Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000256 Sechium edule HOM05D006108 ORTHO05D007605 4.5e-91 337.8 158 100.0
CsaV3_6G003400 Cucumis sativus L. HOM05D006108 ORTHO05D007605 9.5e-41 170.6 189 56.1
Sed0027931 Sechium edule HOM05D006108 ORTHO05D007605 6.4e-29 131.3 122 63.1
Glyma.01G082600 Glycine max HOM05D006108 ORTHO05D007605 5.0e-26 121.7 73 78.1
ClCG08G005220 Citrullus lanatus HOM05D006108 ORTHO05D007605 1.5e-25 120.2 181 49.7
Phvul.003G034700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 4.3e-25 118.6 76 71.1
Duzib248G0641 Durio zibethinus HOM05D006108 ORTHO05D007605 4.0e-23 112.1 79 64.6
Medtr5g055190 Medicago truncatula HOM05D006108 ORTHO05D007605 4.0e-23 112.1 79 67.1
TPR.G38355 Trifolium pratense HOM05D006108 ORTHO05D007605 4.0e-23 112.1 83 65.1
AL5G14490 Arabidopsis lyrata HOM05D006108 ORTHO05D007605 6.8e-23 111.3 84 57.1
Lsat_1_v5_gn_8_39200 Lactuca sativa HOM05D006108 ORTHO05D007605 1.5e-22 110.2 71 70.4
Ciclev10033455m.g Citrus clementina HOM05D006108 ORTHO05D007605 2.6e-22 109.4 80 67.5
MELO3C011555.2 Cucumis melo HOM05D006108 ORTHO05D007605 2.6e-22 109.4 153 51.6
Prupe.1G308800 Prunus persica HOM05D006108 ORTHO05D007605 2.6e-22 109.4 73 64.4
HanXRQChr02g0058721 Helianthus annuus HOM05D006108 ORTHO05D007605 4.4e-22 108.6 70 70.0
CARHR146800 Cardamine hirsuta HOM05D006108 ORTHO05D007605 5.8e-22 108.2 80 58.8
Psat2g097920 Pisum sativum HOM05D006108 ORTHO05D007605 7.5e-22 107.8 78 64.1
A02p34100 Brassica napus HOM05D006108 ORTHO05D007605 9.8e-22 107.5 115 46.1
CiPaw.15G083500 Carya illinoinensis HOM05D006108 ORTHO05D007605 9.8e-22 107.5 81 60.5
Migut.L01077 Erythranthe guttata HOM05D006108 ORTHO05D007605 9.8e-22 107.5 70 65.7
MD13G1043700 Malus domestica HOM05D006108 ORTHO05D007605 9.8e-22 107.5 72 65.3
Sp2g15090 Schrenkiella parvula HOM05D006108 ORTHO05D007605 9.8e-22 107.5 84 54.8
THA.LOC104824033 Tarenaya hassleriana HOM05D006108 ORTHO05D007605 9.8e-22 107.5 75 66.7
TWI79G0681 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 9.8e-22 107.5 72 66.7
Dinv04481 Davidia involucrata HOM05D001580 ORTHO05D001517 1.3e-21 107.1 81 63.0
Manes.14G100500 Manihot esculenta HOM05D006108 ORTHO05D007605 1.3e-21 107.1 82 59.8
QL01p043861 Quercus lobata HOM05D006108 ORTHO05D007605 1.3e-21 107.1 81 63.0
AT3G25855 Arabidopsis thaliana HOM05D006108 ORTHO05D007605 2.2e-21 106.3 84 54.8
BcaC03g17291 Brassica carinata HOM05D006108 ORTHO05D007605 2.2e-21 106.3 76 60.5
BolC2t11319H Brassica oleracea HOM05D006108 ORTHO05D007605 2.2e-21 106.3 76 60.5
Lj2g0013090 Lotus japonicus HOM05D006108 ORTHO05D007605 2.2e-21 106.3 71 66.2
Lalb_Chr10g0099931 Lupinus albus HOM05D006108 ORTHO05D007605 2.2e-21 106.3 85 61.2
Manes.06G070100 Manihot esculenta HOM05D006108 ORTHO05D007605 2.9e-21 105.9 70 65.7
