Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000469 Sechium edule HOM05D010190 ORTHO05D009823 1.4e-234 815.8 397 100.0
Sed0006309 Sechium edule HOM05D010190 ORTHO05D009823 2.0e-228 795.4 419 94.3
Sed0014465 Sechium edule HOM05D010190 ORTHO05D004271 7.8e-201 703.7 419 86.2
Sed0021589 Sechium edule HOM05D008016 ORTHO05D004271 1.5e-42 177.9 167 60.5
SabraPtG0006400 Salix brachista HOM05D012647 ORTHO05D014727 1.0e-38 165.2 124 66.9
BolSC35t60714H Brassica oleracea HOM05D008016 ORTHO05D004271 2.2e-38 164.1 232 49.1
BraSC103t45496Z Brassica rapa HOM05D008016 ORTHO05D004271 2.2e-38 164.1 232 49.1
Sed0000516 Sechium edule HOM05D008037 ORTHO05D004271 9.3e-37 158.7 134 67.9
Gohir.1Z049482 Gossypium hirsutum HOM05D008016 ORTHO05D004271 5.3e-32 142.9 79 87.3
BolSC29t60557H Brassica oleracea HOM05D008016 ORTHO05D010588 8.5e-30 135.6 126 63.5
BolSC46t60968H Brassica oleracea HOM05D008016 ORTHO05D010588 8.5e-30 135.6 126 63.5
BraSC103t45418Z Brassica rapa HOM05D008016 ORTHO05D010588 8.5e-30 135.6 126 63.5
BraSC25t45901Z Brassica rapa HOM05D008016 ORTHO05D010588 8.5e-30 135.6 126 63.5
C04p22520 Brassica napus HOM05D008016 ORTHO05D004271 1.9e-29 134.4 112 69.6
BolSC45t60920H Brassica oleracea HOM05D008016 ORTHO05D010588 1.2e-28 131.7 97 76.3
BraSC25t45922Z Brassica rapa HOM05D008016 ORTHO05D010588 1.2e-28 131.7 97 76.3
Atru.chr9.2550 Acer truncatum HOM05D010190 ORTHO05D009823 2.1e-28 131.0 67 94.0
Nitab4.5_0005831g0110 Nicotiana tabacum HOM05D008016 ORTHO05D011667 3.9e-27 126.7 81 77.8
RcHm_v2.0_Chr4g0392721 Rosa chinensis HOM05D008016 ORTHO05D004271 6.7e-27 125.9 79 79.7
Nitab4.5_0007400g0090 Nicotiana tabacum HOM05D008016 ORTHO05D004271 1.1e-26 125.2 80 80.0
Ca_02733_v3 Cicer arietinum L. HOM05D008016 ORTHO05D009823 5.7e-26 122.9 193 45.1
Nitab4.5_0001170g0110 Nicotiana tabacum HOM05D008016 ORTHO05D004271 5.7e-26 122.9 79 77.2
Nitab4.5_0001170g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 2.2e-25 120.9 384 32.8
Lsat_1_v5_gn_4_63021 Lactuca sativa HOM05D007952 ORTHO05D009823 4.1e-24 116.7 206 42.2
Sed0006095 Sechium edule HOM05D010190 ORTHO05D010055 4.1e-24 116.7 61 95.1
vmacro22395 Vaccinium macrocarpon HOM05D008016 ORTHO05D004271 1.2e-23 115.2 126 59.5
vmacro22420 Vaccinium macrocarpon HOM05D008016 ORTHO05D010055 1.2e-23 115.2 126 59.5
COL.COLO4_33462 Corchorus olitorius HOM05D008016 ORTHO05D004271 7.7e-23 112.5 73 82.2
BraSC59t46557Z Brassica rapa HOM05D008016 ORTHO05D004271 1.7e-22 111.3 86 66.3
BolSC44t60833H Brassica oleracea HOM05D008016 ORTHO05D004271 3.2e-21 107.1 55 92.7
Lalb_Chr15g0080721 Lupinus albus HOM05D008016 ORTHO05D004271 2.7e-20 104.0 58 86.2
