Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000294 Sechium edule HOM05D003497 ORTHO05D003964 5.0e-185 651.0 329 100.0
Sed0023460 Sechium edule HOM05D003497 ORTHO05D003964 2.6e-69 266.5 431 41.5
Sed0003270 Sechium edule HOM05D003497 ORTHO05D003964 1.4e-67 260.8 357 46.2
MELO3C018024.2 Cucumis melo HOM05D003497 ORTHO05D003964 5.1e-65 252.3 429 41.0
ClCG10G010030 Citrullus lanatus HOM05D003497 ORTHO05D003964 1.5e-64 250.8 410 41.5
CsaV3_4G000070 Cucumis sativus L. HOM05D003497 ORTHO05D003964 1.7e-63 247.3 426 41.1
Sed0009840 Sechium edule HOM05D003497 ORTHO05D003964 5.0e-60 235.7 199 64.3
Sed0016990 Sechium edule HOM05D003497 ORTHO05D003964 1.5e-56 224.2 330 42.7
TAR625G0452 Trochodendron aralioides HOM05D003497 ORTHO05D003964 3.5e-45 186.4 402 35.8
TAR381G0023 Trochodendron aralioides HOM05D003497 ORTHO05D003964 7.7e-45 185.3 367 37.1
Nn3g19312 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.3e-44 184.5 382 35.9
CSS0043603 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 5.0e-44 182.6 423 34.5
Lalb_Chr06g0164971 Lupinus albus HOM05D003497 ORTHO05D003964 1.5e-43 181.0 351 37.0
Prupe.8G150500 Prunus persica HOM05D003497 ORTHO05D003964 3.2e-43 179.9 412 34.5
Medtr1g106020 Medicago truncatula HOM05D003497 ORTHO05D003964 5.5e-43 179.1 373 35.1
Nn6g34530 Nelumbo nucifera HOM05D003497 ORTHO05D003964 1.2e-42 177.9 382 35.3
Gohir.A13G047900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 8.0e-42 175.3 373 35.7
Gohir.D13G046300 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.3e-41 173.7 388 34.5
arahy.Tifrunner.gnm1.ann1.6MCD86 Arachis hypogaea HOM05D003497 ORTHO05D003964 6.8e-41 172.2 384 33.1
TPR.G21155 Trifolium pratense HOM05D003497 ORTHO05D003964 6.8e-41 172.2 376 35.4
Gorai.013G052000 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.0e-40 170.6 370 34.9
Haze_10291 Corylus avellana HOM05D003497 ORTHO05D003964 2.6e-40 170.2 438 32.4
CiPaw.06G163900 Carya illinoinensis HOM05D003497 ORTHO05D003964 3.4e-40 169.9 446 34.1
Atru.chr5.2286 Acer truncatum HOM05D003497 ORTHO05D003964 5.7e-40 169.1 420 33.3
RcHm_v2.0_Chr6g0248431 Rosa chinensis HOM05D003497 ORTHO05D003964 5.7e-40 169.1 421 32.8
Psat6g213160 Pisum sativum HOM05D003497 ORTHO05D003964 7.5e-40 168.7 347 36.9
Rhsim05G0093000 Rhododendron simsii HOM05D003497 ORTHO05D003964 4.8e-39 166.0 473 30.9
FAN20G1538 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.3e-39 165.2 422 32.5
FAN20G2306 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.3e-39 165.2 422 32.5
FAN27G0942 Fragaria x ananassa HOM05D003497 ORTHO05D003964 1.1e-38 164.9 393 34.9
vmacro22257 Vaccinium macrocarpon HOM05D003497 ORTHO05D003964 1.4e-38 164.5 441 31.7
COL.COLO4_32482 Corchorus olitorius HOM05D003497 ORTHO05D003964 2.4e-38 163.7 407 34.2
Ca_11026_v3 Cicer arietinum L. HOM05D003497 ORTHO05D003964 3.1e-38 163.3 383 34.7
Thecc.02G120200 Theobroma cacao HOM05D003497 ORTHO05D003964 5.4e-38 162.5 392 34.2
SGA_v2.0_scaffold225G43063 Striga asiatica HOM05D003497 ORTHO05D003964 1.6e-37 161.0 410 32.9
