Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000260 Sechium edule HOM05D007929 ORTHO05D008690 0.0e+00 1189.9 609 100.0
ClCG01G003880 Citrullus lanatus HOM05D007929 ORTHO05D008690 7.0e-209 731.1 620 68.2
MELO3C005557.2 Cucumis melo HOM05D007929 ORTHO05D008690 1.7e-202 709.9 626 66.5
CsaV3_5G004010 Cucumis sativus L. HOM05D007929 ORTHO05D008690 1.7e-202 709.9 625 66.4
QL12p013187 Quercus lobata HOM05D007929 ORTHO05D008690 9.5e-81 305.4 702 36.3
Thecc.03G256000 Theobroma cacao HOM05D007929 ORTHO05D008690 2.8e-80 303.9 706 34.8
Duzib205G1039 Durio zibethinus HOM05D007929 ORTHO05D008690 9.2e-76 288.9 724 35.8
Cfa021312 Carpinus fangiana HOM05D007929 ORTHO05D008690 4.3e-73 280.0 697 35.2
Prupe.5G074300 Prunus persica HOM05D007929 ORTHO05D008690 4.7e-72 276.6 689 35.1
Gohir.D08G189300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 3.1e-71 273.9 719 32.7
Dinv21608 Davidia involucrata HOM05D007929 ORTHO05D008690 2.0e-70 271.2 722 33.5
Duzib084G1023 Durio zibethinus HOM05D007929 ORTHO05D008690 2.6e-70 270.8 725 34.2
Gohir.A08G171000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.6e-70 270.8 721 32.9
Gorai.004G199400 Gossypium raimondii HOM05D007929 ORTHO05D008690 9.8e-70 268.9 719 33.1
CiPaw.12G107500 Carya illinoinensis HOM05D007929 ORTHO05D008690 1.7e-69 268.1 681 35.2
RcHm_v2.0_Chr7g0202661 Rosa chinensis HOM05D007929 ORTHO05D008690 1.1e-68 265.4 644 35.4
Dinv39112 Davidia involucrata HOM05D007929 ORTHO05D008690 4.6e-67 260.0 711 33.3
Gohir.A12G219000 Gossypium hirsutum HOM05D007929 ORTHO05D008690 1.3e-66 258.5 724 32.2
Gorai.008G237100 Gossypium raimondii HOM05D007929 ORTHO05D008690 4.3e-65 253.4 723 32.5
Manes.01G077200 Manihot esculenta HOM05D007929 ORTHO05D008690 1.4e-63 248.4 705 33.5
Potri.003G112000 Populus trichocarpa HOM05D007929 ORTHO05D008690 1.4e-60 238.4 721 31.8
Sabra01G0093400 Salix brachista HOM05D007929 ORTHO05D008690 1.4e-60 238.4 716 31.3
Duzib068G0525 Durio zibethinus HOM05D007929 ORTHO05D008690 7.1e-60 236.1 732 33.2
MD04G1085400 Malus domestica HOM05D007929 ORTHO05D008690 2.1e-59 234.6 652 33.0
COL.COLO4_37202 Corchorus olitorius HOM05D007929 ORTHO05D008690 3.5e-59 233.8 700 31.3
Potri.001G121200 Populus trichocarpa HOM05D007929 ORTHO05D008690 6.0e-59 233.0 723 31.3
FAN13G1817 Fragaria x ananassa HOM05D007929 ORTHO05D008690 1.3e-58 231.9 632 33.5
MD06G1062900 Malus domestica HOM05D007929 ORTHO05D008690 3.0e-58 230.7 667 31.8
Actinidia27458 Actinidia chinensis HOM05D007929 ORTHO05D008690 8.6e-58 229.2 711 31.9
Haze_07866 Corylus avellana HOM05D007929 ORTHO05D008690 2.5e-57 227.6 690 32.9
FAN08G2103 Fragaria x ananassa HOM05D007929 ORTHO05D008690 5.6e-57 226.5 632 33.5
Sabra03G0077700 Salix brachista HOM05D007929 ORTHO05D008690 7.3e-57 226.1 718 30.4
Ciclev10019204m.g Citrus clementina HOM05D007929 ORTHO05D008690 2.8e-56 224.2 711 30.0
