Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 1.4e-130 469.5 230 100.0
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 3.5e-44 182.6 204 58.8
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.9e-38 162.9 133 69.2
Sopen02g009090 Solanum pennellii HOM05D008037 ORTHO05D004271 2.9e-38 162.9 108 77.8
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 9.2e-37 157.9 127 70.9
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.6e-36 157.1 134 67.9
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 6.6e-35 151.8 91 85.7
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 9.9e-31 137.9 67 97.0
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.2e-30 136.7 230 42.6
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 2.9e-30 136.3 149 59.1
arahy.Tifrunner.gnm1.ann1.XGYT8C Arachis hypogaea HOM05D008037 ORTHO05D004271 1.4e-29 134.0 67 92.5
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 2.4e-29 133.3 119 63.0
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 1.6e-28 130.6 67 92.5
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 7.8e-28 128.3 223 43.5
Nitab4.5_0027992g0040 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.7e-27 127.1 67 89.6
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 8.7e-27 124.8 188 46.8
arahy.Tifrunner.gnm1.ann1.20TFSQ Arachis hypogaea HOM05D008037 ORTHO05D004271 2.2e-22 110.2 65 84.6
arahy.Tifrunner.gnm1.ann1.P2FSG5 Arachis hypogaea HOM05D008037 ORTHO05D004271 2.2e-22 110.2 65 84.6
Solyc00g500344.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 4.9e-22 109.0 65 83.1
Nitab4.5_0001727g0130 Nicotiana tabacum HOM05D008037 ORTHO05D004271 4.2e-21 105.9 65 80.0
arahy.Tifrunner.gnm1.ann1.ASR258 Arachis hypogaea HOM05D008037 ORTHO05D004271 7.1e-21 105.1 61 86.9
Sc02g0004570 Simmondsia chinensis HOM05D008037 ORTHO05D004271 1.6e-20 104.0 205 38.0
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 6.0e-20 102.1 158 46.8
arahy.Tifrunner.gnm1.ann1.KSIE27 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.7e-19 100.5 98 59.2
arahy.Tifrunner.gnm1.ann1.JURL6Q Arachis hypogaea HOM05D001966 ORTHO05D007227 3.9e-19 99.4 197 40.1
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 3.9e-19 99.4 210 41.9
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 3.9e-19 99.4 192 42.7
Hund25912 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund27633 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund27757 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund27833 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28332 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28440 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28538 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28614 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28956 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund28981 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29028 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29091 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29181 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29249 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29256 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29290 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29318 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29436 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund29853 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund30002 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund30263 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund30448 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund30632 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
Hund30993 Selenicereus undatus HOM05D008037 ORTHO05D004271 1.1e-18 97.8 65 76.9
EL10As10g23963 Beta vulgaris HOM05D008037 ORTHO05D004271 3.3e-18 96.3 65 76.9
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 4.3e-18 95.9 88 60.2
arahy.Tifrunner.gnm1.ann1.LBLK2X Arachis hypogaea HOM05D008037 ORTHO05D004271 2.1e-17 93.6 58 81.0
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 4.8e-17 92.4 85 60.0
BcaB02g11353 Brassica carinata HOM05D007952 ORTHO05D009823 1.1e-16 91.3 145 44.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.1e-16 91.3 86 59.3
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 6.9e-16 88.6 84 59.5
Nitab4.5_0004841g0080 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.0e-15 87.0 93 55.9
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 2.0e-15 87.0 97 57.7
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 2.0e-15 87.0 97 57.7
Nitab4.5_0006502g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.4e-15 86.3 65 69.2
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 5.8e-15 85.5 115 53.9
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 2.2e-14 83.6 160 41.9
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 2.2e-14 83.6 160 41.9
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 2.2e-14 83.6 160 41.9
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 2.2e-14 83.6 160 41.9
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 2.2e-14 83.6 160 41.9
arahy.Tifrunner.gnm1.ann1.KJ09M7 Arachis hypogaea HOM05D008037 ORTHO05D004271 2.9e-14 83.2 142 41.5
Peaxi162Scf00210g00153 Petunia axillaris HOM05D008037 ORTHO05D004271 8.4e-14 81.6 47 83.0
Psat0s1116g0080 Pisum sativum HOM05D004182 ORTHO05D007321 1.1e-13 81.3 108 48.1
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 1.9e-13 80.5 77 59.7
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 2.4e-13 80.1 158 41.1
Solyc09g011150.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 3.2e-13 79.7 38 92.1
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 5.4e-13 79.0 172 36.0
Nitab4.5_0000066g0170 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.6e-12 77.4 56 71.4
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 2.1e-12 77.0 138 44.9
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 2.1e-12 77.0 138 44.9
Nitab4.5_0001249g0070 Nicotiana tabacum HOM05D008016 ORTHO05D010588 2.1e-12 77.0 106 43.4
CsaV3_UNG196490 Cucumis sativus L. HOM05D008016 ORTHO05D010588 2.7e-12 76.6 102 49.0
