Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000605 Sechium edule HOM05D001925 ORTHO05D005701 8.9e-309 1062.8 536 100.0
ClCG06G003620 Citrullus lanatus HOM05D001925 ORTHO05D005701 1.2e-273 946.0 537 89.9
MELO3C021204.2 Cucumis melo HOM05D001925 ORTHO05D005701 8.2e-270 933.3 537 88.5
CiPaw.01G062800 Carya illinoinensis HOM05D001925 ORTHO05D005701 1.3e-211 740.0 540 70.0
QL04p053597 Quercus lobata HOM05D001925 ORTHO05D005701 6.8e-208 727.6 538 69.3
Cfa003907 Carpinus fangiana HOM05D001925 ORTHO05D005701 2.4e-205 719.2 540 67.8
CsaV3_6G000620 Cucumis sativus L. HOM05D001925 ORTHO05D005701 5.4e-205 718.0 416 87.0
Haze_15511 Corylus avellana HOM05D001925 ORTHO05D005701 1.0e-203 713.8 540 67.6
vmacro13268 Vaccinium macrocarpon HOM05D001925 ORTHO05D005701 1.6e-201 706.4 545 66.8
GSVIVG01008477001 Vitis vinifera HOM05D001925 ORTHO05D005701 3.4e-199 698.7 539 67.5
Rhsim07G0013900 Rhododendron simsii HOM05D001925 ORTHO05D005701 1.3e-198 696.8 545 65.7
Actinidia10039 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.7e-198 696.4 542 66.4
Potri.014G085900 Populus trichocarpa HOM05D001925 ORTHO05D005701 2.2e-198 696.0 539 67.0
Cpa.g.sc11.17 Carica papaya HOM05D001925 ORTHO05D005701 1.4e-197 693.3 539 65.7
CANSAT56G3724 Cannabis sativa HOM05D001925 ORTHO05D005701 2.4e-197 692.6 540 66.9
CSS0009302 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.2e-197 690.6 541 66.0
CSS0022743 Camellia sinensis var. sinensis HOM05D001925 ORTHO05D005701 9.2e-197 690.6 541 66.0
Manes.05G033300 Manihot esculenta HOM05D001925 ORTHO05D005701 9.2e-197 690.6 539 65.5
Sabra14G0062200 Salix brachista HOM05D001925 ORTHO05D005701 2.3e-195 686.0 539 66.8
Ciclev10019660m.g Citrus clementina HOM05D001925 ORTHO05D005701 7.3e-194 681.0 536 66.2
Gohir.A11G089700 Gossypium hirsutum HOM05D001925 ORTHO05D005701 8.1e-193 677.6 537 64.1
TAR636G2317 Trochodendron aralioides HOM05D001925 ORTHO05D005701 1.8e-192 676.4 540 64.8
Thecc.01G357800 Theobroma cacao HOM05D001925 ORTHO05D005701 4.0e-192 675.2 538 65.2
Duzib138G1334 Durio zibethinus HOM05D001925 ORTHO05D005701 4.4e-191 671.8 537 64.1
COL.COLO4_12725 Corchorus olitorius HOM05D001925 ORTHO05D005701 3.8e-190 668.7 537 64.6
Gorai.007G100400 Gossypium raimondii HOM05D001925 ORTHO05D005701 4.9e-190 668.3 537 63.5
Gohir.D11G094000 Gossypium hirsutum HOM05D001925 ORTHO05D005701 3.2e-189 665.6 537 63.5
MD01G1065000 Malus domestica HOM05D001925 ORTHO05D005701 9.2e-189 664.1 539 63.8
Lj6A578T43 Lonicera japonica HOM05D001925 ORTHO05D005701 3.5e-188 662.1 546 62.6