FvH4_2g03310 Fragaria vesca HOM05D003497 ORTHO05D003964 2.0e-37 160.6 425 31.5
Eucgr.H03378 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.7e-37 160.2 373 33.5
Phvul.007G047200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 2.7e-37 160.2 395 31.9
Cfa004695 Carpinus fangiana HOM05D003497 ORTHO05D003964 7.7e-37 158.7 446 31.2
VMungo0720G1031 Vigna mungo HOM05D003497 ORTHO05D003964 1.0e-36 158.3 398 32.7
Cc02_g20070 Coffea canephora HOM05D003497 ORTHO05D003964 1.3e-36 157.9 457 31.1
Glyma.20G135900 Glycine max HOM05D003497 ORTHO05D003964 2.3e-36 157.1 399 32.1
GSVIVG01037051001 Vitis vinifera HOM05D003497 ORTHO05D003964 5.0e-36 156.0 399 31.8
CARHR164040 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.5e-35 154.5 367 34.6
Oeu025307.1 Olea europaea HOM05D003497 ORTHO05D003964 1.9e-35 154.1 429 31.0
Duzib132G0146 Durio zibethinus HOM05D003497 ORTHO05D003964 2.5e-35 153.7 395 32.4
Lj5g0015963 Lotus japonicus HOM05D003497 ORTHO05D003964 3.3e-35 153.3 374 33.2
DCAR_021943 Daucus carota HOM05D003497 ORTHO05D003964 4.2e-35 152.9 431 30.9
Manes.07G056700 Manihot esculenta HOM05D003497 ORTHO05D003964 4.2e-35 152.9 464 28.9
Eucgr.I02495 Eucalyptus grandis HOM05D003497 ORTHO05D003964 2.1e-34 150.6 411 30.7
Lsat_1_v5_gn_5_117220 Lactuca sativa HOM05D003497 ORTHO05D003964 2.1e-34 150.6 379 32.5
HanXRQChr16g0502181 Helianthus annuus HOM05D003497 ORTHO05D003964 2.8e-34 150.2 408 30.4
Glyma.10G255600 Glycine max HOM05D003497 ORTHO05D003964 3.6e-34 149.8 379 31.9
Potri.005G109700 Populus trichocarpa HOM05D003497 ORTHO05D003964 4.7e-34 149.4 471 29.3
HPP92_007713 Vanilla planifolia HOM05D003497 ORTHO05D003964 6.1e-34 149.1 382 31.4
MSTRG.16671 Avicennia marina HOM05D003497 ORTHO05D003964 8.0e-34 148.7 427 30.9
CANSAT25G1915 Cannabis sativa HOM05D003497 ORTHO05D003964 8.0e-34 148.7 411 32.1
Eucgr.G00280 Eucalyptus grandis HOM05D003497 ORTHO05D003964 8.0e-34 148.7 357 33.1
TWI14G1256 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.0e-33 148.3 445 28.8
BcaC06g35052 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-32 144.8 388 29.9
BolC7t42548H Brassica oleracea HOM05D003497 ORTHO05D003964 1.2e-32 144.8 388 29.9
SalBow6G6060 Salvia bowleyana HOM05D003497 ORTHO05D003964 1.2e-32 144.8 384 31.5
Migut.B00464 Erythranthe guttata HOM05D003497 ORTHO05D003964 1.5e-32 144.4 406 32.3
Phvul.005G029000 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.5e-32 144.4 341 32.3
Gohir.A03G180900 Gossypium hirsutum HOM05D003497 ORTHO05D003964 2.6e-32 143.7 368 32.6
Gorai.005G229700 Gossypium raimondii HOM05D003497 ORTHO05D003964 2.6e-32 143.7 368 32.1
C07p20260 Brassica napus HOM05D003497 ORTHO05D003964 3.4e-32 143.3 392 29.3
Ah.01g007110 Amaranthus hybridus HOM05D003497 ORTHO05D003964 4.4e-32 142.9 460 28.3
BraA07t29128Z Brassica rapa HOM05D003497 ORTHO05D003964 4.4e-32 142.9 390 29.7
CARHR024190 Cardamine hirsuta HOM05D003497 ORTHO05D003964 1.3e-31 141.4 405 30.6
Gohir.D02G203142 Gossypium hirsutum HOM05D003497 ORTHO05D004787 1.7e-31 141.0 368 31.5