arahy.Tifrunner.gnm1.ann1.8WK9L8 Arachis hypogaea HOM05D020811 ORTHO05D018485 3.6e-20 103.6 56 82.1
arahy.Tifrunner.gnm1.ann1.TT5YJH Arachis hypogaea HOM05D007952 ORTHO05D009823 6.1e-20 102.8 97 58.8
arahy.Tifrunner.gnm1.ann1.XUIM66 Arachis hypogaea HOM05D007952 ORTHO05D009823 7.9e-20 102.4 99 57.6
BolSC35t60682H Brassica oleracea HOM05D008016 ORTHO05D010588 7.9e-20 102.4 125 54.4
arahy.Tifrunner.gnm1.ann1.60YYL0 Arachis hypogaea HOM05D010190 ORTHO05D009823 1.4e-19 101.7 75 72.0
PGSC0003DMG400028997 Solanum tuberosum HOM05D007952 ORTHO05D009823 8.8e-19 99.0 98 58.2
Migut.A01208 Erythranthe guttata HOM05D008016 ORTHO05D004271 2.0e-18 97.8 58 81.0
Gohir.D07G151450 Gossypium hirsutum HOM05D008016 ORTHO05D004271 2.0e-18 97.8 128 53.1
Oeu012768.1 Olea europaea HOM05D007952 ORTHO05D009823 3.3e-18 97.1 72 70.8
Solyc06g043035.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 4.4e-18 96.7 104 52.9
Lalb_Chr03g0039361 Lupinus albus HOM05D008016 ORTHO05D004271 5.7e-18 96.3 54 85.2
Gohir.A09G103364 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.4e-18 95.9 54 83.3
Aa31csc553G20 Aethionema arabicum HOM05D010190 ORTHO05D021180 1.3e-17 95.1 130 48.5
Gohir.A13G086605 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.3e-17 95.1 54 83.3
Nitab4.5_0001170g0050 Nicotiana tabacum HOM05D010190 ORTHO05D011667 1.7e-17 94.7 138 43.5
Gohir.A02G134102 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.4e-16 91.7 45 97.8
Gohir.A07G174766 Gossypium hirsutum HOM05D008016 ORTHO05D004271 1.8e-16 91.3 50 88.0
MD00G1140100 Malus domestica HOM05D008016 ORTHO05D004271 1.2e-15 88.6 50 86.0
HPP92_028386 Vanilla planifolia HOM05D009726 ORTHO05D010055 4.5e-15 86.7 61 75.4
Gohir.A09G101825 Gossypium hirsutum HOM05D008016 ORTHO05D004271 7.7e-15 85.9 44 90.9
TPR.G32110 Trifolium pratense HOM05D006259 ORTHO05D007804 7.7e-15 85.9 61 75.4
Migut.D01400 Erythranthe guttata HOM05D007952 ORTHO05D009823 1.3e-14 85.1 44 90.9
RcHm_v2.0_Chr7g0221131 Rosa chinensis HOM05D008016 ORTHO05D004271 2.2e-14 84.3 47 89.4
Gohir.1Z049580 Gossypium hirsutum HOM05D008016 ORTHO05D004271 6.5e-14 82.8 41 97.6
BolSC29t60497H Brassica oleracea HOM05D008016 ORTHO05D010588 1.1e-13 82.0 97 56.7
BolC7t41700H Brassica oleracea HOM05D010190 ORTHO05D009823 4.2e-13 80.1 61 70.5
FAN22G1916 Fragaria x ananassa HOM05D008037 ORTHO05D004271 9.4e-13 79.0 63 69.8
Nitab4.5_0012234g0070 Nicotiana tabacum HOM05D008931 ORTHO05D010933 2.1e-12 77.8 36 94.4
CAN.G676.33 Capsicum annuum HOM05D004316 ORTHO05D005149 2.7e-12 77.4 90 54.4
Nitab4.5_0004137g0070 Nicotiana tabacum HOM05D008037 ORTHO05D004271 3.6e-12 77.0 45 82.2
Sc17g0002440 Simmondsia chinensis HOM05D010190 ORTHO05D000119 4.7e-12 76.6 59 71.2
