Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000628 Sechium edule HOM05D004191 ORTHO05D004887 3.5e-103 378.3 187 100.0
MELO3C018102.2 Cucumis melo HOM05D004191 ORTHO05D004887 7.4e-101 370.5 187 97.3
CsaV3_3G023130 Cucumis sativus L. HOM05D004191 ORTHO05D004887 7.4e-101 370.5 187 97.3
Sed0012224 Sechium edule HOM05D004191 ORTHO05D004887 3.1e-99 365.2 187 95.7
MD11G1225200 Malus domestica HOM05D004191 ORTHO05D004887 1.4e-96 356.3 187 91.4
Duzib093G1201 Durio zibethinus HOM05D004191 ORTHO05D004887 1.9e-96 355.9 187 92.0
FvH4_3g21920 Fragaria vesca HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 90.4
FAN16G1028 Fragaria x ananassa HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 90.4
RcHm_v2.0_Chr5g0037731 Rosa chinensis HOM05D004191 ORTHO05D004887 2.5e-96 355.5 187 90.4
MD03G1210500 Malus domestica HOM05D004191 ORTHO05D004887 4.2e-96 354.8 187 90.9
FAN21G0017 Fragaria x ananassa HOM05D004191 ORTHO05D004887 5.5e-96 354.4 187 89.8
FAN25G1832 Fragaria x ananassa HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 89.3
Prupe.4G204700 Prunus persica HOM05D004191 ORTHO05D004887 7.1e-96 354.0 187 89.8
Gohir.A09G118400 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 90.9
Gohir.D09G115300 Gossypium hirsutum HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 90.9
Gorai.006G132900 Gossypium raimondii HOM05D004191 ORTHO05D004887 1.2e-95 353.2 187 90.9
Duzib106G0849 Durio zibethinus HOM05D004191 ORTHO05D004887 1.6e-95 352.8 187 90.9
Ciclev10009626m.g Citrus clementina HOM05D004191 ORTHO05D004887 2.1e-95 352.4 187 89.8
Thecc.05G140700 Theobroma cacao HOM05D004191 ORTHO05D004887 3.5e-95 351.7 187 90.9
Cc05_g13280 Coffea canephora HOM05D004191 ORTHO05D004887 4.6e-95 351.3 187 90.4
Potri.001G418400 Populus trichocarpa HOM05D004191 ORTHO05D004887 6.0e-95 350.9 187 90.4
QL08p013180 Quercus lobata HOM05D004191 ORTHO05D004887 7.9e-95 350.5 186 90.3
Sabra16G0284100 Salix brachista HOM05D004191 ORTHO05D004887 7.9e-95 350.5 187 89.8
Cpa.g.sc97.62 Carica papaya HOM05D004191 ORTHO05D004887 1.0e-94 350.1 187 90.4
COL.COLO4_05062 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 90.4
Oeu032442.1 Olea europaea HOM05D004191 ORTHO05D004887 1.3e-94 349.7 187 89.8
CiPaw.11G184500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
CiPaw.12G126500 Carya illinoinensis HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 89.3
ECA236G4841 Erigeron canadensis HOM05D004191 ORTHO05D004887 1.8e-94 349.4 187 88.8
Manes.03G123300 Manihot esculenta HOM05D004191 ORTHO05D004887 2.3e-94 349.0 187 89.8
ClCG05G014740 Citrullus lanatus HOM05D004191 ORTHO05D004887 3.0e-94 348.6 241 75.9
Lj3g0027602 Lotus japonicus HOM05D004191 ORTHO05D004887 3.0e-94 348.6 187 89.3
arahy.Tifrunner.gnm1.ann1.HY89VY Arachis hypogaea HOM05D004191 ORTHO05D004887 3.9e-94 348.2 187 88.8
arahy.Tifrunner.gnm1.ann1.B9KZG1 Arachis hypogaea HOM05D004191 ORTHO05D004887 5.1e-94 347.8 187 88.8
PGR031G0276 Punica granatum HOM05D004191 ORTHO05D004887 5.1e-94 347.8 183 91.8
HanXRQChr02g0054141 Helianthus annuus HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 88.8
Peaxi162Scf00082g00016 Petunia axillaris HOM05D004191 ORTHO05D004887 6.7e-94 347.4 187 89.8
Eucgr.F03430 Eucalyptus grandis HOM05D004191 ORTHO05D004887 8.7e-94 347.1 184 90.8
Solyc10g006490.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 8.7e-94 347.1 187 89.3
Nitab4.5_0002838g0150 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 89.3
PGSC0003DMG400005405 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.1e-93 346.7 187 88.8
Actinidia34670 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.8
Dinv40713 Davidia involucrata HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.8
