Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 1.1e-243 846.3 439 100.0
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 4.1e-227 791.2 442 93.4
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.6e-225 783.9 442 92.8
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 8.6e-225 783.5 442 93.2
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 2.0e-218 762.3 439 90.4
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 2.0e-205 719.2 442 84.2
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 6.4e-204 714.1 440 84.1
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 5.4e-203 711.1 440 84.3
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 1.6e-202 709.5 441 84.4
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.6e-202 709.5 445 84.0
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 1.0e-201 706.8 445 82.5
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 3.0e-201 705.3 439 83.1
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 8.6e-201 703.7 447 83.0
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 1.1e-200 703.4 442 82.4
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 2.5e-200 702.2 442 82.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 5.6e-200 701.0 441 82.3
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.6e-199 699.5 443 82.8
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.6e-199 699.5 442 82.4
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 2.1e-199 699.1 442 81.7
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 6.2e-199 697.6 441 83.4
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-198 695.7 440 82.3
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.3e-198 695.7 440 82.3
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 3.1e-198 695.3 445 81.8
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.0e-198 694.9 442 81.2
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 4.0e-198 694.9 439 82.7
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 5.2e-198 694.5 441 81.9
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 5.2e-198 694.5 440 82.5
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 6.8e-198 694.1 439 82.5
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 8.9e-198 693.7 439 81.8
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 8.9e-198 693.7 440 83.2
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 8.9e-198 693.7 442 82.8
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 1.2e-197 693.3 439 82.0
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-197 693.0 445 80.9
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 2.0e-197 692.6 443 81.9
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 2.0e-197 692.6 440 83.0
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 7.5e-197 690.6 440 82.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 9.9e-197 690.3 443 81.9
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 9.9e-197 690.3 437 81.0
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 2.2e-196 689.1 437 81.0
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.2e-196 689.1 447 80.5
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 4.9e-196 688.0 437 79.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 8.3e-196 687.2 440 80.0
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.1e-195 686.8 441 81.9
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 4.1e-195 684.9 438 81.5
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 5.4e-195 684.5 440 81.6
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 7.1e-195 684.1 441 81.9
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 9.2e-195 683.7 440 79.8
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-194 683.3 441 81.0
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.6e-194 682.9 442 81.4
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.1e-194 682.6 441 80.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 3.5e-194 681.8 442 79.9
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.6e-194 681.4 444 81.5
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 7.8e-194 680.6 439 81.1
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 1.0e-193 680.2 441 80.3
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 3.0e-193 678.7 441 81.0
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 3.0e-193 678.7 444 80.9
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 3.9e-193 678.3 439 80.4
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 5.1e-193 677.9 445 81.1
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 6.6e-193 677.6 444 80.0
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 1.1e-192 676.8 440 79.3
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 1.5e-192 676.4 442 79.9
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-192 676.4 445 80.4
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.5e-192 676.4 445 80.4
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 3.3e-192 675.2 442 80.1
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 5.6e-192 674.5 443 79.7
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.3e-192 674.1 398 85.4
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 7.3e-192 674.1 443 80.1
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 7.3e-192 674.1 438 80.1
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 9.5e-192 673.7 438 80.8
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 9.5e-192 673.7 398 85.4
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 9.5e-192 673.7 437 79.9
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.6e-191 672.9 440 80.7
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 2.1e-191 672.5 436 78.9
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 2.8e-191 672.2 443 80.4
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 4.7e-191 671.4 412 83.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 8.1e-191 670.6 439 79.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 1.1e-190 670.2 438 79.7
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 1.4e-190 669.8 445 80.0
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 1.8e-190 669.5 442 79.2
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 2.4e-190 669.1 442 80.1
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 2.4e-190 669.1 421 82.4
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 3.1e-190 668.7 439 78.6
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 3.1e-190 668.7 440 79.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 6.8e-190 667.5 438 79.7
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 445 79.8
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 1.2e-189 666.8 442 79.6
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 1.2e-189 666.8 437 79.2
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.5e-189 666.4 437 79.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 2.0e-189 666.0 442 78.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 3.4e-189 665.2 444 79.3
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 9.9e-189 663.7 442 79.6
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 9.9e-189 663.7 442 78.7
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 2.9e-188 662.1 442 79.6
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.9e-188 662.1 418 81.8
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.9e-188 662.1 418 81.8
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 4.9e-188 661.4 442 79.4
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 8.4e-188 660.6 442 79.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 5.4e-187 657.9 437 78.3
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 2.1e-186 656.0 413 82.1
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 1.0e-185 653.7 436 77.3
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.3e-185 653.3 442 78.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.3e-185 653.3 442 78.3
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 5.1e-185 651.4 437 77.8
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 8.7e-185 650.6 439 79.3
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.5e-184 649.8 446 76.7
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 5.3e-182 641.3 435 75.4
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.5e-181 639.8 410 79.8
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.8e-180 635.2 433 76.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 7.1e-179 630.9 429 75.3
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 4.6e-178 628.2 396 78.5
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 5.1e-177 624.8 493 67.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 5.1e-177 624.8 438 74.7
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 6.6e-177 624.4 428 74.5
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 6.6e-177 624.4 479 70.6
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.5e-176 622.5 442 75.1
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 3.3e-176 622.1 436 74.1
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 5.6e-176 621.3 390 82.1
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 8.4e-172 607.4 442 74.2
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.0e-169 600.5 440 73.6
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 2.1e-167 592.8 382 81.7
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.9e-160 569.7 442 70.4
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 7.4e-160 567.8 394 78.7
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 2.4e-158 562.8 360 83.9
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.8e-157 558.1 368 81.0
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 5.3e-150 535.0 414 65.9
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 6.5e-148 528.1 376 68.6
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 5.5e-147 525.0 370 67.8
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 1.4e-145 520.4 305 86.6
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 7.4e-144 514.6 364 68.4
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 3.1e-142 509.2 378 67.2
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 4.1e-142 508.8 378 67.2
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.5e-141 506.9 385 66.0
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.7e-140 503.4 380 65.5
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 2.2e-140 503.1 369 67.5
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 2.2e-140 503.1 361 71.2
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 8.5e-140 501.1 389 65.6
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.4e-139 500.4 364 66.2
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 2.5e-139 499.6 376 65.4
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 7.0e-134 481.5 395 60.0
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 2.6e-133 479.6 429 59.2
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 1.9e-131 473.4 317 77.0
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 1.0e-129 467.6 392 59.2
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 6.3e-127 458.4 358 63.1
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 5.3e-118 428.7 365 61.9
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 1.2e-98 364.4 359 55.7
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 7.3e-91 338.6 301 60.1
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.8e-81 307.4 215 72.6
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 6.4e-71 272.3 187 78.6
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.1e-67 261.5 329 43.8
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 3.0e-60 236.9 139 87.8
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 1.1e-59 235.0 198 61.1
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 2.4e-57 227.3 123 86.2
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 4.2e-54 216.5 160 67.5
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.0e-39 168.7 162 54.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 9.3e-38 162.2 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 1.9e-35 154.5 111 75.7
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 2.0e-32 144.4 81 88.9
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 1.6e-29 134.8 80 82.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 3.0e-28 130.6 112 57.1
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 1.3e-26 125.2 80 71.2
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 2.6e-19 100.9 101 51.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 8.2e-18 95.9 51 82.4
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 9.4e-14 82.4 94 48.9
ClCG07G011950 Citrullus lanatus HOM05D002468 ORTHO05D005371 5.3e-09 66.6 64 70.3
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 2.9e-07 60.8 35 80.0


User provided reference genes

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