Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000368 Sechium edule HOM05D004860 ORTHO05D006366 1.2e-197 693.0 349 100.0
ClCG05G005460 Citrullus lanatus HOM05D004860 ORTHO05D006366 1.1e-171 606.7 365 85.2
MELO3C006570.2 Cucumis melo HOM05D004860 ORTHO05D006366 4.3e-171 604.7 327 90.5
CsaV3_3G013760 Cucumis sativus L. HOM05D004860 ORTHO05D006366 3.1e-169 598.6 364 84.3
Potri.008G202300 Populus trichocarpa HOM05D004860 ORTHO05D006366 5.5e-158 561.2 346 80.6
RcHm_v2.0_Chr4g0418381 Rosa chinensis HOM05D004860 ORTHO05D006366 3.6e-157 558.5 349 79.1
PGR031G2771 Punica granatum HOM05D004860 ORTHO05D006366 6.1e-157 557.8 327 83.2
FAN07G1456 Fragaria x ananassa HOM05D004860 ORTHO05D006366 7.9e-157 557.4 349 77.7
Thecc.04G221400 Theobroma cacao HOM05D004860 ORTHO05D006366 7.9e-157 557.4 342 80.7
FvH4_4g14470 Fragaria vesca HOM05D004860 ORTHO05D006366 1.0e-156 557.0 349 78.5
FAN22G2324 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.4e-156 556.6 349 77.7
FAN12G3962 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.8e-156 556.2 349 78.5
Duzib268G1873 Durio zibethinus HOM05D004860 ORTHO05D006366 2.3e-156 555.8 325 84.0
Gohir.A05G316600 Gossypium hirsutum HOM05D004860 ORTHO05D006366 5.1e-156 554.7 341 79.5
CANSAT78G2493 Cannabis sativa HOM05D004860 ORTHO05D006366 2.0e-155 552.7 329 82.1
QL06p004255 Quercus lobata HOM05D004860 ORTHO05D006366 3.3e-155 552.0 326 82.5
Actinidia40192 Actinidia chinensis HOM05D004860 ORTHO05D006366 5.7e-155 551.2 327 82.3
Eucgr.D02658 Eucalyptus grandis HOM05D004860 ORTHO05D006366 5.7e-155 551.2 362 77.9
MD16G1183500 Malus domestica HOM05D004860 ORTHO05D006366 5.7e-155 551.2 327 82.6
CSS0038220 Camellia sinensis var. sinensis HOM05D004860 ORTHO05D006366 9.7e-155 550.4 344 80.8
TWI73G0632 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.7e-154 549.7 328 81.7
MD13G1182900 Malus domestica HOM05D004860 ORTHO05D006366 2.4e-153 545.8 350 79.4
TAR636G2819 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.4e-153 545.8 351 78.6
CiPaw.02G092200 Carya illinoinensis HOM05D004860 ORTHO05D006366 3.1e-153 545.4 325 81.5
Manes.15G022900 Manihot esculenta HOM05D004860 ORTHO05D006366 9.1e-153 543.9 349 77.4
Ciclev10005293m.g Citrus clementina HOM05D004860 ORTHO05D006366 2.0e-152 542.7 328 82.3
Duzib212G0960 Durio zibethinus HOM05D004860 ORTHO05D006366 2.0e-152 542.7 331 81.0
Gorai.009G340700 Gossypium raimondii HOM05D004860 ORTHO05D006366 4.5e-152 541.6 355 76.1
Carub.0006s1737 Capsella rubella HOM05D004860 ORTHO05D006366 7.7e-152 540.8 329 79.3
Thhalv10013904m.g Eutrema salsugineum HOM05D004860 ORTHO05D006366 7.7e-152 540.8 325 80.6