Nitab4.5_0001761g0030 Nicotiana tabacum HOM05D008931 ORTHO05D010933 8.0e-12 75.9 36 91.7
BolSC49t61153H Brassica oleracea HOM05D008016 ORTHO05D010588 3.0e-11 73.9 157 42.0
Glyma.15G274900 Glycine max HOM05D008016 ORTHO05D004271 3.0e-11 73.9 44 79.5
Peaxi162Scf00080g00520 Petunia axillaris HOM05D008037 ORTHO05D004271 4.0e-11 73.6 55 69.1
Nitab4.5_0005637g0050 Nicotiana tabacum HOM05D011380 ORTHO05D016005 5.2e-11 73.2 33 97.0
Solyc11g044665.1 Solanum lycopersicum HOM05D008016 ORTHO05D004271 5.2e-11 73.2 69 59.4
BraSC179t45783Z Brassica rapa HOM05D008016 ORTHO05D004271 1.1e-10 72.0 59 64.4
arahy.Tifrunner.gnm1.ann1.RE2PS1 Arachis hypogaea HOM05D007952 ORTHO05D009823 2.0e-10 71.2 33 100.0
ClCG02G009760 Citrullus lanatus HOM05D001966 ORTHO05D000002 2.6e-10 70.9 49 75.5
DCAR_001145 Daucus carota HOM05D001966 ORTHO05D010055 3.3e-10 70.5 39 89.7
ECA246G1432 Erigeron canadensis HOM05D007952 ORTHO05D009823 3.3e-10 70.5 46 73.9
vmacro22417 Vaccinium macrocarpon HOM05D008354 ORTHO05D010055 3.3e-10 70.5 39 89.7
Sopen10g016570 Solanum pennellii HOM05D008037 ORTHO05D004271 7.5e-10 69.3 171 36.3
arahy.Tifrunner.gnm1.ann1.JWI1UU Arachis hypogaea HOM05D009726 ORTHO05D010588 9.7e-10 68.9 62 61.3
Nitab4.5_0000317g0030 Nicotiana tabacum HOM05D010190 ORTHO05D009823 9.7e-10 68.9 38 81.6
SabraMtG0006000 Salix brachista HOM05D012647 ORTHO05D014727 9.7e-10 68.9 37 81.1
arahy.Tifrunner.gnm1.ann1.9FU6Q4 Arachis hypogaea HOM05D009726 ORTHO05D010588 1.3e-09 68.6 57 64.9
Peaxi162Scf00608g00016 Petunia axillaris HOM05D000680 ORTHO05D005619 2.2e-09 67.8 49 67.3
Sc05g0004050 Simmondsia chinensis HOM05D001966 ORTHO05D007227 2.2e-09 67.8 72 62.5
CAN.G134.6 Capsicum annuum HOM05D008037 ORTHO05D004271 3.7e-09 67.0 84 50.0
Nitab4.5_0000002g0310 Nicotiana tabacum HOM05D010190 ORTHO05D004271 4.8e-09 66.6 38 86.8
Peaxi162Scf00687g00611 Petunia axillaris HOM05D001966 ORTHO05D010055 6.3e-09 66.2 37 86.5
Manes.07G046200 Manihot esculenta HOM05D008037 ORTHO05D004271 8.2e-09 65.9 53 66.0
SHI36397 Sapria himalayana HOM05D008037 ORTHO05D004271 8.2e-09 65.9 45 82.2
CsaV3_4G029840 Cucumis sativus L. HOM05D010190 ORTHO05D009823 1.1e-08 65.5 54 63.0
Nitab4.5_0001761g0150 Nicotiana tabacum HOM05D008037 ORTHO05D004271 1.1e-08 65.5 83 49.4
arahy.Tifrunner.gnm1.ann1.7D98FQ Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-08 65.1 36 88.9
arahy.Tifrunner.gnm1.ann1.U095GY Arachis hypogaea HOM05D000963 ORTHO05D004715 1.4e-08 65.1 36 88.9
EL10As10g23964 Beta vulgaris HOM05D001966 ORTHO05D010055 1.4e-08 65.1 35 91.4
CiPaw.14G028800 Carya illinoinensis HOM05D008016 ORTHO05D004271 1.4e-08 65.1 42 76.2
Hma1.2p1_0594F.1_g185800 Hydrangea macrophylla HOM05D001966 ORTHO05D010986 1.4e-08 65.1 35 91.4