Gohir.D12G221300 Gossypium hirsutum HOM05D007929 ORTHO05D008690 2.8e-56 224.2 721 31.6
FvH4_5g00200 Fragaria vesca HOM05D007929 ORTHO05D008690 6.2e-56 223.0 620 32.9
FAN18G3609 Fragaria x ananassa HOM05D007929 ORTHO05D008690 8.1e-56 222.6 620 32.7
Manes.02G036501 Manihot esculenta HOM05D007929 ORTHO05D008690 1.2e-54 218.8 696 31.6
Actinidia05192 Actinidia chinensis HOM05D007929 ORTHO05D008690 3.8e-53 213.8 697 31.7
Rhsim07G0105500 Rhododendron simsii HOM05D007929 ORTHO05D008690 3.8e-53 213.8 729 31.3
TWI60G0818 Tripterygium wilfordii HOM05D007929 ORTHO05D008690 1.3e-50 205.3 706 30.9
FAN04G0968 Fragaria x ananassa HOM05D007929 ORTHO05D008690 5.1e-50 203.4 674 30.9
vmacro14098 Vaccinium macrocarpon HOM05D007929 ORTHO05D008690 8.1e-48 196.1 696 30.3
TAR374G1634 Trochodendron aralioides HOM05D007929 ORTHO05D008690 6.4e-45 186.4 776 27.1
Nn6g34027 Nelumbo nucifera HOM05D007929 ORTHO05D008690 1.9e-44 184.9 765 27.6
Nn1g01073 Nelumbo nucifera HOM05D007929 ORTHO05D008690 3.2e-44 184.1 780 27.7
Hund14599 Selenicereus undatus HOM05D007929 ORTHO05D008690 1.9e-41 174.9 696 29.5
GSVIVG01004789001 Vitis vinifera HOM05D007929 ORTHO05D008690 2.6e-38 164.5 613 28.7
Eucgr.E00452 Eucalyptus grandis HOM05D007929 ORTHO05D008690 7.6e-38 162.9 709 26.8
AUR62007484 Chenopodium quinoa HOM05D007929 ORTHO05D008690 5.4e-36 156.8 705 29.5
Nitab4.5_0009716g0010 Nicotiana tabacum HOM05D007929 ORTHO05D008690 7.9e-35 152.9 720 26.2
Nitab4.5_0000993g0050 Nicotiana tabacum HOM05D007929 ORTHO05D008690 3.9e-34 150.6 714 26.5
Sc22g0000740 Simmondsia chinensis HOM05D007929 ORTHO05D008690 1.9e-33 148.3 619 25.7
Lj2A212T45 Lonicera japonica HOM05D007929 ORTHO05D008690 3.3e-33 147.5 555 29.4
PGSC0003DMG400004743 Solanum tuberosum HOM05D007929 ORTHO05D008690 4.3e-33 147.1 691 26.2
MBI04_g37591_MAGBIO Magnolia biondii HOM05D007929 ORTHO05D008690 1.1e-31 142.5 809 25.6
CAN.G1217.13 Capsicum annuum HOM05D007929 ORTHO05D008690 1.2e-30 139.0 725 26.2
Oeu029333.1 Olea europaea HOM05D007929 ORTHO05D008690 2.0e-30 138.3 648 28.7
AUR62039940 Chenopodium quinoa HOM05D007929 ORTHO05D008690 2.6e-30 137.9 662 29.0
Hma1.2p1_1720F.1_g299295 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 2.9e-29 134.4 223 42.6
Peaxi162Scf00002g00920 Petunia axillaris HOM05D007929 ORTHO05D008690 2.9e-29 134.4 726 26.4
Sopen08g027490 Solanum pennellii HOM05D007929 ORTHO05D008690 3.8e-29 134.0 693 25.3
Hma1.2p1_1720F.1_g299300 Hydrangea macrophylla HOM05D007929 ORTHO05D008690 4.2e-28 130.6 256 38.3
DCAR_027794 Daucus carota HOM05D007929 ORTHO05D008690 1.2e-27 129.0 400 31.0
MSTRG.25535 Avicennia marina HOM05D007929 ORTHO05D008690 2.7e-27 127.9 701 26.5
EL10Ac5g13019 Beta vulgaris HOM05D007929 ORTHO05D008690 1.3e-24 119.0 676 26.9
arahy.Tifrunner.gnm1.ann1.S80PKI Arachis hypogaea HOM05D007929 ORTHO05D008690 2.1e-24 118.2 164 43.9
