Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000287 Sechium edule HOM05D003722 ORTHO05D004589 0.0e+00 1440.6 955 100.0
ClCG05G015740 Citrullus lanatus HOM05D003722 ORTHO05D004589 2.7e-292 1008.8 949 78.6
CsaV3_4G036040 Cucumis sativus L. HOM05D003722 ORTHO05D004589 1.4e-285 986.5 909 79.0
MELO3C016912.2 Cucumis melo HOM05D003722 ORTHO05D004589 1.3e-273 946.8 998 65.4
Sed0027838 Sechium edule HOM05D003722 ORTHO05D004589 3.7e-249 865.5 777 85.2
Prupe.1G404200 Prunus persica HOM05D003722 ORTHO05D004589 8.9e-227 791.2 938 64.6
Manes.16G085600 Manihot esculenta HOM05D003722 ORTHO05D004589 2.1e-223 780.0 955 67.7
RcHm_v2.0_Chr6g0311801 Rosa chinensis HOM05D003722 ORTHO05D004589 6.6e-222 775.0 939 63.6
MD15G1049900 Malus domestica HOM05D003722 ORTHO05D004589 2.8e-220 769.6 930 64.6
Potri.006G220900 Populus trichocarpa HOM05D003722 ORTHO05D004589 4.4e-218 762.3 951 67.4
Haze_18293 Corylus avellana HOM05D003722 ORTHO05D004589 1.3e-217 760.8 948 65.8
Potri.018G048700 Populus trichocarpa HOM05D003722 ORTHO05D004589 2.9e-217 759.6 949 66.1
Manes.03G053433 Manihot esculenta HOM05D003722 ORTHO05D004589 3.8e-217 759.2 956 68.0
GSVIVG01035469001 Vitis vinifera HOM05D003722 ORTHO05D004589 1.4e-216 757.3 838 70.3
MD08G1071300 Malus domestica HOM05D003722 ORTHO05D004589 1.3e-214 750.7 929 66.0
FAN27G2597 Fragaria x ananassa HOM05D003722 ORTHO05D004589 1.7e-214 750.4 932 56.9
FAN20G0071 Fragaria x ananassa HOM05D003722 ORTHO05D004589 4.0e-211 739.2 918 66.3
FvH4_2g30970 Fragaria vesca HOM05D003722 ORTHO05D004589 2.0e-210 736.9 924 65.7
FAN24G1820 Fragaria x ananassa HOM05D003722 ORTHO05D004589 3.4e-210 736.1 924 65.7
TWI32G0253 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 4.6e-207 725.7 932 66.7
QL02p017002 Quercus lobata HOM05D003722 ORTHO05D004589 1.8e-206 723.8 966 65.4
Sabra18G0046400 Salix brachista HOM05D003722 ORTHO05D004589 1.6e-204 717.2 831 69.9
Dinv02138 Davidia involucrata HOM05D003722 ORTHO05D004589 2.1e-204 716.8 867 64.7
Sabra06G0170700 Salix brachista HOM05D003722 ORTHO05D004589 4.8e-204 715.7 1015 59.8
CiPaw.15G091900 Carya illinoinensis HOM05D003722 ORTHO05D004589 2.6e-202 709.9 926 61.6
TAR624G1180 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.6e-199 700.7 832 68.1
VMungo0647G1341 Vigna mungo HOM05D003722 ORTHO05D004589 1.8e-198 697.2 901 66.0
Hma1.2p1_0836F.1_g225970 Hydrangea macrophylla HOM05D003722 ORTHO05D004589 1.9e-197 693.7 926 66.4
Dinv41842 Davidia involucrata HOM05D003722 ORTHO05D004589 1.6e-196 690.6 951 64.2
Atru.chr7.1848 Acer truncatum HOM05D003722 ORTHO05D004589 8.1e-196 688.3 941 65.0
Glyma.14G098900 Glycine max HOM05D003722 ORTHO05D004589 4.0e-195 686.0 829 70.7
TWI34G0168 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 1.2e-194 684.5 925 65.2
arahy.Tifrunner.gnm1.ann1.JX1TK4 Arachis hypogaea HOM05D003722 ORTHO05D004589 4.9e-193 679.1 875 66.4
Nn6g35614 Nelumbo nucifera HOM05D003722 ORTHO05D004589 8.4e-193 678.3 808 71.8
TAR636G3697 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.4e-192 677.6 816 63.6
