Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000357 Sechium edule HOM05D003781 ORTHO05D004299 2.3e-179 632.1 315 100.0
CsaV3_3G037920 Cucumis sativus L. HOM05D003781 ORTHO05D004299 2.3e-139 499.2 306 80.4
MELO3C009536.2 Cucumis melo HOM05D003781 ORTHO05D004299 2.8e-137 492.3 306 79.1
ClCG10G018370 Citrullus lanatus HOM05D003781 ORTHO05D004299 9.4e-125 450.7 264 81.4
Sed0026509 Sechium edule HOM05D003781 ORTHO05D004299 2.8e-121 439.1 295 76.3
Dinv31756 Davidia involucrata HOM05D003781 ORTHO05D004299 5.2e-99 365.2 293 62.5
Dinv12337 Davidia involucrata HOM05D003781 ORTHO05D004299 9.8e-98 360.9 300 61.0
Actinidia03891 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-95 353.6 296 60.1
Actinidia04001 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.6e-95 353.6 296 60.1
GSVIVG01037869001 Vitis vinifera HOM05D003781 ORTHO05D004299 2.0e-95 353.2 312 56.7
GSVIVG01029568001 Vitis vinifera HOM05D003781 ORTHO05D004299 1.7e-94 350.1 268 63.1
TAR636G1975 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.5e-93 347.1 271 63.8
Prupe.7G095100 Prunus persica HOM05D003781 ORTHO05D004299 9.5e-93 344.4 306 58.8
Potri.016G070800 Populus trichocarpa HOM05D003781 ORTHO05D004299 2.8e-92 342.8 288 60.8
QL04p046781 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-91 340.1 293 59.4
QL07p036815 Quercus lobata HOM05D003781 ORTHO05D004299 1.8e-91 340.1 291 59.1
Duzib093G1220 Durio zibethinus HOM05D003781 ORTHO05D004299 2.3e-91 339.7 306 56.9
TAR633G0070 Trochodendron aralioides HOM05D003781 ORTHO05D004299 2.3e-91 339.7 271 62.0
FAN02G2206 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.0e-90 336.7 289 58.8
Lalb_Chr18g0056351 Lupinus albus HOM05D003781 ORTHO05D004299 2.0e-90 336.7 276 60.1
Atru.chr8.1371 Acer truncatum HOM05D003781 ORTHO05D004299 3.4e-90 335.9 266 62.0
MD14G1038400 Malus domestica HOM05D003781 ORTHO05D004299 3.4e-90 335.9 292 59.2
vmacro07475 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 5.8e-90 335.1 295 60.3
Lj1g0015362 Lotus japonicus HOM05D003781 ORTHO05D004299 1.3e-89 334.0 276 61.6
QL04p047257 Quercus lobata HOM05D003781 ORTHO05D004299 2.2e-89 333.2 290 58.6
FvH4_6g20270 Fragaria vesca HOM05D003781 ORTHO05D004299 2.9e-89 332.8 304 55.9
TWI74G1316 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 3.7e-89 332.4 285 58.9
Ciclev10012131m.g Citrus clementina HOM05D003781 ORTHO05D004299 4.9e-89 332.0 290 57.6
FAN14G3039 Fragaria x ananassa HOM05D003781 ORTHO05D004299 4.9e-89 332.0 304 55.6
Gohir.D09G131000 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.1e-88 330.9 302 56.6