CARHR164020 Cardamine hirsuta HOM05D003497 ORTHO05D003964 2.2e-31 140.6 372 32.3
A07p13790 Brassica napus HOM05D003497 ORTHO05D003964 2.8e-31 140.2 390 29.7
AUR62027025 Chenopodium quinoa HOM05D003497 ORTHO05D003964 4.9e-31 139.4 469 27.7
BcaB03g14136 Brassica carinata HOM05D003497 ORTHO05D003964 6.3e-31 139.0 369 30.1
Sabra05G0090000 Salix brachista HOM05D003497 ORTHO05D003964 6.3e-31 139.0 471 27.6
unitig_744.g24206 Utricularia gibba HOM05D003497 ORTHO05D003964 6.3e-31 139.0 436 29.4
ATR0739G052 Amborella trichopoda HOM05D003497 ORTHO05D003964 8.3e-31 138.7 440 30.9
Sc18g0007350 Simmondsia chinensis HOM05D003497 ORTHO05D003964 1.1e-30 138.3 420 30.0
MD05G1106300 Malus domestica HOM05D003497 ORTHO05D003964 1.8e-30 137.5 350 35.1
PSO017G1612 Papaver somniferum HOM05D003497 ORTHO05D003964 1.8e-30 137.5 440 28.2
Phvul.005G029200 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 1.8e-30 137.5 337 33.8
QL11p029247 Quercus lobata HOM05D003497 ORTHO05D003964 1.8e-30 137.5 455 29.0
Ciclev10028208m.g Citrus clementina HOM05D003497 ORTHO05D003964 3.1e-30 136.7 450 28.2
PGSC0003DMG400021329 Solanum tuberosum HOM05D003497 ORTHO05D003964 3.1e-30 136.7 401 31.9
AL1G37530 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.1e-30 136.3 399 30.6
CSS0013379 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 4.1e-30 136.3 250 38.8
Carub.0001s2329 Capsella rubella HOM05D003497 ORTHO05D003964 5.4e-30 136.0 416 29.3
CSS0047045 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 7.0e-30 135.6 250 40.4
AT1G23780 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 1.6e-29 134.4 400 29.0
PGR142G0099 Punica granatum HOM05D003497 ORTHO05D003964 3.5e-29 133.3 440 29.1
Sp7g01980 Schrenkiella parvula HOM05D003497 ORTHO05D003964 3.5e-29 133.3 371 30.7
Sopen01g002980 Solanum pennellii HOM05D003497 ORTHO05D003964 3.5e-29 133.3 418 30.9
Phvul.005G037100 Phaseolus vulgaris HOM05D003497 ORTHO05D003964 7.8e-29 132.1 346 30.6
Nitab4.5_0000003g0710 Nicotiana tabacum HOM05D003497 ORTHO05D003964 2.9e-28 130.2 384 30.2
Solyc01g006990.4 Solanum lycopersicum HOM05D003497 ORTHO05D003964 8.6e-28 128.6 419 30.3
THA.LOC104822142 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-27 128.3 440 26.4
AUR62030867 Chenopodium quinoa HOM05D003497 ORTHO05D003964 1.5e-27 127.9 449 26.9
Atru.chr5.2290 Acer truncatum HOM05D003497 ORTHO05D003964 1.9e-27 127.5 241 35.7
Nitab4.5_0003918g0020 Nicotiana tabacum HOM05D003497 ORTHO05D003964 1.9e-27 127.5 403 28.8
PSO170G5054 Papaver somniferum HOM05D003497 ORTHO05D003964 1.9e-27 127.5 468 27.4
BolC4t26586H Brassica oleracea HOM05D003497 ORTHO05D003964 2.5e-27 127.1 337 33.5
CSS0013739 Camellia sinensis var. sinensis HOM05D003497 ORTHO05D003964 2.5e-27 127.1 247 37.7
C04p49930 Brassica napus HOM05D003497 ORTHO05D003964 4.3e-27 126.3 337 33.5
ECA234G0007 Erigeron canadensis HOM05D003497 ORTHO05D003964 4.3e-27 126.3 436 28.2
Actinidia28001 Actinidia chinensis HOM05D000349 ORTHO05D003964 7.3e-27 125.6 229 37.1