Solyc08g079030.4 Solanum lycopersicum HOM05D007929 ORTHO05D008690 6.2e-24 116.7 267 36.7
Ah.12g056550 Amaranthus hybridus HOM05D007929 ORTHO05D008690 5.3e-23 113.6 662 26.0
AL1G23390 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 1.5e-22 112.1 319 33.5
BcaC07g41729 Brassica carinata HOM05D009328 ORTHO05D008690 2.0e-22 111.7 161 47.8
A06p09350 Brassica napus HOM05D009328 ORTHO05D008690 1.7e-21 108.6 161 47.8
BraA06t24123Z Brassica rapa HOM05D009328 ORTHO05D008690 1.7e-21 108.6 161 47.8
C08p47680 Brassica napus HOM05D009328 ORTHO05D008690 2.2e-21 108.2 164 48.2
A09p64080 Brassica napus HOM05D009328 ORTHO05D008690 3.8e-21 107.5 151 47.0
BolC8t52307H Brassica oleracea HOM05D009328 ORTHO05D008690 3.8e-21 107.5 161 47.2
BraA09t41754Z Brassica rapa HOM05D009328 ORTHO05D008690 3.8e-21 107.5 151 47.0
Thhalv10007497m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 4.9e-21 107.1 358 31.0
AT1G12120 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 6.5e-21 106.7 344 32.3
THA.LOC104823548 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 1.1e-20 105.9 242 37.2
C05p11050 Brassica napus HOM05D009328 ORTHO05D008690 4.2e-20 104.0 160 46.2
BolC5t29847H Brassica oleracea HOM05D009328 ORTHO05D008690 4.2e-20 104.0 160 46.2
Carub.0001s1181 Capsella rubella HOM05D009328 ORTHO05D008690 5.5e-20 103.6 299 33.1
A08p32980 Brassica napus HOM05D009328 ORTHO05D008690 1.6e-19 102.1 278 35.6
Sp1g10800 Schrenkiella parvula HOM05D009328 ORTHO05D008690 4.6e-19 100.5 296 34.1
BcaB03g13206 Brassica carinata HOM05D009328 ORTHO05D008690 6.0e-19 100.1 284 36.3
C08p15230 Brassica napus HOM05D009328 ORTHO05D008690 7.9e-19 99.8 264 35.6
BolC8t49153H Brassica oleracea HOM05D009328 ORTHO05D008690 7.9e-19 99.8 264 35.6
TAR375G1016 Trochodendron aralioides HOM05D007929 ORTHO05D008690 7.9e-19 99.8 384 27.3
BcaB02g06408 Brassica carinata HOM05D009328 ORTHO05D008690 1.3e-18 99.0 147 46.3
ECA233G5449 Erigeron canadensis HOM05D007929 ORTHO05D008690 3.0e-18 97.8 606 24.3
BcaB02g06406 Brassica carinata HOM05D009328 ORTHO05D008690 5.1e-18 97.1 161 44.1
THA.LOC104818527 Tarenaya hassleriana HOM05D009328 ORTHO05D008690 5.1e-18 97.1 218 39.4
BraA08t35218Z Brassica rapa HOM05D009328 ORTHO05D008690 8.7e-18 96.3 278 33.5
CARHR012480 Cardamine hirsuta HOM05D009328 ORTHO05D008690 1.5e-17 95.5 298 34.6
HPP92_015027 Vanilla planifolia HOM05D007929 ORTHO05D008690 2.5e-17 94.7 666 24.5
Lsat_1_v5_gn_6_1860 Lactuca sativa HOM05D007929 ORTHO05D008690 3.3e-17 94.4 163 43.6
Carub.0002s0245 Capsella rubella HOM05D009328 ORTHO05D008690 5.7e-17 93.6 179 40.8
AT1G62530 Arabidopsis thaliana HOM05D009328 ORTHO05D008690 9.7e-17 92.8 155 42.6
Aa31LG1G2600 Aethionema arabicum HOM05D009328 ORTHO05D008690 1.3e-16 92.4 114 51.8
AL2G13340 Arabidopsis lyrata HOM05D009328 ORTHO05D008690 8.2e-16 89.7 164 41.5