Haze_00965 Corylus avellana HOM05D004860 ORTHO05D006366 1.0e-151 540.4 404 69.3
Atru.chr4.2574 Acer truncatum HOM05D004860 ORTHO05D006366 1.7e-151 539.7 355 77.2
Lj4g0005512 Lotus japonicus HOM05D004860 ORTHO05D006366 5.0e-151 538.1 351 78.6
Nn4g26191 Nelumbo nucifera HOM05D004860 ORTHO05D006366 6.5e-151 537.7 339 78.5
Glyma.17G017300 Glycine max HOM05D004860 ORTHO05D006366 8.5e-151 537.3 348 77.6
AT5G19050 Arabidopsis thaliana HOM05D004860 ORTHO05D006366 1.1e-150 537.0 326 79.4
THA.LOC104822311 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 4.2e-150 535.0 328 78.4
TPR.G20138 Trifolium pratense HOM05D004860 ORTHO05D006366 7.2e-150 534.3 355 74.9
AL6G30430 Arabidopsis lyrata HOM05D004860 ORTHO05D006366 9.4e-150 533.9 326 79.1
BolC3t13554H Brassica oleracea HOM05D004860 ORTHO05D006366 9.4e-150 533.9 325 79.4
Glyma.07G256800 Glycine max HOM05D004860 ORTHO05D006366 1.2e-149 533.5 348 77.0
Sp6g25330 Schrenkiella parvula HOM05D004860 ORTHO05D006366 2.7e-149 532.3 325 80.0
Aa31LG11G10670 Aethionema arabicum HOM05D004860 ORTHO05D006366 3.6e-149 531.9 336 77.7
BcaB01g05289 Brassica carinata HOM05D004860 ORTHO05D006366 4.7e-149 531.6 325 79.1
CARHR193940 Cardamine hirsuta HOM05D004860 ORTHO05D006366 4.7e-149 531.6 325 78.8
BraA03t10247Z Brassica rapa HOM05D004860 ORTHO05D006366 1.4e-148 530.0 325 78.8
THA.LOC104818790 Tarenaya hassleriana HOM05D004860 ORTHO05D006366 1.8e-148 529.6 333 78.1
Ah.07g203980 Amaranthus hybridus HOM05D004860 ORTHO05D006366 3.9e-148 528.5 343 77.3
COL.COLO4_21645 Corchorus olitorius HOM05D004860 ORTHO05D006366 3.9e-148 528.5 307 83.4
Solyc01g080140.3 Solanum lycopersicum HOM05D004860 ORTHO05D006366 3.9e-148 528.5 335 77.9
arahy.Tifrunner.gnm1.ann1.PDW3QZ Arachis hypogaea HOM05D004860 ORTHO05D006366 8.8e-148 527.3 351 75.5
Medtr4g117310 Medicago truncatula HOM05D004860 ORTHO05D006366 8.8e-148 527.3 351 76.4
Sopen01g031920 Solanum pennellii HOM05D004860 ORTHO05D006366 8.8e-148 527.3 335 77.9
Dinv38393 Davidia involucrata HOM05D001530 ORTHO05D004168 1.1e-147 526.9 320 81.9
arahy.Tifrunner.gnm1.ann1.K193BP Arachis hypogaea HOM05D004860 ORTHO05D006366 1.5e-147 526.6 329 79.0
BcaB01g04878 Brassica carinata HOM05D004860 ORTHO05D006366 1.5e-147 526.6 325 78.5
Lalb_Chr07g0177321 Lupinus albus HOM05D004860 ORTHO05D006366 1.5e-147 526.6 351 76.6
BolC9t58612H Brassica oleracea HOM05D004860 ORTHO05D006366 2.6e-147 525.8 325 79.1
BcaC04g18624 Brassica carinata HOM05D004860 ORTHO05D006366 5.7e-147 524.6 325 78.8
C09p57430 Brassica napus HOM05D004860 ORTHO05D006366 5.7e-147 524.6 325 79.1