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 2.7e-12 76.6 60 66.7
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 6.0e-12 75.5 172 36.6
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 1.0e-11 74.7 69 60.9
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.0e-11 74.7 74 59.5
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.3e-11 74.3 84 54.8
Nitab4.5_0012234g0010 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.3e-11 74.3 56 67.9
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 1.8e-11 73.9 135 45.2
FAN26G0971 Fragaria x ananassa HOM05D008037 ORTHO05D004271 1.8e-11 73.9 64 64.1
AL9U11930 Arabidopsis lyrata HOM05D001966 ORTHO05D007227 1.5e-10 70.9 42 76.2
Potri.008G221801 Populus trichocarpa HOM05D008037 ORTHO05D004271 1.5e-10 70.9 32 93.8
arahy.Tifrunner.gnm1.ann1.9FU6Q4 Arachis hypogaea HOM05D009726 ORTHO05D010588 1.9e-10 70.5 66 57.6
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 2.5e-10 70.1 85 51.8
CDE02G0533 Ceratophyllum demersum HOM05D008037 ORTHO05D004271 4.3e-10 69.3 32 93.8
RhsimPtG0005300 Rhododendron simsii HOM05D001966 ORTHO05D007227 5.6e-10 68.9 33 93.9
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 7.4e-10 68.6 74 51.4
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 7.4e-10 68.6 114 43.9
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 7.4e-10 68.6 114 43.9
arahy.Tifrunner.gnm1.ann1.WFJR7S Arachis hypogaea HOM05D008037 ORTHO05D004271 9.6e-10 68.2 31 96.8
arahy.Tifrunner.gnm1.ann1.61DFKT Arachis hypogaea HOM05D008037 ORTHO05D004271 1.3e-09 67.8 49 63.3
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 1.3e-09 67.8 33 90.9
Nitab4.5_0006096g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 1.6e-09 67.4 32 100.0
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 3.7e-09 66.2 38 84.2
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 4.8e-09 65.9 31 100.0
SalBow1G8704 Salvia bowleyana HOM05D001966 ORTHO05D007227 4.8e-09 65.9 105 44.8
Sed0006095 Sechium edule HOM05D010190 ORTHO05D010055 6.2e-09 65.5 34 97.1
arahy.Tifrunner.gnm1.ann1.B37VQ6 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.4e-08 64.3 31 96.8
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 1.4e-08 64.3 85 48.2
Nitab4.5_0008813g0010 Nicotiana tabacum HOM05D007952 ORTHO05D004271 2.4e-08 63.5 31 93.5
Peaxi162Scf00475g00112 Petunia axillaris HOM05D007952 ORTHO05D004271 2.4e-08 63.5 31 90.3
Psat5g119000 Pisum sativum HOM05D009726 ORTHO05D010588 3.1e-08 63.2 66 56.1
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 3.1e-08 63.2 31 96.8
Peaxi162Scf00136g00086 Petunia axillaris HOM05D007952 ORTHO05D004271 4.0e-08 62.8 31 96.8
arahy.Tifrunner.gnm1.ann1.WK7HZX Arachis hypogaea HOM05D009726 ORTHO05D010588 5.3e-08 62.4 80 48.8
CAN.G1648.17 Capsicum annuum HOM05D001966 ORTHO05D007227 5.3e-08 62.4 31 93.5
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 5.3e-08 62.4 121 41.3
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 5.3e-08 62.4 168 35.1
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 9.0e-08 61.6 94 45.7
Solyc03g058260.1 Solanum lycopersicum HOM05D008037 ORTHO05D004271 1.2e-07 61.2 64 51.6
C02p28730 Brassica napus HOM05D008016 ORTHO05D010588 1.5e-07 60.8 55 58.2
Hund28446 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund28585 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund28944 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund28949 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund28959 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29107 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29184 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29242 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29271 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29275 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29279 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29283 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29451 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29497 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29785 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund29912 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund30004 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund30064 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Hund30203 Selenicereus undatus HOM05D008259 ORTHO05D004271 1.5e-07 60.8 31 87.1
Lsat_1_v5_gn_5_36201 Lactuca sativa HOM05D048309 ORTHO05D031508 2.6e-07 60.1 28 100.0
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 3.4e-07 59.7 121 39.7
Glyma.19G187300 Glycine max HOM05D007952 ORTHO05D004271 4.5e-07 59.3 31 90.3
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 7.6e-07 58.5 48 62.5
BNapus_Darmor_BZH_scaffold_69p00020 Brassica napus HOM05D008016 ORTHO05D010588 1.0e-06 58.2 41 65.9
CARHR282370 Cardamine hirsuta HOM05D008016 ORTHO05D010588 1.0e-06 58.2 41 65.9
arahy.Tifrunner.gnm1.ann1.8D90VP Arachis hypogaea HOM05D001966 ORTHO05D007227 1.3e-06 57.8 68 50.0
arahy.Tifrunner.gnm1.ann1.M1FG7L Arachis hypogaea HOM05D008354 ORTHO05D010055 1.3e-06 57.8 29 86.2
BolSC29t60625H Brassica oleracea HOM05D008016 ORTHO05D010588 1.3e-06 57.8 40 65.0
BolSC44t60813H Brassica oleracea HOM05D008016 ORTHO05D010588 1.3e-06 57.8 40 65.0
EL10Ac5g11360 Beta vulgaris HOM05D008037 ORTHO05D004271 1.7e-06 57.4 30 83.3
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 1.7e-06 57.4 72 55.6
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 3.8e-06 56.2 27 92.6
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 3.8e-06 56.2 27 92.6
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 3.8e-06 56.2 27 92.6
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 3.8e-06 56.2 27 92.6
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 3.8e-06 56.2 27 92.6
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 3.8e-06 56.2 27 92.6
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 3.8e-06 56.2 27 92.6
Nitab4.5_0004137g0030 Nicotiana tabacum HOM05D008354 ORTHO05D010055 6.4e-06 55.5 67 47.8
Nitab4.5_0012234g0020 Nicotiana tabacum HOM05D008016 ORTHO05D010055 6.4e-06 55.5 55 56.4


User provided reference genes

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