Oeu041896.1 Olea europaea HOM05D006108 ORTHO05D007605 2.9e-21 105.9 70 71.4
Potri.008G119200 Populus trichocarpa HOM05D006108 ORTHO05D007605 2.9e-21 105.9 72 66.7
Sabra08G0090500 Salix brachista HOM05D006108 ORTHO05D007605 2.9e-21 105.9 72 68.1
A06p42440 Brassica napus HOM05D006108 ORTHO05D007605 3.7e-21 105.5 82 57.3
BraA06t27159Z Brassica rapa HOM05D006108 ORTHO05D007605 3.7e-21 105.5 82 57.3
Cc11_g10300 Coffea canephora HOM05D006108 ORTHO05D007605 3.7e-21 105.5 92 62.0
COL.COLO4_07905 Corchorus olitorius HOM05D001580 ORTHO05D001517 3.7e-21 105.5 79 62.0
RcHm_v2.0_Chr4g0435471 Rosa chinensis HOM05D006108 ORTHO05D007605 3.7e-21 105.5 87 57.5
TWI31G1391 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 3.7e-21 105.5 84 59.5
BcaB07g30252 Brassica carinata HOM05D006108 ORTHO05D007605 4.9e-21 105.1 78 56.4
BcaC06g33947 Brassica carinata HOM05D006108 ORTHO05D007605 4.9e-21 105.1 87 56.3
DCAR_026728 Daucus carota HOM05D006108 ORTHO05D007605 4.9e-21 105.1 70 65.7
CSS0049683 Camellia sinensis var. sinensis HOM05D006108 ORTHO05D007605 8.3e-21 104.4 74 66.2
Oeu008040.1 Olea europaea HOM05D006108 ORTHO05D007605 8.3e-21 104.4 70 67.1
Carub.0005s0368 Capsella rubella HOM05D006108 ORTHO05D007605 2.4e-20 102.8 94 51.1
C02p52370 Brassica napus HOM05D006108 ORTHO05D007605 3.2e-20 102.4 73 60.3
BolC7t44019H Brassica oleracea HOM05D006108 ORTHO05D007605 3.2e-20 102.4 87 55.2
C07p34870 Brassica napus HOM05D006108 ORTHO05D007605 5.4e-20 101.7 87 54.0
Dinv09807 Davidia involucrata HOM05D006108 ORTHO05D007605 7.0e-20 101.3 74 62.2
Thhalv10005176m.g Eutrema salsugineum HOM05D006108 ORTHO05D007605 7.0e-20 101.3 97 49.5
PSO017G5628 Papaver somniferum HOM05D006108 ORTHO05D007605 7.0e-20 101.3 68 67.6
BraA02t08427Z Brassica rapa HOM05D006108 ORTHO05D007605 9.2e-20 100.9 105 46.7
CAN.G388.38 Capsicum annuum HOM05D006108 ORTHO05D007605 9.2e-20 100.9 86 59.3
FAN13G1808 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.2e-20 100.9 81 58.0
FAN18G0723 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.2e-20 100.9 81 58.0
FAN18G1336 Fragaria x ananassa HOM05D006108 ORTHO05D007605 9.2e-20 100.9 81 58.0
PGR102G2516 Punica granatum HOM05D006108 ORTHO05D007605 9.2e-20 100.9 69 66.7
BcaC06g31111 Brassica carinata HOM05D006108 ORTHO05D007605 1.2e-19 100.5 71 60.6
Gorai.008G184200 Gossypium raimondii HOM05D006108 ORTHO05D007605 2.0e-19 99.8 78 59.0
Lj2g0017619 Lotus japonicus HOM05D006108 ORTHO05D007605 2.0e-19 99.8 99 49.5
RcHm_v2.0_Chr7g0185241 Rosa chinensis HOM05D006108 ORTHO05D007605 2.0e-19 99.8 73 60.3
FAN07G1587 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.7e-19 99.4 85 56.5
Prupe.5G220300 Prunus persica HOM05D006108 ORTHO05D007605 2.7e-19 99.4 95 51.6
TPR.G35239 Trifolium pratense HOM05D006108 ORTHO05D007605 2.7e-19 99.4 74 58.1