Gorai.006G149700 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.1e-88 330.9 302 56.6
Haze_20190 Corylus avellana HOM05D003781 ORTHO05D004299 1.4e-88 330.5 271 62.0
CiPaw.09G020700 Carya illinoinensis HOM05D003781 ORTHO05D004299 5.4e-88 328.6 287 56.8
RcHm_v2.0_Chr1g0331051 Rosa chinensis HOM05D003781 ORTHO05D004299 5.4e-88 328.6 273 61.5
RcHm_v2.0_Chr3g0475861 Rosa chinensis HOM05D003781 ORTHO05D004299 7.1e-88 328.2 273 61.2
Haze_19697 Corylus avellana HOM05D003781 ORTHO05D004299 7.8e-87 324.7 268 63.1
DCAR_009179 Daucus carota HOM05D003781 ORTHO05D004299 2.3e-86 323.2 286 58.4
Thecc.05G103800 Theobroma cacao HOM05D003781 ORTHO05D004299 5.1e-86 322.0 297 56.6
MD12G1039800 Malus domestica HOM05D003781 ORTHO05D004299 6.6e-86 321.6 297 56.9
PGR142G3605 Punica granatum HOM05D003781 ORTHO05D004299 1.9e-85 320.1 295 55.3
FAN05G1631 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.5e-85 319.7 325 52.6
FAN05G5379 Fragaria x ananassa HOM05D003781 ORTHO05D004299 2.5e-85 319.7 325 52.6
Sabra16G0070900 Salix brachista HOM05D003781 ORTHO05D004299 3.3e-85 319.3 297 57.6
Sabra16G0073100 Salix brachista HOM05D003781 ORTHO05D004299 3.3e-85 319.3 297 57.6
arahy.Tifrunner.gnm1.ann1.GQX3NW Arachis hypogaea HOM05D003781 ORTHO05D004299 5.6e-85 318.5 279 59.9
TWI53G0607 Tripterygium wilfordii HOM05D003781 ORTHO05D004299 9.5e-85 317.8 286 56.3
arahy.Tifrunner.gnm1.ann1.WYX60D Arachis hypogaea HOM05D003781 ORTHO05D004299 2.1e-84 316.6 275 59.3
CANSAT01G0129 Cannabis sativa HOM05D003781 ORTHO05D004299 2.1e-84 316.6 297 54.5
Manes.08G033100 Manihot esculenta HOM05D003781 ORTHO05D004299 3.6e-84 315.8 288 56.6
COL.COLO4_29580 Corchorus olitorius HOM05D004248 ORTHO05D004978 4.7e-84 315.5 297 56.2
FAN09G0267 Fragaria x ananassa HOM05D003781 ORTHO05D004299 1.1e-83 314.3 325 52.0
Nn2g14295 Nelumbo nucifera HOM05D003781 ORTHO05D004299 1.8e-83 313.5 271 57.6
Peaxi162Scf00586g00012 Petunia axillaris HOM05D003781 ORTHO05D004299 1.8e-83 313.5 287 56.1
Cc06_g06510 Coffea canephora HOM05D003781 ORTHO05D004299 3.1e-83 312.8 267 57.3
PGSC0003DMG400021351 Solanum tuberosum HOM05D003781 ORTHO05D004299 3.1e-83 312.8 294 54.4
MBI04_g47396_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 5.2e-83 312.0 279 57.3
Nitab4.5_0000020g0070 Nicotiana tabacum HOM05D003781 ORTHO05D004299 6.8e-83 311.6 282 57.4
Nitab4.5_0001122g0140 Nicotiana tabacum HOM05D003781 ORTHO05D004299 8.9e-83 311.2 282 57.4
Cpa.g.sc10.172 Carica papaya HOM05D003781 ORTHO05D004299 1.2e-82 310.8 288 56.9
Ca_03587_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 1.2e-82 310.8 272 57.7
CAN.G170.93 Capsicum annuum HOM05D003781 ORTHO05D004299 2.0e-82 310.1 287 55.7
