Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000270 Sechium edule HOM05D005158 ORTHO05D005510 7.7e-261 903.3 458 100.0
ClCG07G007220 Citrullus lanatus HOM05D005158 ORTHO05D005510 6.0e-205 717.6 461 80.0
CsaV3_5G015040 Cucumis sativus L. HOM05D005158 ORTHO05D005510 4.8e-202 708.0 458 79.5
MELO3C014995.2 Cucumis melo HOM05D005158 ORTHO05D005510 1.4e-198 696.4 459 79.1
TAR374G1701 Trochodendron aralioides HOM05D005158 ORTHO05D005510 8.3e-138 494.6 376 67.6
Prupe.1G327200 Prunus persica HOM05D005158 ORTHO05D005510 1.2e-136 490.7 459 59.5
Actinidia36249 Actinidia chinensis HOM05D005158 ORTHO05D005510 7.8e-136 488.0 474 57.0
Duzib251G0375 Durio zibethinus HOM05D005158 ORTHO05D005510 1.7e-135 486.9 454 58.4
COL.COLO4_13149 Corchorus olitorius HOM05D005158 ORTHO05D005510 2.5e-134 483.0 395 63.3
HanXRQChr08g0212241 Helianthus annuus HOM05D005158 ORTHO05D005510 2.5e-134 483.0 467 55.7
QL03p033448 Quercus lobata HOM05D005158 ORTHO05D005510 3.3e-134 482.6 461 59.0
CSS0029988 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 7.3e-134 481.5 376 66.5
Potri.010G111100 Populus trichocarpa HOM05D005158 ORTHO05D005510 9.5e-134 481.1 429 59.4
CANSAT64G2776 Cannabis sativa HOM05D005158 ORTHO05D005510 3.4e-131 472.6 457 58.0
Eucgr.G02179 Eucalyptus grandis HOM05D005158 ORTHO05D005510 3.4e-131 472.6 347 66.0
Manes.17G078700 Manihot esculenta HOM05D005158 ORTHO05D005510 3.4e-131 472.6 364 66.8
Ciclev10015117m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.3e-130 470.7 459 56.9
Nn4g24217 Nelumbo nucifera HOM05D005158 ORTHO05D005510 4.9e-130 468.8 358 64.8
RcHm_v2.0_Chr4g0441611 Rosa chinensis HOM05D005158 ORTHO05D005510 1.1e-129 467.6 465 55.9
Sabra10G0081500 Salix brachista HOM05D005158 ORTHO05D005510 1.4e-129 467.2 460 56.5
FvH4_4g32690 Fragaria vesca HOM05D005158 ORTHO05D005510 2.0e-128 463.4 356 65.4
MD16G1026300 Malus domestica HOM05D005158 ORTHO05D005510 5.9e-128 461.8 459 56.4
GSVIVG01011734001 Vitis vinifera HOM05D005158 ORTHO05D005510 5.9e-128 461.8 357 66.7
FAN12G3950 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-127 461.1 356 65.2
Carub.0002s1765 Capsella rubella HOM05D005158 ORTHO05D005510 6.6e-127 458.4 364 62.4
FAN17G2123 Fragaria x ananassa HOM05D005158 ORTHO05D005510 8.6e-127 458.0 407 59.2
Dinv27619 Davidia involucrata HOM05D005158 ORTHO05D005510 1.5e-126 457.2 380 61.1
SalBow8G1650 Salvia bowleyana HOM05D005158 ORTHO05D005510 5.6e-126 455.3 369 62.3
Cc11_g08400 Coffea canephora HOM05D005158 ORTHO05D005510 9.5e-126 454.5 398 57.5
SalBow8G5629 Salvia bowleyana HOM05D005158 ORTHO05D005510 2.8e-125 453.0 369 62.1
MSTRG.13599 Avicennia marina HOM05D005158 ORTHO05D005510 8.0e-125 451.4 425 58.6
Lsat_1_v5_gn_8_45001 Lactuca sativa HOM05D005158 ORTHO05D005510 8.0e-125 451.4 363 62.5
vmacro00408 Vaccinium macrocarpon HOM05D005158 ORTHO05D005510 8.0e-125 451.4 527 51.4
CAN.G236.18 Capsicum annuum HOM05D005158 ORTHO05D005510 1.1e-124 451.1 426 56.3
PSO478G5200 Papaver somniferum HOM05D005158 ORTHO05D005510 1.1e-124 451.1 441 56.2
PGR119G0382 Punica granatum HOM05D005158 ORTHO05D005510 1.4e-124 450.7 408 59.8