FvH4_5g12320 Fragaria vesca HOM05D006108 ORTHO05D007605 3.5e-19 99.0 70 61.4
Gohir.A09G177600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.5e-19 99.0 71 64.8
Gohir.D09G173100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 3.5e-19 99.0 71 64.8
Gorai.006G195000 Gossypium raimondii HOM05D006108 ORTHO05D007605 3.5e-19 99.0 71 64.8
Nitab4.5_0003285g0040 Nicotiana tabacum HOM05D006108 ORTHO05D007605 3.5e-19 99.0 82 58.5
VMungo0464G0155 Vigna mungo HOM05D006108 ORTHO05D007605 3.5e-19 99.0 74 56.8
GSVIVG01008271001 Vitis vinifera HOM05D006108 ORTHO05D007605 3.5e-19 99.0 80 57.5
Psat6g222560 Pisum sativum HOM05D006108 ORTHO05D007605 6.0e-19 98.2 74 56.8
Nitab4.5_0001914g0010 Nicotiana tabacum HOM05D006108 ORTHO05D007605 7.8e-19 97.8 67 65.7
Sc14g0007540 Simmondsia chinensis HOM05D006108 ORTHO05D007605 7.8e-19 97.8 93 51.6
Eucgr.B03028 Eucalyptus grandis HOM05D006108 ORTHO05D007605 1.0e-18 97.4 88 51.1
Atru.chr9.818 Acer truncatum HOM05D006108 ORTHO05D007605 1.3e-18 97.1 72 61.1
Glyma.07G090500 Glycine max HOM05D006108 ORTHO05D007605 1.3e-18 97.1 85 52.9
Glyma.09G185400 Glycine max HOM05D006108 ORTHO05D007605 1.3e-18 97.1 85 50.6
MD16G1044500 Malus domestica HOM05D006108 ORTHO05D007605 1.3e-18 97.1 68 58.8
FAN08G0393 Fragaria x ananassa HOM05D006108 ORTHO05D007605 1.7e-18 96.7 81 55.6
Gohir.A12G168100 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.7e-18 96.7 77 58.4
FAN22G0059 Fragaria x ananassa HOM05D006108 ORTHO05D007605 2.3e-18 96.3 82 57.3
Rhsim12G0143800 Rhododendron simsii HOM05D006108 ORTHO05D007605 2.3e-18 96.3 75 58.7
Thecc.03G033400 Theobroma cacao HOM05D006108 ORTHO05D007605 3.0e-18 95.9 73 61.6
Manes.05G140027 Manihot esculenta HOM05D006108 ORTHO05D007605 3.9e-18 95.5 76 57.9
Sopen05g012490 Solanum pennellii HOM05D006108 ORTHO05D007605 3.9e-18 95.5 75 60.0
QL10p025064 Quercus lobata HOM05D006108 ORTHO05D007605 5.0e-18 95.1 70 61.4
TAR371G1266 Trochodendron aralioides HOM05D006108 ORTHO05D007605 5.0e-18 95.1 69 60.9
Duzib084G1067 Durio zibethinus HOM05D006108 ORTHO05D007605 8.6e-18 94.4 71 60.6
Gohir.D12G171700 Gossypium hirsutum HOM05D006108 ORTHO05D007605 8.6e-18 94.4 77 58.4
CiPaw.15G129300 Carya illinoinensis HOM05D006108 ORTHO05D007605 1.9e-17 93.2 72 59.7
Phvul.004G158700 Phaseolus vulgaris HOM05D006108 ORTHO05D007605 1.9e-17 93.2 74 52.7
Ciclev10022919m.g Citrus clementina HOM05D006108 ORTHO05D007605 4.3e-17 92.0 74 58.1
Eucgr.B00718 Eucalyptus grandis HOM05D006108 ORTHO05D007605 4.3e-17 92.0 73 53.4
Nn3g17803 Nelumbo nucifera HOM05D006108 ORTHO05D007605 9.5e-17 90.9 82 50.0
Gohir.A09G047400 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-16 90.5 90 48.9
Gohir.D09G048600 Gossypium hirsutum HOM05D006108 ORTHO05D007605 1.2e-16 90.5 90 48.9
Gorai.006G061500 Gossypium raimondii HOM05D006108 ORTHO05D007605 1.2e-16 90.5 90 48.9