EL10Ac3g06352 Beta vulgaris HOM05D004860 ORTHO05D006366 1.7e-146 523.1 369 71.5
BcaB08g36622 Brassica carinata HOM05D004860 ORTHO05D006366 2.2e-146 522.7 325 78.2
A10p20640 Brassica napus HOM05D004860 ORTHO05D006366 3.7e-146 521.9 326 78.8
Phvul.003G093000 Phaseolus vulgaris HOM05D004860 ORTHO05D006366 3.7e-146 521.9 324 79.3
Nitab4.5_0001247g0010 Nicotiana tabacum HOM05D004860 ORTHO05D006366 1.1e-145 520.4 332 78.3
TAR365G0160 Trochodendron aralioides HOM05D004860 ORTHO05D006366 2.4e-145 519.2 324 78.4
BraA10t44127Z Brassica rapa HOM05D004860 ORTHO05D006366 3.1e-145 518.8 326 78.5
C03p10800 Brassica napus HOM05D004860 ORTHO05D006366 2.6e-144 515.8 318 79.2
GSVIVG01017886001 Vitis vinifera HOM05D004860 ORTHO05D006366 2.6e-144 515.8 307 83.4
SalBow5G0733 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.5e-144 515.4 354 72.9
SalBow5G4413 Salvia bowleyana HOM05D004860 ORTHO05D006366 3.5e-144 515.4 354 72.9
Psat4g031440 Pisum sativum HOM05D004860 ORTHO05D006366 7.7e-144 514.2 350 74.9
Cfa015580 Carpinus fangiana HOM05D004860 ORTHO05D006366 1.7e-143 513.1 306 81.7
Migut.N00151 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.9e-143 512.3 332 76.2
Oeu029304.1 Olea europaea HOM05D004860 ORTHO05D006366 2.9e-143 512.3 325 76.6
Ah.13g074180 Amaranthus hybridus HOM05D004860 ORTHO05D006366 8.5e-143 510.8 327 76.5
Ca_21591_v3 Cicer arietinum L. HOM05D004860 ORTHO05D006366 4.2e-142 508.4 298 80.5
Lj3C761T9 Lonicera japonica HOM05D004860 ORTHO05D006366 2.1e-141 506.1 322 76.4
Cc03_g03100 Coffea canephora HOM05D004860 ORTHO05D006366 3.0e-140 502.3 305 78.7
ECA240G4413 Erigeron canadensis HOM05D004860 ORTHO05D006366 4.0e-140 501.9 298 79.9
MSTRG.24756 Avicennia marina HOM05D004860 ORTHO05D006366 8.8e-140 500.7 345 73.3
PSO407G0112 Papaver somniferum HOM05D004860 ORTHO05D006366 8.8e-140 500.7 335 75.8
Gohir.D05G318100 Gossypium hirsutum HOM05D004860 ORTHO05D006366 1.2e-139 500.4 341 73.6
MBI17_g12009_MAGBIO Magnolia biondii HOM05D004860 ORTHO05D006366 2.0e-139 499.6 325 77.8
PSO170G1688 Papaver somniferum HOM05D004860 ORTHO05D006366 2.6e-139 499.2 335 75.8
Peaxi162Scf01766g00011 Petunia axillaris HOM05D004860 ORTHO05D006366 3.3e-139 498.8 340 74.1
Aqoxy2G03261 Aquilegia oxysepala HOM05D004860 ORTHO05D006366 5.7e-139 498.0 311 78.5
A03p09270 Brassica napus HOM05D004860 ORTHO05D006366 1.7e-138 496.5 310 78.4
Cpa.g.sc16.26 Carica papaya HOM05D004860 ORTHO05D006366 4.8e-138 495.0 326 75.8
AUR62030079 Chenopodium quinoa HOM05D004860 ORTHO05D006366 4.8e-138 495.0 284 83.8
CiPaw.01G159800 Carya illinoinensis HOM05D004860 ORTHO05D006366 8.2e-138 494.2 325 76.0