Medtr0036s0040 Medicago truncatula HOM05D003781 ORTHO05D004299 3.4e-82 309.3 273 57.9
Hund10883 Selenicereus undatus HOM05D003781 ORTHO05D004299 3.4e-82 309.3 268 57.5
Solyc01g007160.4 Solanum lycopersicum HOM05D003781 ORTHO05D004299 4.4e-82 308.9 282 55.3
MBI04_g43653_MAGBIO Magnolia biondii HOM05D003781 ORTHO05D004299 7.6e-82 308.1 289 56.1
PGR142G3230 Punica granatum HOM05D003781 ORTHO05D004299 9.9e-82 307.8 273 57.9
MSTRG.5897 Avicennia marina HOM05D003781 ORTHO05D004299 1.3e-81 307.4 286 56.3
HanXRQChr01g0025751 Helianthus annuus HOM05D003781 ORTHO05D004299 1.3e-81 307.4 272 55.1
Lsat_1_v5_gn_6_113040 Lactuca sativa HOM05D003781 ORTHO05D004299 2.9e-81 306.2 280 56.1
Sopen01g003140 Solanum pennellii HOM05D003781 ORTHO05D004299 3.8e-81 305.8 271 56.5
Ca_17838_v3 Cicer arietinum L. HOM05D003781 ORTHO05D004299 4.9e-81 305.4 272 57.7
EL10Ac5g12476 Beta vulgaris HOM05D003781 ORTHO05D004299 1.9e-80 303.5 281 56.6
Lsat_1_v5_gn_1_58161 Lactuca sativa HOM05D003781 ORTHO05D004299 1.9e-80 303.5 288 53.5
PSO541G6247 Papaver somniferum HOM05D003781 ORTHO05D004299 2.4e-80 303.1 276 56.9
Psat5g299360 Pisum sativum HOM05D003781 ORTHO05D004299 2.4e-80 303.1 270 58.9
Oeu034092.2 Olea europaea HOM05D003781 ORTHO05D004299 4.1e-80 302.4 300 53.0
Oeu052621.2 Olea europaea HOM05D003781 ORTHO05D004299 7.1e-80 301.6 270 54.8
Aqoxy1G00670 Aquilegia oxysepala HOM05D003781 ORTHO05D004299 9.2e-80 301.2 311 52.4
Phvul.001G195300 Phaseolus vulgaris HOM05D003781 ORTHO05D004299 1.2e-79 300.8 269 55.8
Sopen01g052480 Solanum pennellii HOM05D003781 ORTHO05D004299 1.6e-79 300.4 294 53.1
Thhalv10027115m.g Eutrema salsugineum HOM05D003781 ORTHO05D004299 6.0e-79 298.5 280 54.3
ECA248G2654 Erigeron canadensis HOM05D003781 ORTHO05D004299 1.0e-78 297.7 272 54.0
Actinidia31110 Actinidia chinensis HOM05D003781 ORTHO05D004299 1.3e-78 297.4 277 54.9
Migut.J00706 Erythranthe guttata HOM05D003781 ORTHO05D004299 1.3e-78 297.4 277 54.9
CiPaw.10G017000 Carya illinoinensis HOM05D003781 ORTHO05D004299 2.3e-78 296.6 292 54.8
AUR62036398 Chenopodium quinoa HOM05D003781 ORTHO05D004299 2.3e-78 296.6 268 55.2
VMungo1383G2961 Vigna mungo HOM05D003781 ORTHO05D004299 3.0e-78 296.2 268 56.0
Glyma.19G200100 Glycine max HOM05D003781 ORTHO05D004299 5.1e-78 295.4 269 55.8
Solyc01g110330.3 Solanum lycopersicum HOM05D003781 ORTHO05D004299 6.6e-78 295.0 288 52.8
Hma1.2p1_0381F.1_g140000 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.1e-77 294.3 286 53.1
VMungo0464G1804 Vigna mungo HOM05D003781 ORTHO05D004299 1.1e-77 294.3 269 56.5
PSO675G8110 Papaver somniferum HOM05D003781 ORTHO05D004299 1.9e-77 293.5 267 56.6