Cc02_g38160 Coffea canephora HOM05D001925 ORTHO05D005701 3.9e-187 658.7 537 63.3
Lj6A572T62 Lonicera japonica HOM05D001925 ORTHO05D005701 2.5e-186 656.0 546 61.9
Nn6g33390 Nelumbo nucifera HOM05D001925 ORTHO05D005701 2.5e-186 656.0 543 62.1
TWI73G0882 Tripterygium wilfordii HOM05D001925 ORTHO05D005701 7.3e-186 654.4 527 62.8
FvH4_7g14490 Fragaria vesca HOM05D001925 ORTHO05D005701 8.1e-185 651.0 503 66.2
RcHm_v2.0_Chr1g0355901 Rosa chinensis HOM05D001925 ORTHO05D005701 1.1e-184 650.6 514 65.8
RcHm_v2.0_Chr2g0161261 Rosa chinensis HOM05D001925 ORTHO05D005701 1.4e-184 650.2 503 66.0
Medtr7g077840 Medicago truncatula HOM05D001925 ORTHO05D005701 2.4e-184 649.4 543 62.1
Atru.chr5.509 Acer truncatum HOM05D001925 ORTHO05D005701 4.0e-184 648.7 539 62.7
Eucgr.L01587 Eucalyptus grandis HOM05D001925 ORTHO05D005701 1.5e-183 646.7 543 61.9
Migut.B01766 Erythranthe guttata HOM05D001925 ORTHO05D005701 2.0e-183 646.4 535 62.4
Psat4g001160 Pisum sativum HOM05D001925 ORTHO05D005701 3.4e-183 645.6 541 61.2
Prupe.2G172000 Prunus persica HOM05D001925 ORTHO05D005701 2.2e-182 642.9 502 65.1
DCAR_007446 Daucus carota HOM05D001925 ORTHO05D005701 3.8e-182 642.1 540 62.2
arahy.Tifrunner.gnm1.ann1.69YTHK Arachis hypogaea HOM05D001925 ORTHO05D005701 1.4e-181 640.2 540 60.4
Ca_07928_v3 Cicer arietinum L. HOM05D001925 ORTHO05D005701 1.9e-181 639.8 540 61.9
MBI04_g28752_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 1.9e-181 639.8 542 61.4
Lj1g0000866 Lotus japonicus HOM05D001925 ORTHO05D005701 1.6e-180 636.7 545 61.1
VMungo1383G1901 Vigna mungo HOM05D001925 ORTHO05D005701 1.6e-180 636.7 540 60.6
THA.LOC104825846 Tarenaya hassleriana HOM05D001925 ORTHO05D005701 2.7e-180 636.0 538 61.2
Oeu015817.1 Olea europaea HOM05D001925 ORTHO05D005701 1.0e-179 634.0 542 61.3
Peaxi162Scf00020g00723 Petunia axillaris HOM05D001925 ORTHO05D005701 2.3e-179 632.9 539 60.7
Phvul.008G061800 Phaseolus vulgaris HOM05D001925 ORTHO05D005701 5.1e-179 631.7 540 60.0
arahy.Tifrunner.gnm1.ann1.9GVB5D Arachis hypogaea HOM05D001925 ORTHO05D005701 1.5e-178 630.2 545 60.6
CAN.G78.90 Capsicum annuum HOM05D001925 ORTHO05D005701 2.5e-178 629.4 538 60.0
arahy.Tifrunner.gnm1.ann1.NC5V2N Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-178 628.2 545 60.7
PGR004G0833 Punica granatum HOM05D001925 ORTHO05D005701 9.6e-178 627.5 542 60.1
HanXRQChr04g0121151 Helianthus annuus HOM05D001925 ORTHO05D005701 4.8e-177 625.2 544 60.3
Glyma.18G234000 Glycine max HOM05D001925 ORTHO05D005701 1.8e-176 623.2 543 60.0
Nitab4.5_0000583g0200 Nicotiana tabacum HOM05D001925 ORTHO05D005701 2.4e-176 622.9 539 60.5