FAN11G1314 Fragaria x ananassa HOM05D004191 ORTHO05D004887 1.5e-93 346.3 200 84.5
Lj1A865T18 Lonicera japonica HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 89.3
Nitab4.5_0005420g0050 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 88.8
SGA_v2.0_scaffold416G51230 Striga asiatica HOM05D004191 ORTHO05D004887 1.5e-93 346.3 187 87.2
CSS0034391 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 89.8
Hund11592 Selenicereus undatus HOM05D004191 ORTHO05D004887 1.9e-93 345.9 187 88.8
Lalb_Chr03g0030141 Lupinus albus HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 88.8
Phvul.011G139700 Phaseolus vulgaris HOM05D004191 ORTHO05D004887 2.5e-93 345.5 187 89.3
Lalb_Chr19g0134771 Lupinus albus HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.2
GSVIVG01002004001 Vitis vinifera HOM05D004191 ORTHO05D004887 3.3e-93 345.1 187 88.8
EL10Ac5g13057 Beta vulgaris HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 88.2
Sopen01g040260 Solanum pennellii HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.3
TPR.G25893 Trifolium pratense HOM05D004191 ORTHO05D004887 4.3e-93 344.7 187 89.3
CANSAT80G0944 Cannabis sativa HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
CAN.G134.12 Capsicum annuum HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 87.7
Ca_18852_v3 Cicer arietinum L. HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.8
Lsat_1_v5_gn_7_108481 Lactuca sativa HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 87.7
SalBow7G2717 Salvia bowleyana HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 87.2
VMungo1127G0852 Vigna mungo HOM05D004191 ORTHO05D004887 5.7e-93 344.4 187 88.2
Sc22g0000820 Simmondsia chinensis HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
TAR371G0103 Trochodendron aralioides HOM05D004191 ORTHO05D004887 7.4e-93 344.0 187 88.2
THA.LOC104799884 Tarenaya hassleriana HOM05D004191 ORTHO05D004887 9.6e-93 343.6 187 87.2
Glyma.06G269400 Glycine max HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.2
Glyma.12G135200 Glycine max HOM05D004191 ORTHO05D004887 1.3e-92 343.2 187 88.2
PSO170G1932 Papaver somniferum HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 87.7
Solyc01g096530.3 Solanum lycopersicum HOM05D004191 ORTHO05D004887 1.6e-92 342.8 187 88.2
PSO675G8300 Papaver somniferum HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.7
TWI39G0061 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 2.1e-92 342.4 187 87.2
Aqoxy4G00334 Aquilegia oxysepala HOM05D004191 ORTHO05D004887 2.8e-92 342.0 187 87.7
Oeu007633.1 Olea europaea HOM05D004191 ORTHO05D004887 2.8e-92 342.0 196 86.2
Ah.02g116780 Amaranthus hybridus HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 86.6
MBI02_g10101_MAGBIO Magnolia biondii HOM05D004191 ORTHO05D004887 3.7e-92 341.7 187 87.7
CSS0028201 Camellia sinensis var. sinensis HOM05D004191 ORTHO05D004887 4.8e-92 341.3 187 88.2
Hma1.2p1_0049F.1_g028640 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 6.2e-92 340.9 186 87.6
AL8G30180 Arabidopsis lyrata HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.6
Carub.0008s1502 Capsella rubella HOM05D004191 ORTHO05D004887 1.8e-91 339.3 187 86.1
Aa31LG3G10650 Aethionema arabicum HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.6
MSTRG.12958 Avicennia marina HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 87.2
Eucgr.F00980 Eucalyptus grandis HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 86.1
Rhsim12G0150700 Rhododendron simsii HOM05D004191 ORTHO05D004887 3.1e-91 338.6 187 85.6
ATR0609G026 Amborella trichopoda HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 87.2
Thhalv10019192m.g Eutrema salsugineum HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