Glyma.19G199100 Glycine max HOM05D003781 ORTHO05D004299 2.5e-77 293.1 269 55.4
THA.LOC104809956 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 7.3e-77 291.6 299 52.2
Sp7g29260 Schrenkiella parvula HOM05D003781 ORTHO05D004299 9.6e-77 291.2 280 53.2
SGA_v2.0_scaffold13G06629 Striga asiatica HOM05D003781 ORTHO05D004299 2.8e-76 289.7 268 55.6
AT4G31400 Arabidopsis thaliana HOM05D003781 ORTHO05D004299 3.6e-76 289.3 287 52.6
AUR62030753 Chenopodium quinoa HOM05D003781 ORTHO05D004299 4.7e-76 288.9 285 51.9
HanXRQChr16g0532941 Helianthus annuus HOM05D003781 ORTHO05D004299 4.7e-76 288.9 265 54.7
A08p18640 Brassica napus HOM05D003781 ORTHO05D004299 6.2e-76 288.5 269 55.0
CARHR239280 Cardamine hirsuta HOM05D003781 ORTHO05D004299 8.1e-76 288.1 278 53.2
Ah.04g152350 Amaranthus hybridus HOM05D003781 ORTHO05D000148 1.1e-75 287.7 271 55.7
Medtr2g102470 Medicago truncatula HOM05D003781 ORTHO05D004299 1.4e-75 287.3 269 55.4
CDE08G1154 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 3.1e-75 286.2 292 50.3
Lj2A35G43 Lonicera japonica HOM05D003781 ORTHO05D004299 4.0e-75 285.8 273 53.1
BolC7t46313H Brassica oleracea HOM05D003781 ORTHO05D004299 1.2e-74 284.3 270 54.1
Hma1.2p1_0064F.1_g034690 Hydrangea macrophylla HOM05D003781 ORTHO05D004299 1.5e-74 283.9 240 59.2
C07p58580 Brassica napus HOM05D003781 ORTHO05D004299 2.6e-74 283.1 270 54.1
A03p60680 Brassica napus HOM05D003781 ORTHO05D004299 3.4e-74 282.7 270 54.4
CSS0048701 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 7.6e-74 281.6 271 53.5
SalBow8G0162 Salvia bowleyana HOM05D003781 ORTHO05D004299 9.9e-74 281.2 295 51.2
Aa31LG2G18950 Aethionema arabicum HOM05D003781 ORTHO05D004299 1.3e-73 280.8 279 53.4
BraA03t15109Z Brassica rapa HOM05D003781 ORTHO05D004299 1.7e-73 280.4 270 54.8
BraA08t33827Z Brassica rapa HOM05D003781 ORTHO05D004299 1.7e-73 280.4 272 53.7
BcaNung04576 Brassica carinata HOM05D003781 ORTHO05D004299 2.9e-73 279.6 270 53.7
Eucgr.K02618 Eucalyptus grandis HOM05D003781 ORTHO05D004299 2.9e-73 279.6 233 60.1
CDE06G0061 Ceratophyllum demersum HOM05D003781 ORTHO05D004299 6.4e-73 278.5 292 49.3
Carub.0007s0916 Capsella rubella HOM05D003781 ORTHO05D004299 1.1e-72 277.7 267 52.8
unitig_26.g10109 Utricularia gibba HOM05D003781 ORTHO05D004299 7.1e-72 275.0 270 54.1
Rhsim09G0141200 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.6e-71 273.9 349 45.8
C03p88000 Brassica napus HOM05D003781 ORTHO05D004299 2.1e-71 273.5 269 52.0
TPR.G37223 Trifolium pratense HOM05D003781 ORTHO05D004299 2.7e-71 273.1 259 54.8
Rhsim03G0064900 Rhododendron simsii HOM05D003781 ORTHO05D004299 4.6e-71 272.3 272 54.8