ECA236G3836 Erigeron canadensis HOM05D001925 ORTHO05D005701 5.3e-176 621.7 539 60.3
AT4G29910 Arabidopsis thaliana HOM05D001925 ORTHO05D005701 9.0e-176 620.9 536 59.3
AL7G22330 Arabidopsis lyrata HOM05D001925 ORTHO05D005701 1.5e-175 620.2 540 58.3
Hund16654 Selenicereus undatus HOM05D001925 ORTHO05D005701 2.9e-174 615.9 528 61.2
SGA_v2.0_scaffold4G02302 Striga asiatica HOM05D001925 ORTHO05D005701 6.4e-174 614.8 532 60.7
Sopen01g038540 Solanum pennellii HOM05D001925 ORTHO05D005701 1.4e-173 613.6 538 59.3
PGSC0003DMG400000174 Solanum tuberosum HOM05D001925 ORTHO05D005701 1.9e-173 613.2 546 59.0
SalBow3G0216 Salvia bowleyana HOM05D001925 ORTHO05D005701 2.4e-173 612.8 524 60.3
Solyc01g094760.3 Solanum lycopersicum HOM05D001925 ORTHO05D005701 7.1e-173 611.3 538 59.3
FAN03G1293 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.6e-172 610.1 503 63.2
FAN10G1478 Fragaria x ananassa HOM05D001925 ORTHO05D005701 3.5e-172 609.0 503 62.8
FAN06G1763 Fragaria x ananassa HOM05D001925 ORTHO05D005701 7.9e-172 607.8 503 62.8
FAN10G3665 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.0e-171 607.4 503 62.6
BcaB02g07622 Brassica carinata HOM05D001925 ORTHO05D005701 1.3e-171 607.1 540 58.0
BcaC08g44822 Brassica carinata HOM05D001925 ORTHO05D005701 3.9e-171 605.5 540 57.6
FAN06G3551 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.1e-170 604.0 503 62.4
A07p23240 Brassica napus HOM05D001925 ORTHO05D005701 1.5e-170 603.6 539 57.1
BraA07t29988Z Brassica rapa HOM05D001925 ORTHO05D005701 1.9e-170 603.2 539 57.1
Sp5g05460 Schrenkiella parvula HOM05D001925 ORTHO05D005701 3.3e-170 602.4 540 57.4
C06p24120 Brassica napus HOM05D001925 ORTHO05D005701 4.3e-170 602.1 540 57.4
Eucgr.D01236 Eucalyptus grandis HOM05D001925 ORTHO05D005701 9.6e-170 600.9 541 59.0
BolC6t37570H Brassica oleracea HOM05D001925 ORTHO05D005701 1.3e-169 600.5 540 57.2
Lj7A511T78 Lonicera japonica HOM05D001925 ORTHO05D005701 4.0e-168 595.5 524 59.9
Thhalv10005869m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 1.2e-167 594.0 541 56.7
CARHR237820 Cardamine hirsuta HOM05D001925 ORTHO05D005701 1.5e-167 593.6 529 58.4
FAN01G0375 Fragaria x ananassa HOM05D001925 ORTHO05D005701 4.5e-167 592.0 504 61.9
Ah.05g180520 Amaranthus hybridus HOM05D001925 ORTHO05D001453 8.4e-166 587.8 533 58.7
Lsat_1_v5_gn_7_4881 Lactuca sativa HOM05D001925 ORTHO05D005701 2.1e-164 583.2 533 57.4
EL10Ac1g00402 Beta vulgaris HOM05D001925 ORTHO05D005701 6.0e-164 581.6 546 57.0
BcaB02g07621 Brassica carinata HOM05D001925 ORTHO05D005701 3.0e-163 579.3 540 56.5
