Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000556 Sechium edule HOM05D004488 ORTHO05D005374 7.4e-78 293.9 158 100.0
CsaV3_4G014750 Cucumis sativus L. HOM05D004488 ORTHO05D005374 1.6e-59 233.0 159 81.8
ClCG10G009630 Citrullus lanatus HOM05D004488 ORTHO05D005374 1.3e-58 229.9 178 72.5
Sed0014769 Sechium edule HOM05D004488 ORTHO05D005374 1.1e-54 216.9 156 76.3
MELO3C018054.2 Cucumis melo HOM05D004488 ORTHO05D005374 1.8e-52 209.5 165 72.7
Thecc.02G129200 Theobroma cacao HOM05D004488 ORTHO05D005374 2.6e-46 189.1 155 63.2
COL.COLO4_32390 Corchorus olitorius HOM05D004488 ORTHO05D005374 4.4e-46 188.3 152 65.1
Gohir.D13G049600 Gossypium hirsutum HOM05D004488 ORTHO05D005374 5.7e-46 188.0 155 65.8
Gorai.013G055400 Gossypium raimondii HOM05D004488 ORTHO05D005374 5.7e-46 188.0 155 65.8
Manes.10G097800 Manihot esculenta HOM05D004488 ORTHO05D005374 5.7e-46 188.0 152 67.8
Gohir.A13G050800 Gossypium hirsutum HOM05D004488 ORTHO05D005374 7.5e-46 187.6 156 65.4
Cpa.g.sc20.3 Carica papaya HOM05D004488 ORTHO05D005374 1.3e-45 186.8 143 68.5
Manes.07G041900 Manihot esculenta HOM05D004488 ORTHO05D005374 1.8e-44 183.0 155 65.2
Eucgr.G00989 Eucalyptus grandis HOM05D004488 ORTHO05D005374 2.4e-44 182.6 141 66.0
GSVIVG01015661001 Vitis vinifera HOM05D004488 ORTHO05D005374 2.4e-44 182.6 156 61.5
Nn1g05574 Nelumbo nucifera HOM05D004488 ORTHO05D005374 3.1e-44 182.2 155 62.6
Potri.017G043200 Populus trichocarpa HOM05D004488 ORTHO05D005374 4.1e-44 181.8 128 69.5
TWI14G0417 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 4.1e-44 181.8 152 64.5
Sabra17G0029400 Salix brachista HOM05D004488 ORTHO05D005374 5.4e-44 181.4 128 68.8
SalBow6G2847 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.4e-44 181.4 133 70.7
SalBow6G6277 Salvia bowleyana HOM05D004488 ORTHO05D005374 5.4e-44 181.4 133 70.7
CARHR241720 Cardamine hirsuta HOM05D004488 ORTHO05D005374 7.0e-44 181.0 156 60.3
CiPaw.06G157800 Carya illinoinensis HOM05D004488 ORTHO05D005374 7.0e-44 181.0 152 65.8
CANSAT54G1769 Cannabis sativa HOM05D004488 ORTHO05D005374 9.1e-44 180.6 138 68.8
Ciclev10029296m.g Citrus clementina HOM05D004488 ORTHO05D005374 9.1e-44 180.6 162 61.1
Lalb_Chr16g0382951 Lupinus albus HOM05D004488 ORTHO05D005374 1.2e-43 180.3 151 64.9
Hund06459 Selenicereus undatus HOM05D004488 ORTHO05D005374 1.2e-43 180.3 149 61.7
MSTRG.16621 Avicennia marina HOM05D004488 ORTHO05D005374 1.6e-43 179.9 138 65.2
RcHm_v2.0_Chr6g0270971 Rosa chinensis HOM05D004488 ORTHO05D005374 2.7e-43 179.1 130 69.2
CiPaw.05G029400 Carya illinoinensis HOM05D004488 ORTHO05D005374 3.5e-43 178.7 135 67.4
Duzib132G0794 Durio zibethinus HOM05D004488 ORTHO05D005374 4.5e-43 178.3 158 62.0
Medtr2g009630 Medicago truncatula HOM05D004488 ORTHO05D005374 7.7e-43 177.6 155 58.1
AT4G33625 Arabidopsis thaliana HOM05D004488 ORTHO05D005374 1.0e-42 177.2 146 62.3
arahy.Tifrunner.gnm1.ann1.80YYCP Arachis hypogaea HOM05D004488 ORTHO05D005374 1.7e-42 176.4 144 66.0
arahy.Tifrunner.gnm1.ann1.YWY5YF Arachis hypogaea HOM05D004488 ORTHO05D005374 1.7e-42 176.4 144 66.0
Nn5g29881 Nelumbo nucifera HOM05D004488 ORTHO05D005374 1.7e-42 176.4 140 64.3