RhsimUnG0138100 Rhododendron simsii HOM05D003781 ORTHO05D004299 9.6e-69 264.6 321 48.3
Os04g0498900 Oryza sativa ssp. japonica HOM05D003781 ORTHO05D004299 9.9e-66 254.6 272 49.6
BolC3t21111H Brassica oleracea HOM05D003781 ORTHO05D004299 2.9e-65 253.1 270 51.9
ATR0772G111 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.2e-64 249.6 310 46.1
vmacro10320 Vaccinium macrocarpon HOM05D003781 ORTHO05D004299 3.2e-64 249.6 229 54.6
HPP92_023079 Vanilla planifolia HOM05D003781 ORTHO05D004299 4.2e-64 249.2 283 48.8
AL7G20660 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 4.6e-63 245.7 243 53.9
PSO675G6385 Papaver somniferum HOM05D003781 ORTHO05D004299 3.3e-61 239.6 222 55.9
Zm00001eb078390 Zea mays HOM05D003781 ORTHO05D004299 4.3e-61 239.2 291 45.4
Zm00001eb078410 Zea mays HOM05D003781 ORTHO05D004299 4.3e-61 239.2 291 45.4
Zm00001eb078400 Zea mays HOM05D003781 ORTHO05D004299 1.3e-60 237.7 291 45.4
Nitab4.5_0002858g0040 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.6e-60 237.3 238 55.5
BcaB03g12691 Brassica carinata HOM05D003781 ORTHO05D004299 2.4e-59 233.4 226 52.7
BcaC01g01091 Brassica carinata HOM05D003781 ORTHO05D004299 4.0e-59 232.6 226 52.7
CSS0029856 Camellia sinensis var. sinensis HOM05D003781 ORTHO05D004299 5.8e-58 228.8 229 52.4
Pp3c11_11100 Physcomitrium patens HOM05D003781 ORTHO05D004299 2.2e-57 226.9 303 44.6
Gohir.A09G134500 Gossypium hirsutum HOM05D003781 ORTHO05D004299 8.4e-57 224.9 302 43.7
Lj1A1051T45 Lonicera japonica HOM05D003781 ORTHO05D004299 1.9e-56 223.8 230 50.9
Nitab4.5_0008187g0010 Nicotiana tabacum HOM05D003781 ORTHO05D004299 3.9e-54 216.1 283 44.5
SEGI_09697 Sequoiadendron giganteum HOM05D003781 ORTHO05D004299 2.5e-53 213.4 316 38.9
THA.LOC104816619 Tarenaya hassleriana HOM05D003781 ORTHO05D004299 9.6e-53 211.5 220 50.5
SMO367G1200 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 2.9e-49 199.9 299 40.8
Cc02_g09440 Coffea canephora HOM05D003781 ORTHO05D004299 1.4e-48 197.6 266 44.4
AUR62040627 Chenopodium quinoa HOM05D003781 ORTHO05D004299 1.4e-43 181.0 151 56.3
BcaNung01523 Brassica carinata HOM05D003781 ORTHO05D004299 2.4e-43 180.3 203 48.8
ATR1127G225 Amborella trichopoda HOM05D003781 ORTHO05D004299 3.8e-41 172.9 234 42.7
SMO343G0088 Selaginella moellendorffii HOM05D003781 ORTHO05D004299 1.9e-40 170.6 250 41.6
RhsimUnG0138400 Rhododendron simsii HOM05D003781 ORTHO05D004299 1.6e-39 167.5 185 49.7
Sc07g0006420 Simmondsia chinensis HOM05D003781 ORTHO05D004299 3.3e-37 159.8 109 63.3
HanXRQChr15g0472861 Helianthus annuus HOM05D003781 ORTHO05D004299 5.0e-33 146.0 117 56.4