Nn029s41587 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.4e-08 65.1 43 76.7
Nn064s42224 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.4e-08 65.1 43 76.7
Nn206s45068 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.4e-08 65.1 43 76.7
Nn219s45283 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.4e-08 65.1 43 76.7
Atru.chr13.2454 Acer truncatum HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
arahy.Tifrunner.gnm1.ann1.0845WK Arachis hypogaea HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
arahy.Tifrunner.gnm1.ann1.88RRM9 Arachis hypogaea HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nn031s41604 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nn233s45560 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nn241s45689 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nn6g33131 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nn6g33484 Nelumbo nucifera HOM05D007952 ORTHO05D009823 1.8e-08 64.7 37 86.5
Nitab4.5_0001628g0020 Nicotiana tabacum HOM05D010190 ORTHO05D004271 1.8e-08 64.7 37 81.1
arahy.Tifrunner.gnm1.ann1.HDQ4NC Arachis hypogaea HOM05D007952 ORTHO05D009823 2.4e-08 64.3 37 83.8
Nitab4.5_0004552g0010 Nicotiana tabacum HOM05D000796 ORTHO05D009823 2.4e-08 64.3 50 64.0
BcaC05g27379 Brassica carinata HOM05D008016 ORTHO05D021751 3.1e-08 63.9 42 78.6
ECA247G0757 Erigeron canadensis HOM05D000006 ORTHO05D000001 4.1e-08 63.5 30 96.7
arahy.Tifrunner.gnm1.ann1.FN06MZ Arachis hypogaea HOM05D000533 ORTHO05D006151 5.3e-08 63.2 34 88.2
CAN.G100.35 Capsicum annuum HOM05D008016 ORTHO05D010588 5.3e-08 63.2 30 93.3
MBI08_g48225_MAGBIO Magnolia biondii HOM05D008037 ORTHO05D004271 5.3e-08 63.2 45 80.0
Lalb_Chr20g0115041 Lupinus albus HOM05D008016 ORTHO05D004271 7.0e-08 62.8 58 60.3
Solyc11g021160.1 Solanum lycopersicum HOM05D001966 ORTHO05D010055 7.0e-08 62.8 39 82.1
Lj1g0013448 Lotus japonicus HOM05D007952 ORTHO05D009823 1.2e-07 62.0 29 100.0
arahy.Tifrunner.gnm1.ann1.4P2RM7 Arachis hypogaea HOM05D005034 ORTHO05D006234 1.6e-07 61.6 37 83.8
arahy.Tifrunner.gnm1.ann1.WK7HZX Arachis hypogaea HOM05D009726 ORTHO05D010588 1.6e-07 61.6 57 61.4
Phvul.009G038333 Phaseolus vulgaris HOM05D007952 ORTHO05D009823 1.6e-07 61.6 37 83.8
Nn1g08228 Nelumbo nucifera HOM05D007952 ORTHO05D009823 2.6e-07 60.8 37 81.1
Oeu011728.3 Olea europaea HOM05D002681 ORTHO05D003372 2.6e-07 60.8 29 96.6
CAN.G1186.47 Capsicum annuum HOM05D007952 ORTHO05D009823 3.5e-07 60.5 67 55.2
FAN26G1474 Fragaria x ananassa HOM05D001966 ORTHO05D010986 3.5e-07 60.5 33 90.9
Lsat_1_v5_gn_4_68181 Lactuca sativa HOM05D008016 ORTHO05D010055 3.5e-07 60.5 54 61.1