Thhalv10026279m.g Eutrema salsugineum HOM05D004488 ORTHO05D005374 2.2e-42 176.0 142 63.4
FAN20G0168 Fragaria x ananassa HOM05D004488 ORTHO05D005374 2.9e-42 175.6 151 61.6
PGR042G1599 Punica granatum HOM05D004488 ORTHO05D005374 2.9e-42 175.6 141 66.0
CSS0011276 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 5.0e-42 174.9 142 64.1
unitig_0.g894 Utricularia gibba HOM05D004488 ORTHO05D005374 5.0e-42 174.9 134 64.9
Psat1g214000 Pisum sativum HOM05D004488 ORTHO05D005374 6.5e-42 174.5 154 56.5
THA.LOC104807182 Tarenaya hassleriana HOM05D004488 ORTHO05D005374 6.5e-42 174.5 155 60.6
HPP92_019609 Vanilla planifolia HOM05D004488 ORTHO05D005374 8.5e-42 174.1 156 59.0
BcaC09g52174 Brassica carinata HOM05D004488 ORTHO05D005374 1.1e-41 173.7 143 62.2
A01p04690 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-41 173.7 143 62.2
C01p05080 Brassica napus HOM05D004488 ORTHO05D005374 1.1e-41 173.7 143 62.2
BolC1t00490H Brassica oleracea HOM05D004488 ORTHO05D005374 1.1e-41 173.7 143 62.2
BraA01t00452Z Brassica rapa HOM05D004488 ORTHO05D005374 1.1e-41 173.7 143 62.2
FvH4_2g11740 Fragaria vesca HOM05D004488 ORTHO05D005374 1.1e-41 173.7 134 65.7
Hma1.2p1_0908F.1_g235500 Hydrangea macrophylla HOM05D004488 ORTHO05D005374 1.5e-41 173.3 157 60.5
AL7G17880 Arabidopsis lyrata HOM05D004488 ORTHO05D005374 1.9e-41 172.9 146 60.3
TAR381G0147 Trochodendron aralioides HOM05D004488 ORTHO05D005374 2.5e-41 172.6 128 65.6
CSS0028940 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 3.2e-41 172.2 128 69.5
MD10G1054500 Malus domestica HOM05D004488 ORTHO05D005374 3.2e-41 172.2 138 60.9
Prupe.8G070100 Prunus persica HOM05D004488 ORTHO05D005374 5.5e-41 171.4 157 58.6
Sp7g31350 Schrenkiella parvula HOM05D004488 ORTHO05D005374 5.5e-41 171.4 153 58.8
BcaNung02186 Brassica carinata HOM05D004488 ORTHO05D005374 7.2e-41 171.0 135 64.4
C07p59770 Brassica napus HOM05D004488 ORTHO05D005374 7.2e-41 171.0 135 64.4
BolC7t46423H Brassica oleracea HOM05D004488 ORTHO05D005374 7.2e-41 171.0 135 64.4
Glyma.08G067800 Glycine max HOM05D004488 ORTHO05D005374 7.2e-41 171.0 130 69.2
Atru.chr6.1271 Acer truncatum HOM05D004488 ORTHO05D005374 9.5e-41 170.6 155 59.4
Carub.0007s0681 Capsella rubella HOM05D004488 ORTHO05D005374 9.5e-41 170.6 151 58.3
HanXRQChr16g0514551 Helianthus annuus HOM05D004488 ORTHO05D005374 1.2e-40 170.2 143 58.7
BraA03t15251Z Brassica rapa HOM05D004488 ORTHO05D005374 1.6e-40 169.9 135 63.7
Lalb_Chr05g0217811 Lupinus albus HOM05D004488 ORTHO05D005374 1.6e-40 169.9 147 63.3
CSS0006356 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 2.1e-40 169.5 155 58.7
Glyma.07G182000 Glycine max HOM05D004488 ORTHO05D005374 2.7e-40 169.1 148 63.5
Glyma.13G256500 Glycine max HOM05D004488 ORTHO05D005374 2.7e-40 169.1 147 60.5
Phvul.002G213000 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 2.7e-40 169.1 130 68.5
Sc18g0007070 Simmondsia chinensis HOM05D004488 ORTHO05D005374 2.7e-40 169.1 151 55.0
Migut.B00550 Erythranthe guttata HOM05D004488 ORTHO05D005374 3.6e-40 168.7 149 59.7
Lj4g0013422 Lotus japonicus HOM05D004488 ORTHO05D005374 3.6e-40 168.7 130 66.9
QL11p025232 Quercus lobata HOM05D004488 ORTHO05D005374 3.6e-40 168.7 158 58.9