Eucgr.C03158 Eucalyptus grandis HOM05D003722 ORTHO05D004589 1.8e-190 670.6 810 70.5
HanXRQChr09g0261801 Helianthus annuus HOM05D003722 ORTHO05D004589 2.3e-190 670.2 908 60.8
Nitab4.5_0000446g0200 Nicotiana tabacum HOM05D003722 ORTHO05D004589 3.0e-190 669.8 927 60.8
Medtr1g015450 Medicago truncatula HOM05D003722 ORTHO05D004589 2.5e-189 666.8 917 63.1
PGR044G0665 Punica granatum HOM05D003722 ORTHO05D004589 3.3e-189 666.4 878 66.3
CANSAT25G1471 Cannabis sativa HOM05D003722 ORTHO05D004589 4.3e-189 666.0 807 66.5
TAR626G0360 Trochodendron aralioides HOM05D003722 ORTHO05D004589 5.7e-189 665.6 801 71.9
CSS0013734 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 1.3e-188 664.5 841 68.6
Phvul.001G038700 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 1.6e-188 664.1 901 64.8
Phvul.009G081900 Phaseolus vulgaris HOM05D003722 ORTHO05D004589 3.7e-188 662.9 752 72.5
TAR626G0824 Trochodendron aralioides HOM05D003722 ORTHO05D004589 1.8e-187 660.6 802 71.6
Oeu036060.1 Olea europaea HOM05D003722 ORTHO05D004589 2.4e-187 660.2 716 76.0
COL.COLO4_21138 Corchorus olitorius HOM05D003722 ORTHO05D004589 4.1e-187 659.4 939 61.2
Glyma.17G225800 Glycine max HOM05D003722 ORTHO05D004589 5.3e-187 659.1 734 75.7
Ciclev10007327m.g Citrus clementina HOM05D003722 ORTHO05D004589 6.9e-187 658.7 836 68.7
Lj5g0007526 Lotus japonicus HOM05D003722 ORTHO05D004589 1.2e-186 657.9 834 68.3
Lalb_Chr22g0356231 Lupinus albus HOM05D003722 ORTHO05D004589 5.9e-186 655.6 808 70.0
Gohir.D07G019500 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.0e-185 654.8 827 66.9
PSO135G0299 Papaver somniferum HOM05D003722 ORTHO05D004589 2.2e-185 653.7 807 65.9
Ca_13110_v3 Cicer arietinum L. HOM05D003722 ORTHO05D004589 5.0e-185 652.5 833 68.3
TPR.G38933 Trifolium pratense HOM05D003722 ORTHO05D004589 3.2e-184 649.8 833 65.8
Aqoxy7G04082 Aquilegia oxysepala HOM05D003722 ORTHO05D004589 7.2e-184 648.7 804 67.9
Glyma.06G055800 Glycine max HOM05D003722 ORTHO05D004589 1.6e-183 647.5 803 67.0
Gohir.A07G019700 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.6e-183 647.5 827 66.3
PSO724G0454 Papaver somniferum HOM05D003722 ORTHO05D004589 6.1e-183 645.6 807 67.0
Thecc.09G063300 Theobroma cacao HOM05D003722 ORTHO05D004589 3.0e-182 643.3 933 61.7
Lj7A221G29 Lonicera japonica HOM05D003722 ORTHO05D004589 2.5e-181 640.2 852 60.0
Gorai.001G020200 Gossypium raimondii HOM05D003722 ORTHO05D004589 4.3e-181 639.4 827 65.7
CAN.G881.1 Capsicum annuum HOM05D003722 ORTHO05D004589 5.7e-181 639.0 808 66.3
arahy.Tifrunner.gnm1.ann1.G8USHK Arachis hypogaea HOM05D003722 ORTHO05D004589 7.4e-181 638.6 794 68.5
Sp7g30950 Schrenkiella parvula HOM05D003722 ORTHO05D004589 7.4e-181 638.6 936 61.5
Sc23g0004200 Simmondsia chinensis HOM05D003722 ORTHO05D004589 6.3e-180 635.6 920 61.4
MBI19_g11832_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-179 634.4 811 68.2
VMungo1309G1038 Vigna mungo HOM05D003722 ORTHO05D004589 1.4e-179 634.4 799 67.6
Rhsim03G0063100 Rhododendron simsii HOM05D003722 ORTHO05D004589 3.1e-179 633.3 846 65.7