Prupe.1G151200 Prunus persica HOM05D004860 ORTHO05D006366 5.9e-136 488.0 310 78.7
HanXRQChr09g0248101 Helianthus annuus HOM05D004860 ORTHO05D006366 7.7e-136 487.6 289 81.3
CDE02G3435 Ceratophyllum demersum HOM05D004860 ORTHO05D006366 1.0e-135 487.3 331 72.2
CAN.G183.30 Capsicum annuum HOM05D004860 ORTHO05D006366 1.7e-135 486.5 351 72.9
Lsat_1_v5_gn_7_67361 Lactuca sativa HOM05D004860 ORTHO05D006366 2.9e-135 485.7 348 71.3
Zm00001eb303280 Zea mays HOM05D004860 ORTHO05D006366 3.2e-134 482.3 310 75.5
SEGI_28969 Sequoiadendron giganteum HOM05D004860 ORTHO05D006366 2.1e-133 479.6 301 76.4
Os07g0211800 Oryza sativa ssp. japonica HOM05D004860 ORTHO05D006366 2.7e-133 479.2 286 79.0
unitig_8.g2879 Utricularia gibba HOM05D004860 ORTHO05D006366 2.0e-131 473.0 300 75.3
Hund12197 Selenicereus undatus HOM05D004860 ORTHO05D000105 1.3e-130 470.3 270 83.0
Actinidia12990 Actinidia chinensis HOM05D004860 ORTHO05D006366 9.1e-129 464.2 361 69.0
AUR62038223 Chenopodium quinoa HOM05D004860 ORTHO05D006366 1.2e-128 463.8 270 83.3
Lj6A565G28 Lonicera japonica HOM05D004860 ORTHO05D006366 3.2e-126 455.7 298 79.9
Dinv44480 Davidia involucrata HOM05D001530 ORTHO05D004168 4.2e-126 455.3 319 73.0
Migut.G00288 Erythranthe guttata HOM05D004860 ORTHO05D006366 2.3e-124 449.5 346 67.3
Sabra08G0159200 Salix brachista HOM05D004860 ORTHO05D006366 5.7e-123 444.9 292 75.7
Rhsim04G0207200 Rhododendron simsii HOM05D004860 ORTHO05D006366 5.0e-119 431.8 340 67.9
AagrBONN_evm.TU.Sc2ySwM_117.2400 Anthoceros agrestis HOM05D004860 ORTHO05D006366 1.6e-117 426.8 285 71.2
Nn1g02160 Nelumbo nucifera HOM05D004860 ORTHO05D006366 2.1e-117 426.4 295 73.9
SMO119G0283 Selaginella moellendorffii HOM05D004860 ORTHO05D006366 2.8e-117 426.0 285 73.7
vmacro08274 Vaccinium macrocarpon HOM05D004860 ORTHO05D006366 3.0e-116 422.5 325 70.5
Pp3c4_4720 Physcomitrium patens HOM05D004860 ORTHO05D006366 4.4e-115 418.7 283 68.6
TWI53G0789 Tripterygium wilfordii HOM05D004860 ORTHO05D006366 1.4e-113 413.7 262 79.4
Mapoly0095s0018 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.6e-112 410.2 280 69.6
Manes.03G184900 Manihot esculenta HOM05D004860 ORTHO05D006366 2.7e-112 409.5 274 75.2
ATR0626G115 Amborella trichopoda HOM05D004860 ORTHO05D006366 8.3e-106 387.9 257 75.5
SGA_v2.0_scaffold166G38376 Striga asiatica HOM05D004860 ORTHO05D006366 1.7e-103 380.2 303 67.0
SalBow2G3077 Salvia bowleyana HOM05D004860 ORTHO05D006366 7.8e-96 354.8 314 58.3
Oeu017197.2 Olea europaea HOM05D004860 ORTHO05D006366 1.4e-89 334.0 226 73.5
Sc13g0003950 Simmondsia chinensis HOM05D004860 ORTHO05D006366 5.4e-89 332.0 223 76.7