MD06G1226600 Malus domestica HOM05D005158 ORTHO05D005510 1.8e-124 450.3 464 54.5
Phvul.003G032200 Phaseolus vulgaris HOM05D005158 ORTHO05D005510 1.8e-124 450.3 458 54.4
PSO017G1154 Papaver somniferum HOM05D005158 ORTHO05D005510 3.1e-124 449.5 366 62.6
QL10p028515 Quercus lobata HOM05D005158 ORTHO05D005510 6.8e-124 448.4 353 64.3
Dinv28033 Davidia involucrata HOM05D005158 ORTHO05D005510 8.9e-124 448.0 311 70.7
GSVIVG01008427001 Vitis vinifera HOM05D005158 ORTHO05D005510 8.9e-124 448.0 359 64.1
Ciclev10008271m.g Citrus clementina HOM05D005158 ORTHO05D005510 1.2e-123 447.6 364 61.0
Cc11_g08410 Coffea canephora HOM05D005158 ORTHO05D005510 1.2e-123 447.6 460 53.0
Sopen05g014580 Solanum pennellii HOM05D005158 ORTHO05D005510 3.4e-123 446.0 368 63.3
Haze_10977 Corylus avellana HOM05D005158 ORTHO05D005510 5.8e-123 445.3 432 55.1
RcHm_v2.0_Chr7g0178481 Rosa chinensis HOM05D005158 ORTHO05D005510 5.8e-123 445.3 355 63.4
Sc14g0006290 Simmondsia chinensis HOM05D005158 ORTHO05D005510 7.5e-123 444.9 455 54.3
Haze_18844 Corylus avellana HOM05D005158 ORTHO05D005510 2.2e-122 443.4 403 58.8
Sc14g0007050 Simmondsia chinensis HOM05D005158 ORTHO05D005510 6.4e-122 441.8 345 65.2
FAN04G1228 Fragaria x ananassa HOM05D005158 ORTHO05D005510 2.4e-121 439.9 353 62.0
FvH4_5g17290 Fragaria vesca HOM05D005158 ORTHO05D005510 7.0e-121 438.3 353 62.6
Aqoxy3G00071 Aquilegia oxysepala HOM05D005158 ORTHO05D005510 1.2e-120 437.6 360 61.9
Migut.L00352 Erythranthe guttata HOM05D005158 ORTHO05D005510 2.0e-120 436.8 459 52.7
Lalb_Chr17g0338591 Lupinus albus HOM05D005158 ORTHO05D005510 2.7e-120 436.4 431 55.2
CiPaw.15G143000 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.3e-119 434.1 355 62.3
Sabra15G0037900 Salix brachista HOM05D005158 ORTHO05D005510 1.3e-119 434.1 339 63.1
Cfa008628 Carpinus fangiana HOM05D005158 ORTHO05D005510 1.7e-119 433.7 412 58.5
COL.COLO4_37683 Corchorus olitorius HOM05D000282 ORTHO05D005510 3.0e-119 433.0 356 61.0
Thecc.03G054800 Theobroma cacao HOM05D005158 ORTHO05D005510 2.5e-118 429.9 353 62.6
CSS0029687 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 3.3e-118 429.5 352 63.1
HanXRQChr08g0212251 Helianthus annuus HOM05D005158 ORTHO05D005510 3.3e-118 429.5 432 53.5
Lj2g0016958 Lotus japonicus HOM05D005158 ORTHO05D005510 5.6e-118 428.7 344 61.0
CDE05G1850 Ceratophyllum demersum HOM05D005158 ORTHO05D005510 2.3e-116 423.3 445 51.7
TWI75G0580 Tripterygium wilfordii HOM05D005158 ORTHO05D005510 2.3e-116 423.3 384 59.4
CSS0001942 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 6.8e-116 421.8 389 58.9
SGA_v2.0_scaffold234G43623 Striga asiatica HOM05D005158 ORTHO05D005510 8.9e-116 421.4 368 59.5
CiPaw.05G195800 Carya illinoinensis HOM05D005158 ORTHO05D005510 1.2e-115 421.0 424 54.5
MSTRG.4576 Avicennia marina HOM05D005158 ORTHO05D005510 5.8e-115 418.7 357 58.8
ECA233G1067 Erigeron canadensis HOM05D005158 ORTHO05D005510 1.7e-114 417.2 316 64.2
FAN18G0401 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.7e-114 417.2 313 64.9
FvH4_5g11940 Fragaria vesca HOM05D005158 ORTHO05D005510 4.9e-114 415.6 337 62.6