Duzib187G0791 Durio zibethinus HOM05D003722 ORTHO05D004589 6.9e-179 632.1 827 66.3
THA.LOC104803705 Tarenaya hassleriana HOM05D003722 ORTHO05D004589 1.2e-178 631.3 936 62.2
Gohir.D06G083100 Gossypium hirsutum HOM05D003722 ORTHO05D004589 1.5e-178 630.9 849 65.5
Lsat_1_v5_gn_8_70661 Lactuca sativa HOM05D003722 ORTHO05D004589 1.5e-178 630.9 914 62.6
Peaxi162Scf00486g01029 Petunia axillaris HOM05D003722 ORTHO05D004589 2.6e-178 630.2 955 59.6
DCAR_001223 Daucus carota HOM05D003722 ORTHO05D004589 4.5e-178 629.4 811 69.1
Lalb_Chr23g0267971 Lupinus albus HOM05D003722 ORTHO05D004589 6.5e-177 625.5 809 59.0
Nitab4.5_0002831g0060 Nicotiana tabacum HOM05D003722 ORTHO05D004589 6.5e-177 625.5 931 61.7
C03p86790 Brassica napus HOM05D003722 ORTHO05D004589 3.2e-176 623.2 725 67.2
DCAR_004379 Daucus carota HOM05D003722 ORTHO05D004589 1.2e-175 621.3 857 64.2
vmacro07490 Vaccinium macrocarpon HOM05D003722 ORTHO05D004589 1.6e-175 620.9 949 57.9
ATR0598G202 Amborella trichopoda HOM05D003722 ORTHO05D004589 2.1e-175 620.5 795 67.2
CSS0048906 Camellia sinensis var. sinensis HOM05D003722 ORTHO05D004589 2.7e-175 620.2 715 74.3
MSTRG.25985 Avicennia marina HOM05D003722 ORTHO05D004589 3.6e-175 619.8 808 68.1
Migut.E01781 Erythranthe guttata HOM05D003722 ORTHO05D004589 4.6e-175 619.4 718 71.3
CiPaw.16G068500 Carya illinoinensis HOM05D003722 ORTHO05D004589 1.8e-174 617.5 847 68.1
arahy.Tifrunner.gnm1.ann1.V9GZ7C Arachis hypogaea HOM05D003722 ORTHO05D004589 2.3e-174 617.1 785 69.6
Migut.A00079 Erythranthe guttata HOM05D003722 ORTHO05D004589 3.0e-174 616.7 828 65.8
arahy.Tifrunner.gnm1.ann1.V7LPDI Arachis hypogaea HOM05D003722 ORTHO05D004589 3.9e-174 616.3 785 67.4
AT4G33210 Arabidopsis thaliana HOM05D003722 ORTHO05D004589 5.1e-174 615.9 928 59.6
Solyc08g061820.3 Solanum lycopersicum HOM05D003722 ORTHO05D004589 5.1e-174 615.9 928 59.8
Carub.0007s0725 Capsella rubella HOM05D003722 ORTHO05D004589 1.1e-173 614.8 926 60.8
Sopen08g017250 Solanum pennellii HOM05D003722 ORTHO05D004589 2.6e-173 613.6 928 59.8
HanXRQChr05g0135941 Helianthus annuus HOM05D003722 ORTHO05D004589 5.7e-173 612.5 903 58.4
Nn8g38669 Nelumbo nucifera HOM05D003722 ORTHO05D004589 5.7e-173 612.5 897 64.0
SalBow4G2891 Salvia bowleyana HOM05D003722 ORTHO05D004589 7.4e-173 612.1 829 63.3
BcaC01g01002 Brassica carinata HOM05D003722 ORTHO05D004589 9.7e-173 611.7 725 66.8
BolC3t20973H Brassica oleracea HOM05D003722 ORTHO05D004589 9.7e-173 611.7 725 66.8
PGSC0003DMG400018806 Solanum tuberosum HOM05D003722 ORTHO05D004589 2.2e-172 610.5 833 64.1
ECA236G0039 Erigeron canadensis HOM05D003722 ORTHO05D004589 6.3e-172 609.0 857 64.8
BcaNung02160 Brassica carinata HOM05D003722 ORTHO05D004589 2.4e-171 607.1 934 60.1
BolC7t46400H Brassica oleracea HOM05D003722 ORTHO05D004589 2.4e-171 607.1 934 60.1
Actinidia27552 Actinidia chinensis HOM05D003722 ORTHO05D004589 3.1e-171 606.7 927 59.0
Duzib168G1968 Durio zibethinus HOM05D003722 ORTHO05D004589 3.1e-171 606.7 942 53.9
Glyma.04G055700 Glycine max HOM05D003722 ORTHO05D004589 3.1e-171 606.7 756 67.3
Gorai.010G096600 Gossypium raimondii HOM05D003722 ORTHO05D004589 5.3e-171 605.9 876 58.7