Migut.A00812 Erythranthe guttata HOM05D007929 ORTHO05D008690 3.1e-15 87.8 118 44.9
HanXRQChr13g0394961 Helianthus annuus HOM05D007929 ORTHO05D008690 2.0e-14 85.1 225 36.0
CANSAT21G2235 Cannabis sativa HOM05D007929 ORTHO05D008690 2.6e-14 84.7 426 26.3
Thhalv10024007m.g Eutrema salsugineum HOM05D009328 ORTHO05D008690 1.7e-13 82.0 268 32.8
Sp2g02060 Schrenkiella parvula HOM05D009328 ORTHO05D008690 3.8e-13 80.9 202 34.7
Cc08_g12850 Coffea canephora HOM05D007929 ORTHO05D008690 2.1e-11 75.1 602 23.8
GSVIVG01001285001 Vitis vinifera HOM05D007929 ORTHO05D008690 2.1e-11 75.1 281 28.8
HPP92_007417 Vanilla planifolia HOM05D007929 ORTHO05D008690 6.1e-11 73.6 705 23.4
Cfa019289 Carpinus fangiana HOM05D001536 ORTHO05D001442 2.5e-09 68.2 181 34.3
Os10g0553900 Oryza sativa ssp. japonica HOM05D036202 ORTHO05D008690 7.4e-09 66.6 152 33.6
CSS0014793 Camellia sinensis var. sinensis HOM05D007929 ORTHO05D008690 9.7e-09 66.2 79 46.8
Ah.02g126590 Amaranthus hybridus HOM05D001536 ORTHO05D001442 4.1e-07 60.8 119 35.3
Ciclev10030574m.g Citrus clementina HOM05D001536 ORTHO05D001442 4.1e-07 60.8 130 31.5
CiPaw.05G128200 Carya illinoinensis HOM05D001536 ORTHO05D001442 1.2e-06 59.3 113 32.7
Oeu057649.1 Olea europaea HOM05D001536 ORTHO05D001442 1.5e-06 58.9 276 26.8
CiPaw.06G089900 Carya illinoinensis HOM05D001536 ORTHO05D001442 2.0e-06 58.5 112 33.0
CDE12G0741 Ceratophyllum demersum HOM05D038938 ORTHO05D008690 2.0e-06 58.5 153 30.7
arahy.Tifrunner.gnm1.ann1.ULDL2L Arachis hypogaea HOM05D001536 ORTHO05D001442 2.6e-06 58.2 87 40.2
Haze_07670 Corylus avellana HOM05D001536 ORTHO05D001442 2.6e-06 58.2 171 31.6
TAR622G0794 Trochodendron aralioides HOM05D001536 ORTHO05D001442 2.6e-06 58.2 118 35.6
arahy.Tifrunner.gnm1.ann1.BZ8U3A Arachis hypogaea HOM05D001536 ORTHO05D001442 3.4e-06 57.8 87 40.2
MELO3C012134.2 Cucumis melo HOM05D001536 ORTHO05D001442 3.4e-06 57.8 129 32.6
Sed0017185 Sechium edule HOM05D001536 ORTHO05D001442 3.4e-06 57.8 235 27.7
CsaV3_5G033140 Cucumis sativus L. HOM05D001536 ORTHO05D001442 5.9e-06 57.0 129 31.0
Dinv16703 Davidia involucrata HOM05D001536 ORTHO05D001442 5.9e-06 57.0 137 34.3
CDE04G1089 Ceratophyllum demersum HOM05D001536 ORTHO05D001442 7.7e-06 56.6 109 36.7
MBI19_g16681_MAGBIO Magnolia biondii HOM05D001536 ORTHO05D001442 7.7e-06 56.6 162 32.1
RcHm_v2.0_Chr4g0438891 Rosa chinensis HOM05D001536 ORTHO05D001442 7.7e-06 56.6 120 34.2
Sed0018687 Sechium edule HOM05D001536 ORTHO05D001442 7.7e-06 56.6 171 29.8
HPP92_023674 Vanilla planifolia HOM05D004032 ORTHO05D004462 7.7e-06 56.6 134 29.9
HPP92_023691 Vanilla planifolia HOM05D004032 ORTHO05D004462 7.7e-06 56.6 134 29.9
Zm00001eb214520 Zea mays HOM05D001536 ORTHO05D001442 7.7e-06 56.6 117 34.2


User provided reference genes

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