VMungo0251G0098 Vigna mungo HOM05D004488 ORTHO05D005374 4.7e-40 168.3 130 68.5
Lsat_1_v5_gn_5_110001 Lactuca sativa HOM05D004488 ORTHO05D005374 6.1e-40 167.9 152 55.9
AUR62012885 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.0e-40 167.5 148 59.5
AUR62027109 Chenopodium quinoa HOM05D004488 ORTHO05D005374 8.0e-40 167.5 151 58.9
Dinv16003 Davidia involucrata HOM05D004488 ORTHO05D005374 8.0e-40 167.5 155 56.8
Ah.01g023950 Amaranthus hybridus HOM05D004488 ORTHO05D005374 1.4e-39 166.8 141 61.7
MD05G1047700 Malus domestica HOM05D004488 ORTHO05D005374 1.4e-39 166.8 151 58.3
Oeu029681.1 Olea europaea HOM05D004488 ORTHO05D005374 3.0e-39 165.6 162 56.8
Aqoxy5G01383 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 4.0e-39 165.2 152 57.2
ECA234G4299 Erigeron canadensis HOM05D004488 ORTHO05D005374 4.0e-39 165.2 155 57.4
VMungo0540G1072 Vigna mungo HOM05D004488 ORTHO05D005374 4.0e-39 165.2 155 58.1
SGA_v2.0_scaffold83G26377 Striga asiatica HOM05D004488 ORTHO05D005374 8.8e-39 164.1 143 62.2
EL10Ac9g22071 Beta vulgaris HOM05D004488 ORTHO05D005374 1.2e-38 163.7 131 63.4
ATR0767G217 Amborella trichopoda HOM05D004488 ORTHO05D005374 1.5e-38 163.3 130 61.5
TAR625G0886 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.5e-38 163.3 151 58.3
HanXRQChr10g0289991 Helianthus annuus HOM05D004488 ORTHO05D005374 2.0e-38 162.9 145 60.7
CAN.G997.3 Capsicum annuum HOM05D004488 ORTHO05D005374 3.4e-38 162.2 152 56.6
CDE04G0584 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 4.4e-38 161.8 141 61.0
Actinidia00306 Actinidia chinensis HOM05D004488 ORTHO05D005374 5.7e-38 161.4 122 64.8
Phvul.006G201800 Phaseolus vulgaris HOM05D004488 ORTHO05D005374 7.5e-38 161.0 152 57.9
Nitab4.5_0001636g0030 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.8e-38 160.6 154 55.2
Nitab4.5_0002095g0050 Nicotiana tabacum HOM05D004488 ORTHO05D005374 9.8e-38 160.6 157 56.1
Actinidia02393 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.3e-37 160.2 153 54.9
MBI16_g12465_MAGBIO Magnolia biondii HOM05D004488 ORTHO05D005374 1.7e-37 159.8 149 57.0
Oeu010528.2 Olea europaea HOM05D004488 ORTHO05D005374 2.2e-37 159.5 164 53.7
Peaxi162Scf00299g00625 Petunia axillaris HOM05D004488 ORTHO05D005374 2.2e-37 159.5 154 55.2
Solyc01g105980.3 Solanum lycopersicum HOM05D004488 ORTHO05D005374 2.2e-37 159.5 157 56.1
Sopen01g048360 Solanum pennellii HOM05D004488 ORTHO05D005374 2.2e-37 159.5 157 56.1
Hund00379 Selenicereus undatus HOM05D004488 ORTHO05D005374 4.9e-37 158.3 139 59.0
PSO541G1276 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-36 157.1 128 64.1
PSO675G8955 Papaver somniferum HOM05D004488 ORTHO05D005374 1.1e-36 157.1 128 64.1
Rhsim11G0142300 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.8e-36 156.4 126 61.1
TAR625G0448 Trochodendron aralioides HOM05D004488 ORTHO05D005374 1.8e-36 156.4 119 65.5
Zm00001eb118020 Zea mays HOM05D004488 ORTHO05D005374 1.8e-36 156.4 137 57.7
PGSC0003DMG400033581 Solanum tuberosum HOM05D004488 ORTHO05D005374 2.4e-36 156.0 154 53.2
Lj6g0006499 Lotus japonicus HOM05D004488 ORTHO05D005374 7.0e-36 154.5 159 55.3
Potri.007G115800 Populus trichocarpa HOM05D004488 ORTHO05D005374 9.2e-36 154.1 140 60.7