BolC1t00522H Brassica oleracea HOM05D003722 ORTHO05D004589 1.2e-170 604.7 825 65.6
BraA03t15228Z Brassica rapa HOM05D003722 ORTHO05D004589 1.2e-170 604.7 927 59.1
C01p05420 Brassica napus HOM05D003722 ORTHO05D004589 2.0e-170 604.0 825 65.7
Thhalv10024312m.g Eutrema salsugineum HOM05D003722 ORTHO05D004589 5.9e-170 602.4 927 60.7
BcaB03g12811 Brassica carinata HOM05D003722 ORTHO05D004589 1.3e-169 601.3 750 66.0
Aa31sc290G30 Aethionema arabicum HOM05D003722 ORTHO05D004589 2.9e-169 600.1 832 64.5
A01p04970 Brassica napus HOM05D003722 ORTHO05D004589 5.0e-169 599.4 816 65.6
BraA01t00479Z Brassica rapa HOM05D003722 ORTHO05D004589 2.5e-168 597.0 825 65.0
BcaC09g52132 Brassica carinata HOM05D003722 ORTHO05D004589 5.5e-168 595.9 944 59.4
AL7G18350 Arabidopsis lyrata HOM05D003722 ORTHO05D004589 7.2e-168 595.5 833 64.6
Lalb_Chr08g0244821 Lupinus albus HOM05D003722 ORTHO05D004589 5.2e-166 589.3 836 63.0
BraA08t33724Z Brassica rapa HOM05D003722 ORTHO05D004589 8.8e-166 588.6 726 64.2
HanXRQChr03g0065591 Helianthus annuus HOM05D003722 ORTHO05D004589 1.1e-165 588.2 912 61.3
SGA_v2.0_scaffold163G37999 Striga asiatica HOM05D003722 ORTHO05D004589 1.6e-162 577.8 717 69.5
BolC3t20974H Brassica oleracea HOM05D003722 ORTHO05D004589 4.5e-162 576.2 837 60.0
CARHR241240 Cardamine hirsuta HOM05D003722 ORTHO05D004589 1.7e-161 574.3 920 58.7
EL10Ac2g03782 Beta vulgaris HOM05D003722 ORTHO05D004589 3.2e-160 570.1 805 60.0
SGA_v2.0_scaffold64G21877 Striga asiatica HOM05D003722 ORTHO05D004589 6.7e-158 562.4 719 69.5
C03p86800 Brassica napus HOM05D003722 ORTHO05D004589 1.6e-154 551.2 837 58.4
A08p17740 Brassica napus HOM05D003722 ORTHO05D004589 5.9e-154 549.3 725 64.3
A08p17750 Brassica napus HOM05D003722 ORTHO05D004589 1.0e-153 548.5 800 59.0
SGA_v2.0_scaffold169G38713 Striga asiatica HOM05D003722 ORTHO05D004589 3.8e-153 546.6 730 65.2
BraA08t33725Z Brassica rapa HOM05D003722 ORTHO05D004589 2.3e-150 537.3 800 58.6
Medtr1g015480 Medicago truncatula HOM05D003722 ORTHO05D004589 8.8e-150 535.4 706 67.7
SEGI_30451 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 2.0e-149 534.3 815 60.9
Hund19422 Selenicereus undatus HOM05D003722 ORTHO05D004589 8.3e-148 528.9 995 48.3
AUR62009080 Chenopodium quinoa HOM05D003722 ORTHO05D004589 9.1e-147 525.4 829 56.9
AUR62020586 Chenopodium quinoa HOM05D003722 ORTHO05D004589 1.0e-145 521.9 805 61.4
CDE07G1686 Ceratophyllum demersum HOM05D003722 ORTHO05D004589 1.6e-143 514.6 776 63.5
TWI39G1239 Tripterygium wilfordii HOM05D003722 ORTHO05D004589 7.0e-139 499.2 658 65.8
Psat6g022880 Pisum sativum HOM05D003722 ORTHO05D004589 1.2e-138 498.4 831 54.6
SEGI_01273 Sequoiadendron giganteum HOM05D003722 ORTHO05D004589 9.5e-136 488.8 720 64.0
unitig_748.g8237 Utricularia gibba HOM05D003722 ORTHO05D004589 5.7e-133 479.6 717 64.6
HPP92_006154 Vanilla planifolia HOM05D003722 ORTHO05D004589 1.2e-130 471.9 839 54.0
unitig_4.g30332 Utricularia gibba HOM05D003722 ORTHO05D004589 2.3e-126 457.6 719 48.8
Cpa.g.sc126.25 Carica papaya HOM05D003722 ORTHO05D004589 4.4e-125 453.4 600 72.3