vmacro16476 Vaccinium macrocarpon HOM05D004191 ORTHO05D004887 4.1e-91 338.2 187 85.6
AT5G54750 Arabidopsis thaliana HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 85.6
CARHR268090 Cardamine hirsuta HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 86.1
Medtr8g027700 Medicago truncatula HOM05D004191 ORTHO05D004887 5.3e-91 337.8 187 87.2
Migut.H01854 Erythranthe guttata HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.0
SpUn0117_0020 Schrenkiella parvula HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 85.6
Zm00001eb433090 Zea mays HOM05D004191 ORTHO05D004887 6.9e-91 337.4 187 86.6
Os03g0402000 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 9.0e-91 337.0 188 86.2
Os07g0642300 Oryza sativa ssp. japonica HOM05D004191 ORTHO05D004887 9.0e-91 337.0 188 86.2
MSTRG.6892 Avicennia marina HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 86.1
BcaB07g31034 Brassica carinata HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.0
A09p20070 Brassica napus HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.0
C09p25460 Brassica napus HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.0
BraA09t37620Z Brassica rapa HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 85.0
Zm00001eb067130 Zea mays HOM05D004191 ORTHO05D004887 1.5e-90 336.3 187 86.1
TAR626G0300 Trochodendron aralioides HOM05D004191 ORTHO05D004887 2.0e-90 335.9 187 86.1
CAN.G1110.10 Capsicum annuum HOM05D004191 ORTHO05D004887 2.6e-90 335.5 201 82.6
Medtr4g081170 Medicago truncatula HOM05D004191 ORTHO05D004887 3.4e-90 335.1 187 86.6
HPP92_013205 Vanilla planifolia HOM05D001003 ORTHO05D004887 3.4e-90 335.1 186 85.5
Sp4g10480 Schrenkiella parvula HOM05D004191 ORTHO05D004887 4.5e-90 334.7 187 84.5
CDE02G0163 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 85.0
PGR083G1136 Punica granatum HOM05D004191 ORTHO05D004887 5.8e-90 334.3 193 84.5
SGA_v2.0_scaffold24G10288 Striga asiatica HOM05D004191 ORTHO05D004887 5.8e-90 334.3 187 85.0
TPR.G24299 Trifolium pratense HOM05D004191 ORTHO05D004887 5.8e-90 334.3 186 87.6
Sopen10g002440 Solanum pennellii HOM05D004191 ORTHO05D004887 7.6e-90 334.0 206 80.6
ATR0109G002 Amborella trichopoda HOM05D004191 ORTHO05D004887 1.7e-89 332.8 187 85.6
PSO782G4612 Papaver somniferum HOM05D004191 ORTHO05D004887 2.2e-89 332.4 203 80.8
TWI38G1569 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 1.9e-88 329.3 208 79.3
Migut.M01809 Erythranthe guttata HOM05D004191 ORTHO05D004887 7.1e-88 327.4 181 85.6
Sc15g0001730 Simmondsia chinensis HOM05D004191 ORTHO05D004887 2.1e-87 325.9 187 83.4
unitig_0.g2386 Utricularia gibba HOM05D004191 ORTHO05D004887 2.1e-87 325.9 183 85.8
BolC9t55449H Brassica oleracea HOM05D004191 ORTHO05D004887 3.5e-87 325.1 206 77.7
arahy.Tifrunner.gnm1.ann1.T6DWBF Arachis hypogaea HOM05D004191 ORTHO05D004887 6.1e-87 324.3 187 82.9
Hund24114 Selenicereus undatus HOM05D004191 ORTHO05D004887 2.3e-86 322.4 211 77.7
Manes.15G076000 Manihot esculenta HOM05D004191 ORTHO05D004887 1.5e-85 319.7 185 81.1
Lsat_1_v5_gn_5_5821 Lactuca sativa HOM05D004191 ORTHO05D004887 3.4e-82 308.5 173 84.4
Eucgr.F00978 Eucalyptus grandis HOM05D004191 ORTHO05D004887 7.7e-82 307.4 169 86.4
Nn1g08677 Nelumbo nucifera HOM05D004191 ORTHO05D004887 3.2e-80 302.0 178 83.1
Mapoly0006s0106 Marchantia polymorpha HOM05D004191 ORTHO05D004887 5.5e-80 301.2 187 75.9
AagrBONN_evm.TU.Sc2ySwM_344.5600 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-79 299.7 181 76.2
AagrBONN_evm.TU.Sc2ySwM_344.5601 Anthoceros agrestis HOM05D004191 ORTHO05D004887 1.6e-79 299.7 181 76.2
Peaxi162Scf01434g00020 Petunia axillaris HOM05D004191 ORTHO05D004887 3.9e-78 295.0 187 79.7
AagrBONN_evm.TU.Sc2ySwM_362.1587 Anthoceros agrestis HOM05D004191 ORTHO05D004887 5.1e-78 294.7 181 75.1