A04p15640 Brassica napus HOM05D003497 ORTHO05D003964 9.5e-27 125.2 337 32.3
Eucgr.I02498 Eucalyptus grandis HOM05D003497 ORTHO05D003964 1.6e-26 124.4 439 28.7
Thhalv10009461m.g Eutrema salsugineum HOM05D003497 ORTHO05D003964 2.1e-26 124.0 407 28.3
Aa31LG7G7660 Aethionema arabicum HOM05D003497 ORTHO05D003964 2.8e-26 123.6 441 26.5
Sp1g21160 Schrenkiella parvula HOM05D003497 ORTHO05D003964 2.8e-26 123.6 431 26.9
MBI16_g32073_MAGBIO Magnolia biondii HOM05D003497 ORTHO05D003964 3.6e-26 123.2 216 38.9
Peaxi162Scf00152g00641 Petunia axillaris HOM05D003497 ORTHO05D003964 4.7e-26 122.9 421 29.0
Haze_10298 Corylus avellana HOM05D003497 ORTHO05D003964 6.1e-26 122.5 252 34.9
Carub.0002s1705 Capsella rubella HOM05D003497 ORTHO05D003964 8.0e-26 122.1 345 30.1
BraA04t17199Z Brassica rapa HOM05D003497 ORTHO05D003964 1.0e-25 121.7 341 32.3
EL10Ac9g22176 Beta vulgaris HOM05D003497 ORTHO05D003964 1.4e-25 121.3 242 32.6
TWI14G0922 Tripterygium wilfordii HOM05D003497 ORTHO05D003964 1.8e-25 120.9 244 36.1
CDE04G1396 Ceratophyllum demersum HOM05D003497 ORTHO05D003964 2.3e-25 120.6 261 33.0
BcaC02g08840 Brassica carinata HOM05D003497 ORTHO05D003964 5.8e-24 115.9 338 32.0
Medtr4g019560 Medicago truncatula HOM05D003497 ORTHO05D003964 1.7e-23 114.4 218 37.2
RcHm_v2.0_Chr4g0407371 Rosa chinensis HOM05D003497 ORTHO05D003964 1.7e-23 114.4 270 33.3
Medtr7g057330 Medicago truncatula HOM05D003497 ORTHO05D003964 2.2e-23 114.0 219 36.5
Cpa.g.c35687 Carica papaya HOM05D003497 ORTHO05D003964 4.9e-23 112.8 366 27.9
Aqoxy5G00815 Aquilegia oxysepala HOM05D003497 ORTHO05D003964 1.4e-22 111.3 222 34.7
SEGI_36088 Sequoiadendron giganteum HOM05D003497 ORTHO05D003964 1.2e-21 108.2 433 24.9
Carub.0001s2328 Capsella rubella HOM05D003497 ORTHO05D003964 2.0e-21 107.5 251 33.9
MD10G1110600 Malus domestica HOM05D003497 ORTHO05D003964 2.3e-20 104.0 225 34.2
CAN.G911.43 Capsicum annuum HOM05D003497 ORTHO05D003964 3.0e-20 103.6 251 33.1
BcaB06g27743 Brassica carinata HOM05D003497 ORTHO05D003964 8.6e-20 102.1 322 31.1
Os03g0232000 Oryza sativa ssp. japonica HOM05D003497 ORTHO05D003964 8.6e-20 102.1 391 26.3
AT1G23770 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 2.5e-19 100.5 251 31.5
COL.COLO4_32483 Corchorus olitorius HOM05D003497 ORTHO05D003964 5.6e-19 99.4 214 34.1
Zm00001eb009480 Zea mays HOM05D003497 ORTHO05D003964 1.2e-18 98.2 385 26.5
MD10G1110700 Malus domestica HOM05D003497 ORTHO05D003964 1.6e-18 97.8 311 29.9
AL1G37520 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 2.1e-18 97.4 244 30.7
MD10G1110300 Malus domestica HOM05D003497 ORTHO05D003964 3.6e-18 96.7 248 31.5
RcHm_v2.0_Chr4g0407381 Rosa chinensis HOM05D003497 ORTHO05D003964 6.2e-18 95.9 221 34.4
BcaB03g11953 Brassica carinata HOM05D003497 ORTHO05D003964 8.0e-18 95.5 211 31.8
Migut.B00470 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.0e-18 95.5 229 32.3
THA.LOC104824678 Tarenaya hassleriana HOM05D003497 ORTHO05D003964 1.1e-17 95.1 244 29.9
Migut.B00469 Erythranthe guttata HOM05D003497 ORTHO05D003964 8.9e-17 92.0 244 32.4