VMungo1215G0515 Vigna mungo HOM05D004860 ORTHO05D006366 5.4e-89 332.0 243 72.8
Actinidia23474 Actinidia chinensis HOM05D004860 ORTHO05D006366 4.0e-68 262.7 344 47.7
Eucgr.B01143 Eucalyptus grandis HOM05D004860 ORTHO05D006366 3.8e-66 256.1 153 77.8
FAN17G0307 Fragaria x ananassa HOM05D004860 ORTHO05D006366 1.1e-62 244.6 138 80.4
HPP92_027344 Vanilla planifolia HOM05D004860 ORTHO05D006366 4.0e-60 236.1 172 70.3
SHI00370 Sapria himalayana HOM05D004860 ORTHO05D000023 3.8e-58 229.6 139 80.6
Nitab4.5_0002954g0030 Nicotiana tabacum HOM05D004860 ORTHO05D006366 2.7e-56 223.4 155 75.5
Hund22791 Selenicereus undatus HOM05D004860 ORTHO05D006366 3.4e-51 206.5 130 72.3
VMungo1215G0712 Vigna mungo HOM05D004860 ORTHO05D006366 1.1e-49 201.4 106 84.0
Cc02_g31730 Coffea canephora HOM05D004860 ORTHO05D006366 1.1e-46 191.4 113 74.3
PRCOL_00003006 Prasinoderma coloniale HOM05D004860 ORTHO05D006366 1.1e-38 164.9 276 41.7
CBR_g23274 Chara braunii HOM05D004860 ORTHO05D006366 1.4e-36 157.9 129 59.7
Cre06.g283034 Chlamydomonas reinhardtii HOM05D004860 ORTHO05D006366 1.3e-34 151.4 304 32.9
Cc09_g08330 Coffea canephora HOM05D004860 ORTHO05D006366 2.5e-33 147.1 110 62.7
Cc01_g03740 Coffea canephora HOM05D004860 ORTHO05D006366 1.3e-29 134.8 115 57.4
SHI00369 Sapria himalayana HOM05D004860 ORTHO05D006366 3.1e-28 130.2 188 45.7
Cfa023854 Carpinus fangiana HOM05D004860 ORTHO05D126341 9.4e-25 118.6 288 33.0
Mapoly0174s0021 Marchantia polymorpha HOM05D004860 ORTHO05D006366 1.0e-23 115.2 84 63.1
DCAR_002416 Daucus carota HOM05D004860 ORTHO05D006366 8.8e-23 112.1 84 61.9
THA.LOC104820105 Tarenaya hassleriana HOM05D001530 ORTHO05D004168 7.7e-19 99.0 53 90.6
A02p05180 Brassica napus HOM05D004860 ORTHO05D006366 5.0e-18 96.3 91 57.1
HPP92_027343 Vanilla planifolia HOM05D004860 ORTHO05D006366 5.0e-18 96.3 71 66.2
BraA02t05478Z Brassica rapa HOM05D004860 ORTHO05D006366 6.5e-18 95.9 93 58.1
DCAR_030597 Daucus carota HOM05D004860 ORTHO05D006366 2.1e-16 90.9 50 80.0
CBR_g23273 Chara braunii HOM05D004860 ORTHO05D006366 1.4e-15 88.2 79 51.9
Lj6C565T4 Lonicera japonica HOM05D004860 ORTHO05D006366 4.0e-15 86.7 51 70.6
Cc00_g00380 Coffea canephora HOM05D004860 ORTHO05D006366 5.7e-14 82.8 51 72.5
Cc11_g00440 Coffea canephora HOM05D004860 ORTHO05D005444 1.1e-09 68.6 37 78.4
QL06p004359 Quercus lobata HOM05D004860 ORTHO05D337479 1.2e-08 65.1 58 55.2
HPP92_017189 Vanilla planifolia HOM05D004860 ORTHO05D006366 2.0e-06 57.8 31 83.9
BcaB07g33046 Brassica carinata HOM05D004860 ORTHO05D005738 7.5e-06 55.8 50 58.0


User provided reference genes

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