SEGI_26358 Sequoiadendron giganteum HOM05D004488 ORTHO05D005374 9.2e-36 154.1 124 61.3
PSO210G5219 Papaver somniferum HOM05D004488 ORTHO05D005374 2.0e-35 152.9 154 54.5
Os07g0118300 Oryza sativa ssp. japonica HOM05D004488 ORTHO05D005374 7.7e-35 151.0 135 57.8
CDE01G0475 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 2.3e-34 149.4 147 55.8
vmacro01860 Vaccinium macrocarpon HOM05D004488 ORTHO05D005374 5.0e-34 148.3 155 51.6
Rhsim11G0142400 Rhododendron simsii HOM05D004488 ORTHO05D005374 6.6e-34 147.9 164 50.0
FAN24G0482 Fragaria x ananassa HOM05D004488 ORTHO05D005374 8.6e-34 147.5 148 55.4
Zm00001eb299000 Zea mays HOM05D004488 ORTHO05D005374 4.3e-33 145.2 142 50.0
Aa31sc21G80 Aethionema arabicum HOM05D004488 ORTHO05D005374 3.6e-32 142.1 179 45.8
Rhsim11G0139900 Rhododendron simsii HOM05D004488 ORTHO05D005374 4.7e-32 141.7 147 51.7
DCAR_032425 Daucus carota HOM05D004488 ORTHO05D005374 6.1e-32 141.4 143 56.6
Rhsim11G0140000 Rhododendron simsii HOM05D004488 ORTHO05D005374 1.4e-31 140.2 182 46.7
SMO361G0333 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 1.2e-30 137.1 148 50.7
SMO361G0551 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 4.4e-30 135.2 128 53.1
Cfa005736 Carpinus fangiana HOM05D004488 ORTHO05D005374 3.2e-28 129.0 110 61.8
TPR.G9512 Trifolium pratense HOM05D004488 ORTHO05D005374 5.4e-28 128.3 93 63.4
TWI59G0067 Tripterygium wilfordii HOM05D004488 ORTHO05D005374 5.4e-28 128.3 107 65.4
Cc02_g20910 Coffea canephora HOM05D004488 ORTHO05D005374 3.5e-27 125.6 152 48.7
Aqoxy6G00871 Aquilegia oxysepala HOM05D004488 ORTHO05D005374 3.0e-26 122.5 137 50.4
AagrBONN_evm.TU.Sc2ySwM_117.2605 Anthoceros agrestis HOM05D004488 ORTHO05D005374 8.6e-26 120.9 149 47.0
CSS0017372 Camellia sinensis var. sinensis HOM05D004488 ORTHO05D005374 7.3e-25 117.9 84 67.9
CDE02G2113 Ceratophyllum demersum HOM05D004488 ORTHO05D005374 1.2e-24 117.1 101 57.4
Lj5C230T1 Lonicera japonica HOM05D004488 ORTHO05D005374 1.0e-23 114.0 187 40.6
Pp3c15_10510 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.6e-22 109.4 128 46.1
Haze_10520 Corylus avellana HOM05D004488 ORTHO05D005374 7.5e-22 107.8 96 59.4
Pp3c13_16610 Physcomitrium patens HOM05D004488 ORTHO05D005374 2.2e-21 106.3 152 44.1
Lj9A348T62 Lonicera japonica HOM05D004488 ORTHO05D005374 4.1e-20 102.1 99 52.5
SMO361G0358 Selaginella moellendorffii HOM05D004488 ORTHO05D005374 7.0e-20 101.3 90 57.8
Mapoly0135s0052 Marchantia polymorpha HOM05D004488 ORTHO05D005374 2.3e-18 96.3 96 49.0
Pp3c4_7970 Physcomitrium patens HOM05D004488 ORTHO05D005374 5.0e-18 95.1 152 41.4
Actinidia28030 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.2e-14 84.0 60 71.7
DCAR_001857 Daucus carota HOM05D004488 ORTHO05D005374 2.2e-13 79.7 59 69.5
Actinidia30718 Actinidia chinensis HOM05D004488 ORTHO05D005374 1.1e-12 77.4 138 36.2
Lj9A348T63 Lonicera japonica HOM05D004488 ORTHO05D005374 1.6e-11 73.6 59 66.1
CAN.G755.11 Capsicum annuum HOM05D004488 ORTHO05D005374 1.0e-10 70.9 74 50.0
BraA03t15274Z Brassica rapa HOM05D004488 ORTHO05D005374 1.3e-10 70.5 46 71.7


User provided reference genes

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