Mapoly0001s0353 Marchantia polymorpha HOM05D003497 ORTHO05D003964 2.6e-16 90.5 272 29.8
AL2G29670 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 3.4e-16 90.1 179 36.3
Pp3c15_1340 Physcomitrium patens HOM05D003497 ORTHO05D003964 1.3e-15 88.2 284 28.9
PSO170G0850 Papaver somniferum HOM05D003497 ORTHO05D003964 1.7e-15 87.8 250 28.4
Ciclev10028907m.g Citrus clementina HOM05D003497 ORTHO05D003964 2.9e-15 87.0 214 30.8
HanXRQChr10g0290301 Helianthus annuus HOM05D003497 ORTHO05D003964 2.9e-15 87.0 243 28.0
AagrBONN_evm.TU.Sc2ySwM_344.3993 Anthoceros agrestis HOM05D003497 ORTHO05D003964 3.7e-15 86.7 240 29.6
Dinv09537 Davidia involucrata HOM05D006380 ORTHO05D008400 6.4e-15 85.9 358 27.1
PSO017G7033 Papaver somniferum HOM05D003497 ORTHO05D003964 1.9e-14 84.3 250 27.6
HanXRQChr10g0290281 Helianthus annuus HOM05D003497 ORTHO05D003964 2.4e-14 84.0 243 28.0
CiPaw.08G128300 Carya illinoinensis HOM05D000212 ORTHO05D003964 7.8e-13 79.0 150 39.3
PGR102G1148 Punica granatum HOM05D003497 ORTHO05D003964 7.8e-13 79.0 233 29.6
RcHm_v2.0_Chr4g0395411 Rosa chinensis HOM05D003497 ORTHO05D003964 1.7e-12 77.8 102 41.2
AT1G70360 Arabidopsis thaliana HOM05D003497 ORTHO05D003964 6.6e-12 75.9 170 34.1
Actinidia04396 Actinidia chinensis HOM05D003497 ORTHO05D003964 1.5e-11 74.7 191 29.8
AL5G35170 Arabidopsis lyrata HOM05D003497 ORTHO05D003964 4.3e-11 73.2 123 37.4
MD10G1110400 Malus domestica HOM05D003497 ORTHO05D003964 4.3e-11 73.2 95 41.1
MD10G1175800 Malus domestica HOM05D003497 ORTHO05D003964 1.2e-10 71.6 249 30.9
Potri.015G020600 Populus trichocarpa HOM05D003497 ORTHO05D003964 1.2e-10 71.6 103 37.9
PGR102G1733 Punica granatum HOM05D003497 ORTHO05D003964 1.6e-10 71.2 231 27.7
Haze_10296 Corylus avellana HOM05D003497 ORTHO05D003964 2.8e-10 70.5 80 41.2
HanXRQChr10g0290271 Helianthus annuus HOM05D003497 ORTHO05D003964 8.1e-10 68.9 147 32.7
PSO170G1569 Papaver somniferum HOM05D003497 ORTHO05D003964 4.0e-09 66.6 128 35.9
RcHm_v2.0_Chr4g0407391 Rosa chinensis HOM05D003497 ORTHO05D003964 4.0e-09 66.6 269 26.0
FvH4_5g20811 Fragaria vesca HOM05D003497 ORTHO05D003964 5.2e-09 66.2 87 40.2
FAN04G2985 Fragaria x ananassa HOM05D003497 ORTHO05D003964 5.2e-09 66.2 87 40.2
FAN18G2835 Fragaria x ananassa HOM05D003497 ORTHO05D003964 8.9e-09 65.5 87 40.2
BcaC02g08839 Brassica carinata HOM05D003497 ORTHO05D003964 1.2e-08 65.1 222 30.6
Haze_10290 Corylus avellana HOM05D003497 ORTHO05D003964 2.0e-08 64.3 228 27.2
PSO017G5705 Papaver somniferum HOM05D003497 ORTHO05D003964 7.5e-08 62.4 137 34.3
Lsat_1_v5_gn_5_117240 Lactuca sativa HOM05D003497 ORTHO05D003964 9.9e-08 62.0 50 54.0
Cfa004698 Carpinus fangiana HOM05D003497 ORTHO05D003964 1.7e-07 61.2 69 40.6
Migut.B00467 Erythranthe guttata HOM05D003497 ORTHO05D003964 2.2e-07 60.8 101 35.6
BcaC07g39213 Brassica carinata HOM05D003497 ORTHO05D024176 1.1e-06 58.5 303 24.1
SMO270G0122 Selaginella moellendorffii HOM05D003497 ORTHO05D003964 1.1e-06 58.5 169 30.2


User provided reference genes

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