CSS0039937 Camellia sinensis var. sinensis HOM05D007952 ORTHO05D009823 4.5e-07 60.1 52 65.4
Nitab4.5_0006502g0020 Nicotiana tabacum HOM05D001966 ORTHO05D010055 4.5e-07 60.1 39 74.4
Sc11g0004340 Simmondsia chinensis HOM05D008490 ORTHO05D010725 4.5e-07 60.1 37 73.0
Sopen11g014330 Solanum pennellii HOM05D000743 ORTHO05D000580 4.5e-07 60.1 45 64.4
Medtr3g035635 Medicago truncatula HOM05D007952 ORTHO05D009823 5.9e-07 59.7 29 96.6
Medtr4g006040 Medicago truncatula HOM05D008037 ORTHO05D009823 5.9e-07 59.7 29 96.6
SGA_v2.0_scaffold255G45479 Striga asiatica HOM05D015035 ORTHO05D010933 5.9e-07 59.7 41 68.3
Actinidia34941 Actinidia chinensis HOM05D008490 ORTHO05D010725 7.7e-07 59.3 63 50.8
CAN.G1298.21 Capsicum annuum HOM05D000445 ORTHO05D000314 1.0e-06 58.9 39 76.9
Lsat_1_v5_gn_2_98441 Lactuca sativa HOM05D008016 ORTHO05D004271 1.0e-06 58.9 41 70.7
TAR626G1139 Trochodendron aralioides HOM05D000301 ORTHO05D000303 1.0e-06 58.9 41 75.6
VMungo0720G2248 Vigna mungo HOM05D001966 ORTHO05D007227 1.0e-06 58.9 58 58.6
VMungo1233G0001 Vigna mungo HOM05D001966 ORTHO05D010986 1.0e-06 58.9 58 58.6
arahy.Tifrunner.gnm1.ann1.54SFA9 Arachis hypogaea HOM05D008037 ORTHO05D004271 1.3e-06 58.5 47 72.3
BolSC44t60812H Brassica oleracea HOM05D007952 ORTHO05D009823 1.3e-06 58.5 27 100.0
DCAR_004958 Daucus carota HOM05D007952 ORTHO05D009823 1.3e-06 58.5 27 100.0
Lsat_1_v5_gn_4_99801 Lactuca sativa HOM05D007952 ORTHO05D009823 1.3e-06 58.5 27 100.0
SHI27036 Sapria himalayana HOM05D001966 ORTHO05D010986 1.3e-06 58.5 37 78.4
PGSC0003DMG400035391 Solanum tuberosum HOM05D007952 ORTHO05D009823 1.3e-06 58.5 27 100.0
Zm00001eb129280 Zea mays HOM05D034373 ORTHO05D021180 1.3e-06 58.5 32 90.6
Nitab4.5_0000002g0300 Nicotiana tabacum HOM05D001966 ORTHO05D010055 1.7e-06 58.2 35 80.0
TPR.G384 Trifolium pratense HOM05D010190 ORTHO05D010933 1.7e-06 58.2 96 38.5
arahy.Tifrunner.gnm1.ann1.840LER Arachis hypogaea HOM05D000533 ORTHO05D002807 3.8e-06 57.0 26 96.2
Nitab4.5_0008665g0040 Nicotiana tabacum HOM05D001070 ORTHO05D002096 3.8e-06 57.0 35 80.0
EL10Ac6g14593 Beta vulgaris HOM05D001966 ORTHO05D010055 5.0e-06 56.6 30 90.0
C06p10020 Brassica napus HOM05D010190 ORTHO05D009823 5.0e-06 56.6 60 58.3
Lj4g0016112 Lotus japonicus HOM05D007952 ORTHO05D009823 5.0e-06 56.6 29 93.1
Medtr3g028290 Medicago truncatula HOM05D007952 ORTHO05D009823 5.0e-06 56.6 29 89.7
arahy.Tifrunner.gnm1.ann1.9E5EUV Arachis hypogaea HOM05D000388 ORTHO05D000473 6.5e-06 56.2 37 78.4
Lsat_1_v5_gn_2_20561 Lactuca sativa HOM05D010488 ORTHO05D011667 6.5e-06 56.2 26 96.2
Medtr0002s0270 Medicago truncatula HOM05D007952 ORTHO05D009823 6.5e-06 56.2 27 96.3


User provided reference genes

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