Lalb_Chr13g0304081 Lupinus albus HOM05D001925 ORTHO05D005701 3.3e-162 575.9 537 57.0
Nitab4.5_0006018g0050 Nicotiana tabacum HOM05D001925 ORTHO05D005701 1.6e-161 573.5 512 59.0
Aqoxy2G04021 Aquilegia oxysepala HOM05D001925 ORTHO05D005701 2.1e-161 573.2 546 54.0
PSO384G0118 Papaver somniferum HOM05D001925 ORTHO05D005701 3.7e-161 572.4 571 54.5
TPR.G37845 Trifolium pratense HOM05D001925 ORTHO05D005701 6.2e-161 571.6 541 57.3
Aa31LG2G20640 Aethionema arabicum HOM05D001925 ORTHO05D005701 7.1e-157 558.1 535 54.2
Glyma.09G258700 Glycine max HOM05D001925 ORTHO05D005701 3.5e-156 555.8 541 54.7
CDE08G0676 Ceratophyllum demersum HOM05D001925 ORTHO05D005701 4.8e-153 545.4 518 55.4
AUR62004371 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.3e-152 542.0 548 53.1
ATR0068G004 Amborella trichopoda HOM05D001925 ORTHO05D005701 6.9e-152 541.6 500 54.2
AUR62022580 Chenopodium quinoa HOM05D001925 ORTHO05D005701 5.9e-151 538.5 548 53.3
Dinv43827 Davidia involucrata HOM05D001925 ORTHO05D005701 1.4e-144 517.3 414 62.8
Sc01g0003490 Simmondsia chinensis HOM05D001925 ORTHO05D005701 2.6e-130 469.9 424 59.2
Carub.0007s1073 Capsella rubella HOM05D001925 ORTHO05D005701 8.2e-129 464.9 411 57.4
Os03g0759500 Oryza sativa ssp. japonica HOM05D001925 ORTHO05D005701 5.9e-119 432.2 497 48.1
Zm00001eb214490 Zea mays HOM05D001925 ORTHO05D005701 5.2e-115 419.1 491 47.9
SEGI_03119 Sequoiadendron giganteum HOM05D001925 ORTHO05D005701 1.2e-114 417.9 572 40.7
Carub.0002s1689 Capsella rubella HOM05D001925 ORTHO05D005701 3.1e-112 409.8 356 58.4
arahy.Tifrunner.gnm1.ann1.IR4EKV Arachis hypogaea HOM05D001925 ORTHO05D005701 5.7e-106 389.0 319 63.3
PSO339G3045 Papaver somniferum HOM05D001925 ORTHO05D005701 1.3e-105 387.9 497 45.5
BcaC07g40027 Brassica carinata HOM05D001925 ORTHO05D005701 3.7e-105 386.3 463 47.1
arahy.Tifrunner.gnm1.ann1.SID920 Arachis hypogaea HOM05D001925 ORTHO05D005701 5.6e-101 372.5 424 50.9
Oeu050467.2 Olea europaea HOM05D001925 ORTHO05D005701 1.0e-99 368.2 540 43.7
HPP92_019868 Vanilla planifolia HOM05D001925 ORTHO05D005701 1.7e-94 350.9 352 52.6
Potri.001G135975 Populus trichocarpa HOM05D001925 ORTHO05D005701 9.5e-93 345.1 264 65.9
AagrBONN_evm.TU.Sc2ySwM_368.2511 Anthoceros agrestis HOM05D001925 ORTHO05D005701 1.2e-92 344.7 487 41.3
SMO147G0283 Selaginella moellendorffii HOM05D001925 ORTHO05D005701 1.6e-92 344.4 501 38.9
ECA236G4017 Erigeron canadensis HOM05D001925 ORTHO05D005701 2.8e-92 343.6 319 58.0
C08p32440 Brassica napus HOM05D001925 ORTHO05D005701 9.5e-85 318.5 504 39.3
arahy.Tifrunner.gnm1.ann1.D25PMP Arachis hypogaea HOM05D001925 ORTHO05D005701 1.2e-84 318.2 423 45.2