TPR.G33838 Trifolium pratense HOM05D003781 ORTHO05D004299 1.4e-32 144.4 166 48.8
AagrBONN_evm.TU.Sc2ySwM_228.4048 Anthoceros agrestis HOM05D003781 ORTHO05D004299 2.5e-32 143.7 450 27.1
HanXRQChr03g0072391 Helianthus annuus HOM05D003781 ORTHO05D004299 1.2e-31 141.4 183 44.3
Mapoly0033s0057 Marchantia polymorpha HOM05D003781 ORTHO05D004299 3.0e-30 136.7 157 48.4
PRCOL_00001992 Prasinoderma coloniale HOM05D003781 ORTHO05D004299 1.1e-29 134.8 285 32.3
ATR0772G001 Amborella trichopoda HOM05D003781 ORTHO05D004299 1.3e-25 121.3 161 45.3
SGA_v2.0_scaffold31G12848 Striga asiatica HOM05D003781 ORTHO05D004299 1.6e-23 114.4 112 53.6
AL1G32760 Arabidopsis lyrata HOM05D003781 ORTHO05D004299 2.6e-21 107.1 105 51.4
Actinidia06046 Actinidia chinensis HOM05D003781 ORTHO05D004299 3.3e-21 106.7 63 76.2
QL07p036300 Quercus lobata HOM05D001729 ORTHO05D001155 2.2e-20 104.0 204 37.7
EL10Ac6g14086 Beta vulgaris HOM05D003781 ORTHO05D004299 2.8e-20 103.6 77 61.0
Lsat_1_v5_gn_1_27721 Lactuca sativa HOM05D003781 ORTHO05D004299 2.8e-20 103.6 115 46.1
MCO12G060 Micromonas commoda HOM05D003781 ORTHO05D004299 2.2e-17 94.0 295 27.8
Gohir.D04G105401 Gossypium hirsutum HOM05D003781 ORTHO05D004299 1.1e-16 91.7 104 43.3
Gorai.005G179000 Gossypium raimondii HOM05D003781 ORTHO05D004299 1.5e-16 91.3 135 36.3
TAR629G3109 Trochodendron aralioides HOM05D003781 ORTHO05D004299 1.5e-16 91.3 101 50.5
CBR_g53498 Chara braunii HOM05D003781 ORTHO05D004299 3.2e-16 90.1 107 45.8
SGA_v2.0_scaffold522G52710 Striga asiatica HOM05D003781 ORTHO05D004299 3.3e-13 80.1 155 34.2
CBR_g53714 Chara braunii HOM05D003781 ORTHO05D004299 7.5e-13 79.0 151 31.1
Cre12.g542400 Chlamydomonas reinhardtii HOM05D003781 ORTHO05D004299 9.7e-13 78.6 114 40.4
TPR.G742 Trifolium pratense HOM05D003781 ORTHO05D004299 1.3e-12 78.2 81 51.9
MD10G1054000 Malus domestica HOM05D003781 ORTHO05D004299 2.0e-10 70.9 77 45.5
Cfa017313 Carpinus fangiana HOM05D003781 ORTHO05D004299 1.3e-09 68.2 41 73.2
TPR.G38290 Trifolium pratense HOM05D010769 ORTHO05D011972 8.5e-09 65.5 53 56.6
Cfa022807 Carpinus fangiana HOM05D003781 ORTHO05D004299 3.2e-08 63.5 281 24.2
TPR.G165 Trifolium pratense HOM05D003781 ORTHO05D004299 3.2e-08 63.5 54 53.7
TPR.G7497 Trifolium pratense HOM05D003781 ORTHO05D004299 1.2e-07 61.6 53 54.7
TAR626G1654 Trochodendron aralioides HOM05D004538 ORTHO05D006068 3.6e-07 60.1 47 63.8
TAR375G0299 Trochodendron aralioides HOM05D067126 ORTHO05D415426 1.0e-06 58.5 43 65.1
Nitab4.5_0001552g0060 Nicotiana tabacum HOM05D003781 ORTHO05D004299 1.8e-06 57.8 56 51.8


User provided reference genes

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