SMO165G0074 Selaginella moellendorffii HOM05D004191 ORTHO05D004887 8.8e-78 293.9 187 74.3
CBR_g9060 Chara braunii HOM05D004191 ORTHO05D004887 5.7e-77 291.2 186 75.3
Nitab4.5_0002342g0090 Nicotiana tabacum HOM05D004191 ORTHO05D004887 7.4e-77 290.8 187 77.0
AagrBONN_evm.TU.Sc2ySwM_344.5599 Anthoceros agrestis HOM05D004191 ORTHO05D004887 6.3e-76 287.7 172 77.3
BcaB07g30600 Brassica carinata HOM05D004191 ORTHO05D004887 1.8e-75 286.2 184 78.8
Nitab4.5_0002229g0200 Nicotiana tabacum HOM05D004191 ORTHO05D004887 1.8e-75 286.2 187 76.5
BcaC04g21960 Brassica carinata HOM05D004191 ORTHO05D004887 3.4e-74 282.0 154 87.0
Hma1.2p1_0774F.1_g216345 Hydrangea macrophylla HOM05D004191 ORTHO05D004887 7.7e-74 280.8 159 84.9
Pp3c6_29730 Physcomitrium patens HOM05D004191 ORTHO05D004887 2.2e-73 279.3 180 72.8
arahy.Tifrunner.gnm1.ann1.N3PQ25 Arachis hypogaea HOM05D004191 ORTHO05D004887 1.4e-72 276.6 187 73.8
Dinv22301 Davidia involucrata HOM05D004191 ORTHO05D004887 3.2e-72 275.4 149 89.3
Peaxi162Scf01475g00001 Petunia axillaris HOM05D004191 ORTHO05D004887 4.7e-71 271.6 187 73.8
AUR62039960 Chenopodium quinoa HOM05D004191 ORTHO05D004887 7.9e-71 270.8 148 86.5
Cpa.g.sc2.173 Carica papaya HOM05D004191 ORTHO05D004887 2.6e-66 255.8 208 60.1
AUR62007507 Chenopodium quinoa HOM05D004191 ORTHO05D004887 4.5e-66 255.0 158 77.2
Peaxi162Scf08257g00003 Petunia axillaris HOM05D004191 ORTHO05D004887 6.1e-63 244.6 187 68.4
Cre03.g145607 Chlamydomonas reinhardtii HOM05D004191 ORTHO05D004887 4.4e-61 238.4 185 60.5
PGSC0003DMG400029125 Solanum tuberosum HOM05D004191 ORTHO05D004887 1.4e-59 233.4 187 64.2
Sp2g07630 Schrenkiella parvula HOM05D004191 ORTHO05D004887 5.0e-57 224.9 124 86.3
AagrBONN_evm.TU.Sc2ySwM_362.1580 Anthoceros agrestis HOM05D004191 ORTHO05D004887 2.3e-54 216.1 127 79.5
Cfa020410 Carpinus fangiana HOM05D004191 ORTHO05D004887 7.7e-50 201.1 103 90.3
PRCOL_00004686 Prasinoderma coloniale HOM05D004191 ORTHO05D004887 3.2e-48 195.7 167 53.9
MCO14G457 Micromonas commoda HOM05D004191 ORTHO05D004887 2.1e-47 193.0 175 53.7
Psat7g161320 Pisum sativum HOM05D004191 ORTHO05D004887 2.7e-47 192.6 139 69.1
COL.COLO4_37956 Corchorus olitorius HOM05D004191 ORTHO05D004887 4.7e-47 191.8 98 89.8
CDE05G2537 Ceratophyllum demersum HOM05D004191 ORTHO05D004887 3.0e-46 189.1 106 86.8
AUR62030012 Chenopodium quinoa HOM05D004191 ORTHO05D004887 9.8e-45 184.1 181 56.9
TWI38G1856 Tripterygium wilfordii HOM05D004191 ORTHO05D004887 9.8e-45 184.1 103 83.5
SEGI_28528 Sequoiadendron giganteum HOM05D004191 ORTHO05D004887 4.5e-42 175.3 98 79.6
Nn5g28123 Nelumbo nucifera HOM05D004191 ORTHO05D004887 2.9e-36 156.0 85 90.6
HanXRQChr11g0332951 Helianthus annuus HOM05D004191 ORTHO05D004887 1.1e-27 127.5 142 51.4
Pp3c2_32190 Physcomitrium patens HOM05D004191 ORTHO05D004887 1.7e-20 103.6 68 69.1
COL.COLO4_37955 Corchorus olitorius HOM05D004191 ORTHO05D004887 1.0e-17 94.4 52 92.3
Cfa020409 Carpinus fangiana HOM05D004191 ORTHO05D004887 1.7e-17 93.6 52 88.5
Haze_09622 Corylus avellana HOM05D004191 ORTHO05D004887 4.3e-16 89.0 49 89.8
Actinidia19733 Actinidia chinensis HOM05D004191 ORTHO05D004887 1.4e-14 84.0 41 95.1
Haze_09618 Corylus avellana HOM05D004191 ORTHO05D004887 4.4e-13 79.0 45 84.4
Rhsim01G0090000 Rhododendron simsii HOM05D004191 ORTHO05D004887 2.9e-12 76.3 76 57.9
Ah.07g199550 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.4e-11 73.9 41 82.9
Ah.12g056770 Amaranthus hybridus HOM05D004191 ORTHO05D004887 1.4e-11 73.9 68 55.9
Medtr4g027400 Medicago truncatula HOM05D004191 ORTHO05D004887 3.2e-11 72.8 47 74.5
Ah.07g199480 Amaranthus hybridus HOM05D004191 ORTHO05D060174 1.6e-10 70.5 39 79.5


User provided reference genes

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