Pp3c17_13600 Physcomitrium patens HOM05D001925 ORTHO05D005701 1.2e-84 318.2 509 38.9
BolC8t50859H Brassica oleracea HOM05D001925 ORTHO05D005701 2.8e-84 317.0 504 39.3
MD07G1135400 Malus domestica HOM05D001925 ORTHO05D005701 2.1e-79 300.8 345 51.9
Mapoly0177s0008 Marchantia polymorpha HOM05D001925 ORTHO05D005701 1.3e-78 298.1 497 36.6
TPR.G26686 Trifolium pratense HOM05D001925 ORTHO05D005701 6.4e-57 226.1 271 49.4
Actinidia20895 Actinidia chinensis HOM05D001925 ORTHO05D005701 1.5e-53 214.9 167 60.5
arahy.Tifrunner.gnm1.ann1.IM3547 Arachis hypogaea HOM05D001925 ORTHO05D005701 3.3e-53 213.8 204 58.3
arahy.Tifrunner.gnm1.ann1.FEJ64N Arachis hypogaea HOM05D001925 ORTHO05D005701 1.6e-52 211.5 198 59.1
Dinv43826 Davidia involucrata HOM05D001925 ORTHO05D005701 8.4e-41 172.6 110 79.1
BraA09t40455Z Brassica rapa HOM05D001925 ORTHO05D005701 6.0e-39 166.4 168 57.1
FvH4_2g10060 Fragaria vesca HOM05D001925 ORTHO05D005701 7.9e-39 166.0 205 47.8
TPR.G16202 Trifolium pratense HOM05D001925 ORTHO05D005701 1.8e-38 164.9 123 69.1
C06p24140 Brassica napus HOM05D001925 ORTHO05D005701 5.9e-34 149.8 113 68.1
MCO11G226 Micromonas commoda HOM05D001925 ORTHO05D005701 9.3e-32 142.5 588 24.8
FAN24G1219 Fragaria x ananassa HOM05D001925 ORTHO05D005701 2.3e-30 137.9 105 69.5
BcaC08g44824 Brassica carinata HOM05D001925 ORTHO05D005701 1.9e-29 134.8 114 61.4
CBR_g58810 Chara braunii HOM05D001925 ORTHO05D005701 3.7e-28 130.6 500 27.2
A09p50040 Brassica napus HOM05D001925 ORTHO05D005701 5.3e-27 126.7 89 70.8
FAN15G3430 Fragaria x ananassa HOM05D001925 ORTHO05D005701 1.2e-26 125.6 104 63.5
FvH4_2g10061 Fragaria vesca HOM05D001925 ORTHO05D005701 1.3e-25 122.1 97 68.0
A09p50030 Brassica napus HOM05D001925 ORTHO05D005701 3.8e-25 120.6 88 64.8
arahy.Tifrunner.gnm1.ann1.ZHBQ27 Arachis hypogaea HOM05D002506 ORTHO05D002879 2.1e-23 114.8 88 71.6
Zm00001eb057980 Zea mays HOM05D001925 ORTHO05D005701 3.6e-23 114.0 221 33.0
PRCOL_00005952 Prasinoderma coloniale HOM05D001925 ORTHO05D005701 1.0e-22 112.5 507 24.5
MBI04_g47116_MAGBIO Magnolia biondii HOM05D001925 ORTHO05D005701 4.5e-18 97.1 235 31.5
C09p49930 Brassica napus HOM05D001925 ORTHO05D039571 2.3e-14 84.7 122 42.6
Thhalv10027287m.g Eutrema salsugineum HOM05D001925 ORTHO05D005701 6.7e-14 83.2 85 45.9
BcaC07g40074 Brassica carinata HOM05D001925 ORTHO05D005701 4.5e-10 70.5 60 58.3
Cre07.g355200 Chlamydomonas reinhardtii HOM05D001925 ORTHO05D005701 5.2e-06 57.0 462 21.2


User provided reference genes

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