AUR62014187 Chenopodium quinoa HOM05D005158 ORTHO05D005510 2.4e-113 413.3 398 55.3
Migut.D01553 Erythranthe guttata HOM05D005158 ORTHO05D005510 4.1e-113 412.5 348 58.0
ATR0665G468 Amborella trichopoda HOM05D005158 ORTHO05D005510 5.4e-113 412.1 355 59.7
FAN18G4517 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.1e-113 411.8 345 61.4
FAN22G1395 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.2e-112 411.0 356 60.1
Ah.02g127790 Amaranthus hybridus HOM05D005158 ORTHO05D005510 2.1e-112 410.2 346 60.1
Atru.chr9.1740 Acer truncatum HOM05D005158 ORTHO05D005510 6.0e-112 408.7 312 65.7
Duzib205G1388 Durio zibethinus HOM05D005158 ORTHO05D005510 1.0e-111 407.9 444 51.4
FAN18G3280 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.0e-111 407.9 354 59.9
Oeu046166.1 Olea europaea HOM05D005158 ORTHO05D005510 1.3e-111 407.5 345 58.6
Lj6A744G51 Lonicera japonica HOM05D005158 ORTHO05D005510 2.1e-109 400.2 324 62.0
FAN13G1699 Fragaria x ananassa HOM05D005158 ORTHO05D005510 3.6e-109 399.4 371 56.1
Cc04_g06310 Coffea canephora HOM05D005158 ORTHO05D005510 1.8e-108 397.1 358 58.4
FAN08G3331 Fragaria x ananassa HOM05D005158 ORTHO05D005510 1.9e-105 387.1 329 60.2
Os03g0707200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 1.6e-101 374.0 294 60.5
AUR62039517 Chenopodium quinoa HOM05D005158 ORTHO05D005510 3.1e-100 369.8 389 50.1
SalBow1G1317 Salvia bowleyana HOM05D005158 ORTHO05D005510 9.0e-100 368.2 296 61.8
CSS0046275 Camellia sinensis var. sinensis HOM05D005158 ORTHO05D005510 5.4e-97 359.0 336 57.1
Hund20682 Selenicereus undatus HOM05D005158 ORTHO05D005510 7.8e-96 355.1 256 66.8
Rhsim09G0065800 Rhododendron simsii HOM05D005158 ORTHO05D005510 8.7e-95 351.7 270 66.7
Rhsim09G0065900 Rhododendron simsii HOM05D005158 ORTHO05D005510 1.9e-94 350.5 343 56.9
VMungo1215G0718 Vigna mungo HOM05D005158 ORTHO05D005510 2.5e-94 350.1 538 40.7
Peaxi162Scf00159g01112 Petunia axillaris HOM05D005158 ORTHO05D005510 5.8e-91 339.0 248 66.5
FAN13G2578 Fragaria x ananassa HOM05D005158 ORTHO05D005510 4.3e-86 322.8 371 48.8
Dinv14415 Davidia involucrata HOM05D005158 ORTHO05D005510 2.9e-82 310.1 388 49.5
HPP92_016306 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.3e-77 294.7 328 51.5
Prupe.5G232900 Prunus persica HOM05D005158 ORTHO05D005510 5.3e-76 289.3 238 60.5
Solyc05g017900.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.6e-75 287.0 231 64.5
AUR62014186 Chenopodium quinoa HOM05D005158 ORTHO05D005510 1.3e-66 258.1 266 49.6
Pp3c5_19920 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.4e-65 254.6 295 43.4
Thecc.02G284700 Theobroma cacao HOM05D005158 ORTHO05D005510 7.2e-65 252.3 210 60.0
HPP92_016287 Vanilla planifolia HOM05D005158 ORTHO05D005510 1.6e-64 251.1 251 53.0
Oeu003374.1 Olea europaea HOM05D005158 ORTHO05D005510 2.4e-60 237.3 276 50.4
Potri.008G130950 Populus trichocarpa HOM05D005158 ORTHO05D005510 4.1e-60 236.5 281 49.5
Zm00001eb054470 Zea mays HOM05D005158 ORTHO05D005510 6.9e-60 235.7 230 53.0
FAN07G0555 Fragaria x ananassa HOM05D005158 ORTHO05D005510 7.9e-56 222.2 257 51.8
SEGI_17459 Sequoiadendron giganteum HOM05D005158 ORTHO05D005510 6.7e-55 219.2 191 54.5