Pp3c5_23900 Physcomitrium patens HOM05D003722 ORTHO05D004589 1.1e-120 438.7 844 49.2
Mapoly0202s0013 Marchantia polymorpha HOM05D003722 ORTHO05D004589 9.9e-117 425.6 807 50.4
Gohir.A06G081600 Gossypium hirsutum HOM05D003722 ORTHO05D004589 4.1e-115 420.2 599 64.3
MBI13_g31962_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.3e-108 398.7 710 54.9
SMO238G0031 Selaginella moellendorffii HOM05D003722 ORTHO05D004589 5.1e-105 386.7 641 58.3
Pp3c4_12360 Physcomitrium patens HOM05D003722 ORTHO05D004589 4.3e-104 383.6 809 52.9
Pp3c12_17410 Physcomitrium patens HOM05D003722 ORTHO05D004589 2.8e-103 380.9 844 42.3
Zm00001eb048660 Zea mays HOM05D003722 ORTHO05D004589 2.7e-98 364.4 442 54.5
Actinidia25690 Actinidia chinensis HOM05D003722 ORTHO05D004589 1.1e-96 359.0 568 71.8
Sc09g0010110 Simmondsia chinensis HOM05D003722 ORTHO05D004589 7.3e-96 356.3 664 55.0
Pp3c6_6070 Physcomitrium patens HOM05D003722 ORTHO05D004589 5.8e-93 346.7 932 40.7
CBR_g11995 Chara braunii HOM05D003722 ORTHO05D004589 9.9e-93 345.9 687 53.7
MBI13_g13882_MAGBIO Magnolia biondii HOM05D003722 ORTHO05D004589 1.4e-91 342.0 429 58.0
Cc08_g01170 Coffea canephora HOM05D003722 ORTHO05D004589 2.1e-90 338.2 540 57.4
SalBow1G2799 Salvia bowleyana HOM05D003722 ORTHO05D004589 1.4e-86 325.5 564 69.5
Zm00001eb223490 Zea mays HOM05D003722 ORTHO05D004589 4.0e-86 323.9 398 54.5
Os10g0396400 Oryza sativa ssp. japonica HOM05D003722 ORTHO05D004589 2.5e-80 304.7 566 57.2
AagrBONN_evm.TU.Sc2ySwM_117.2463 Anthoceros agrestis HOM05D003722 ORTHO05D004589 8.4e-76 289.7 602 58.3
Oeu022303.1 Olea europaea HOM05D003722 ORTHO05D004589 6.0e-74 283.5 926 31.3
SHI18847 Sapria himalayana HOM05D000105 ORTHO05D000023 8.7e-73 279.6 1219 27.6
Oeu028128.1 Olea europaea HOM05D003722 ORTHO05D004589 2.6e-61 241.5 311 74.9
Cc08_g01160 Coffea canephora HOM05D003722 ORTHO05D004589 1.3e-55 222.6 191 62.8
Psat3g079480 Pisum sativum HOM05D003722 ORTHO05D004589 2.9e-52 211.5 139 76.3
Actinidia25691 Actinidia chinensis HOM05D003722 ORTHO05D004589 2.1e-50 205.3 328 41.8
Gohir.A06G081780 Gossypium hirsutum HOM05D003722 ORTHO05D004589 2.6e-45 188.3 224 49.6
Ah.11g044300 Amaranthus hybridus HOM05D003722 ORTHO05D004589 1.6e-37 162.5 142 61.3
Cpa.g.sc126.26 Carica papaya HOM05D003722 ORTHO05D004589 4.1e-30 137.9 126 60.3
VMungo0720G2633 Vigna mungo HOM05D003722 ORTHO05D004589 9.1e-30 136.7 88 78.4
Psat5g213240 Pisum sativum HOM05D003722 ORTHO05D004589 7.7e-29 133.7 75 85.3
VMungo0251G0605 Vigna mungo HOM05D003722 ORTHO05D001926 1.0e-28 133.3 120 61.7
ECA236G4568 Erigeron canadensis HOM05D000007 ORTHO05D000039 1.7e-15 89.4 66 71.2
SalBow1G8614 Salvia bowleyana HOM05D003722 ORTHO05D050768 2.2e-15 89.0 239 69.0
Mapoly0101s0054 Marchantia polymorpha HOM05D003722 ORTHO05D004589 6.6e-12 77.4 59 57.6
Cre12.g525600 Chlamydomonas reinhardtii HOM05D003722 ORTHO05D004589 1.4e-09 69.7 206 27.7
Psat5g114640 Pisum sativum HOM05D003722 ORTHO05D004589 5.4e-06 57.8 46 58.7


User provided reference genes

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