MD06G1214900 Malus domestica HOM05D006108 ORTHO05D007605 1.2e-16 90.5 69 60.9
arahy.Tifrunner.gnm1.ann1.1V8BDZ Arachis hypogaea HOM05D006108 ORTHO05D007605 1.6e-16 90.1 72 56.9
arahy.Tifrunner.gnm1.ann1.L19XPP Arachis hypogaea HOM05D006108 ORTHO05D007605 1.6e-16 90.1 72 56.9
MD14G1225800 Malus domestica HOM05D006108 ORTHO05D007605 2.1e-16 89.7 97 48.5
Cfa019791 Carpinus fangiana HOM05D006108 ORTHO05D007605 3.6e-16 89.0 89 52.8
CsaV3_1G006560 Cucumis sativus L. HOM05D006108 ORTHO05D007605 3.6e-16 89.0 68 60.3
Actinidia35084 Actinidia chinensis HOM05D006108 ORTHO05D007605 4.7e-16 88.6 71 57.7
FAN12G0874 Fragaria x ananassa HOM05D006108 ORTHO05D007605 8.1e-16 87.8 89 51.7
CDE05G0497 Ceratophyllum demersum HOM05D006108 ORTHO05D007605 1.1e-15 87.4 76 52.6
Os09g0408550 Oryza sativa ssp. japonica HOM05D006108 ORTHO05D007605 2.3e-15 86.3 71 52.1
HPP92_026959 Vanilla planifolia HOM05D006108 ORTHO05D007605 2.3e-15 86.3 77 50.6
Nn4g23806 Nelumbo nucifera HOM05D006108 ORTHO05D007605 3.1e-15 85.9 68 52.9
Nitab4.5_0001599g0060 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.9e-15 84.3 83 49.4
Nitab4.5_0004412g0100 Nicotiana tabacum HOM05D006108 ORTHO05D007605 8.9e-15 84.3 83 49.4
Sed0021850 Sechium edule HOM05D006108 ORTHO05D007605 1.2e-14 84.0 72 56.9
PGSC0003DMG402005714 Solanum tuberosum HOM05D006108 ORTHO05D007605 1.2e-14 84.0 85 49.4
Sopen03g038460 Solanum pennellii HOM05D006108 ORTHO05D007605 1.5e-14 83.6 71 54.9
Zm00001eb099300 Zea mays HOM05D006108 ORTHO05D007605 2.0e-14 83.2 75 52.0
Cpa.g.sc1.185 Carica papaya HOM05D006108 ORTHO05D007605 2.2e-13 79.7 64 56.2
ECA233G5877 Erigeron canadensis HOM05D006108 ORTHO05D007605 4.1e-12 75.5 55 63.6
Hund05757 Selenicereus undatus HOM05D006108 ORTHO05D007605 6.0e-11 71.6 59 61.0
Rhsim09G0109500 Rhododendron simsii HOM05D006290 ORTHO05D007734 6.6e-10 68.2 63 55.6
arahy.Tifrunner.gnm1.ann1.384K0G Arachis hypogaea HOM05D006108 ORTHO05D007605 1.2e-08 63.9 52 57.7
Peaxi162Scf00015g00844 Petunia axillaris HOM05D006108 ORTHO05D007605 2.8e-08 62.8 56 53.6
PGSC0003DMG400010902 Solanum tuberosum HOM05D006108 ORTHO05D007605 2.3e-07 59.7 51 56.9
ClCG04G011190 Citrullus lanatus HOM05D006108 ORTHO05D007605 4.0e-07 58.9 43 60.5
FAN04G0077 Fragaria x ananassa HOM05D006108 ORTHO05D007605 4.0e-07 58.9 56 53.6
CAN.G438.131 Capsicum annuum HOM05D006108 ORTHO05D007605 5.2e-07 58.5 45 60.0
Haze_01037 Corylus avellana HOM05D000039 ORTHO05D000366 5.2e-07 58.5 89 31.5
Duzib151G0401 Durio zibethinus HOM05D009285 ORTHO05D009865 4.4e-06 55.5 79 32.9
TWI15G1195 Tripterygium wilfordii HOM05D006108 ORTHO05D007605 5.8e-06 55.1 43 55.8
Zm00001eb078160 Zea mays HOM05D000262 ORTHO05D009865 5.8e-06 55.1 70 38.6


User provided reference genes

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