AagrBONN_evm.TU.Sc2ySwM_344.3657 Anthoceros agrestis HOM05D005158 ORTHO05D005510 3.1e-52 210.3 251 45.0
Oeu014055.2 Olea europaea HOM05D005158 ORTHO05D005510 3.4e-51 206.8 191 54.5
PRCOL_00003969 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 3.9e-47 193.4 302 37.7
Cpa.g.sc570.2 Carica papaya HOM05D005158 ORTHO05D005510 8.5e-42 175.6 137 63.5
Manes.06G007150 Manihot esculenta HOM05D005158 ORTHO05D005510 9.1e-36 155.6 198 47.0
Zm00001eb280420 Zea mays HOM05D005158 ORTHO05D005510 2.2e-34 151.0 144 53.5
HPP92_027195 Vanilla planifolia HOM05D005158 ORTHO05D005510 6.5e-34 149.4 186 44.6
HanXRQChr08g0212291 Helianthus annuus HOM05D005158 ORTHO05D005510 8.0e-32 142.5 112 58.0
Duzib068G0898 Durio zibethinus HOM05D005158 ORTHO05D005510 3.1e-28 130.6 251 37.1
TAR622G0559 Trochodendron aralioides HOM05D005158 ORTHO05D005510 5.9e-27 126.3 232 40.1
Prupe.5G232800 Prunus persica HOM05D005158 ORTHO05D005510 2.9e-26 124.0 85 68.2
Os06g0269200 Oryza sativa ssp. japonica HOM05D005158 ORTHO05D005510 5.5e-25 119.8 82 64.6
DCAR_007307 Daucus carota HOM05D005158 ORTHO05D005510 1.6e-24 118.2 102 58.8
Solyc05g017940.3 Solanum lycopersicum HOM05D005158 ORTHO05D005510 2.1e-24 117.9 104 61.5
Thecc.02G284900 Theobroma cacao HOM05D005158 ORTHO05D005510 4.7e-24 116.7 192 42.2
Gohir.D02G122150 Gossypium hirsutum HOM05D005158 ORTHO05D005510 3.4e-22 110.5 195 39.0
Peaxi162Scf00159g01110 Petunia axillaris HOM05D005158 ORTHO05D005510 7.5e-22 109.4 104 53.8
PGR044G0956 Punica granatum HOM05D005158 ORTHO05D005510 4.9e-21 106.7 193 37.3
PRCOL_00000423 Prasinoderma coloniale HOM05D005158 ORTHO05D005510 6.3e-21 106.3 223 33.6
Pp3c9_21990 Physcomitrium patens HOM05D005158 ORTHO05D005510 1.4e-20 105.1 311 28.6
MD16G1025900 Malus domestica HOM05D005158 ORTHO05D005510 4.1e-20 103.6 78 65.4
MCO07G148 Micromonas commoda HOM05D005158 ORTHO05D005510 5.4e-20 103.2 181 33.1
HanXRQChr08g0212271 Helianthus annuus HOM05D005158 ORTHO05D005510 2.0e-19 101.3 63 74.6
C06p44960 Brassica napus HOM05D005158 ORTHO05D005510 4.5e-19 100.1 107 52.3
Gorai.005G131900 Gossypium raimondii HOM05D005158 ORTHO05D005510 1.3e-18 98.6 141 44.0
SMO263G0001 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 4.0e-15 87.0 310 26.1
Mapoly0003s0267 Marchantia polymorpha HOM05D032652 ORTHO05D005510 5.2e-15 86.7 337 25.8
SMO118G0092 Selaginella moellendorffii HOM05D032652 ORTHO05D005510 8.9e-15 85.9 299 27.4
Manes.09G075257 Manihot esculenta HOM05D005158 ORTHO05D005510 1.5e-14 85.1 59 71.2
Cpa.g.sc130.33 Carica papaya HOM05D005158 ORTHO05D005510 3.4e-14 84.0 65 61.5
Pp3c15_24210 Physcomitrium patens HOM05D005158 ORTHO05D005510 9.2e-12 75.9 254 27.2
RcHm_v2.0_Chr7g0199801 Rosa chinensis HOM05D005158 ORTHO05D005510 1.6e-11 75.1 58 58.6
MCO07G404 Micromonas commoda HOM05D005158 ORTHO05D005510 6.0e-11 73.2 265 26.0
AagrBONN_evm.TU.Sc2ySwM_117.460 Anthoceros agrestis HOM05D005158 ORTHO05D005510 3.9e-10 70.5 245 25.7
MCO04G437 Micromonas commoda HOM05D005158 ORTHO05D005510 1.2e-08 65.5 321 25.5


User provided reference genes

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