 103.6 60 78.3
Nitab4.5_0002405g0130 Nicotiana tabacum HOM05D004551 ORTHO05D005262 1.0e-20 103.2 82 61.0
BcaB06g28317 Brassica carinata HOM05D004551 ORTHO05D005262 1.3e-20 102.8 84 63.1
CAN.G978.3 Capsicum annuum HOM05D004551 ORTHO05D005262 1.3e-20 102.8 65 70.8
Aqoxy1G00774 Aquilegia oxysepala HOM05D004551 ORTHO05D005262 1.7e-20 102.4 72 66.7
SMO172G0051 Selaginella moellendorffii HOM05D004551 ORTHO05D005262 9.4e-19 96.7 72 62.5
QL02p091823 Quercus lobata HOM05D000741 ORTHO05D000506 1.0e-17 93.2 53 75.5
QL02p079044 Quercus lobata HOM05D004551 ORTHO05D005262 1.8e-17 92.4 52 76.9
Phvul.L008843 Phaseolus vulgaris HOM05D004551 ORTHO05D005262 3.0e-17 91.7 82 58.5
Gohir.D03G120000 Gossypium hirsutum HOM05D004551 ORTHO05D005262 5.2e-17 90.9 83 56.6
BraA05t20500Z Brassica rapa HOM05D004551 ORTHO05D005262 6.8e-17 90.5 87 52.9
Sabra16G0149600 Salix brachista HOM05D004551 ORTHO05D005262 1.2e-16 89.7 71 59.2
AUR62020055 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.6e-16 88.6 64 64.1
ECA236G0522 Erigeron canadensis HOM05D004551 ORTHO05D005262 2.6e-16 88.6 62 66.1
Nitab4.5_0000880g0120 Nicotiana tabacum HOM05D004551 ORTHO05D005262 3.4e-16 88.2 76 59.2
MCO07G332 Micromonas commoda HOM05D004551 ORTHO05D005262 7.5e-16 87.0 72 50.0
MD02G1203300 Malus domestica HOM05D004551 ORTHO05D005262 9.8e-16 86.7 52 76.9
Oeu030799.1 Olea europaea HOM05D004551 ORTHO05D005262 2.2e-15 85.5 52 71.2
VMungo0647G0519 Vigna mungo HOM05D000879 ORTHO05D002864 2.2e-15 85.5 54 66.7
CBR_g3168 Chara braunii HOM05D004551 ORTHO05D005262 3.7e-15 84.7 71 49.3
Zm00001eb063090 Zea mays HOM05D004551 ORTHO05D005262 8.3e-15 83.6 76 59.2
HPP92_018179 Vanilla planifolia HOM05D004551 ORTHO05D005262 1.8e-14 82.4 43 86.0
Ah.13g070320 Amaranthus hybridus HOM05D004551 ORTHO05D005262 4.1e-14 81.3 56 67.9
EL10Ac7g17098 Beta vulgaris HOM05D004551 ORTHO05D005262 2.9e-12 75.1 97 41.2
BolC4t23660H Brassica oleracea HOM05D004551 ORTHO05D005262 3.8e-12 74.7 54 59.3
Rhsim13G0075400 Rhododendron simsii HOM05D004551 ORTHO05D005262 1.5e-11 72.8 70 52.9
AUR62001717 Chenopodium quinoa HOM05D004551 ORTHO05D005262 2.5e-11 72.0 97 42.3
DCAR_007410 Daucus carota HOM05D004551 ORTHO05D005262 4.2e-11 71.2 72 51.4
SGA_v2.0_scaffold75G24985 Striga asiatica HOM05D001002 ORTHO05D000802 5.5e-11 70.9 47 61.7
Cre12.g514900 Chlamydomonas reinhardtii HOM05D004551 ORTHO05D005262 1.4e-09 66.2 62 46.8
PRCOL_00001542 Prasinoderma coloniale HOM05D002457 ORTHO05D005262 1.4e-09 66.2 68 54.4
TPR.G13621 Trifolium pratense HOM05D004551 ORTHO05D005262 3.0e-09 65.1 40 72.5
MELO3C035440.2 Cucumis melo HOM05D004551 ORTHO05D005262 8.9e-09 63.5 116 40.5
SHI22087 Sapria himalayana HOM05D004551 ORTHO05D005262 2.4e-06 55.5 59 42.4


User provided reference genes

Program Settings