Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000251 Sechium edule HOM05D007333 ORTHO05D008874 3.9e-58 228.0 124 100.0
CsaV3_2G032900 Cucumis sativus L. HOM05D007333 ORTHO05D008874 4.3e-41 171.4 103 79.6
MELO3C019874.2 Cucumis melo HOM05D007333 ORTHO05D008874 6.3e-40 167.5 103 78.6
ClCG08G008020 Citrullus lanatus HOM05D007333 ORTHO05D008874 1.2e-38 163.3 107 75.7
RcHm_v2.0_Chr1g0334731 Rosa chinensis HOM05D007333 ORTHO05D008874 1.6e-19 99.8 106 48.1
SalBow6G6510 Salvia bowleyana HOM05D007333 ORTHO05D008874 6.1e-19 97.8 117 41.9
CANSAT56G1926 Cannabis sativa HOM05D007333 ORTHO05D008874 1.8e-18 96.3 110 49.1
Prupe.2G091100 Prunus persica HOM05D007333 ORTHO05D008874 1.2e-17 93.6 117 46.2
FAN01G0324 Fragaria x ananassa HOM05D007333 ORTHO05D008874 7.5e-17 90.9 106 43.4
FAN03G1611 Fragaria x ananassa HOM05D007333 ORTHO05D008874 7.5e-17 90.9 106 43.4
FAN06G2923 Fragaria x ananassa HOM05D007333 ORTHO05D008874 7.5e-17 90.9 106 43.4
FAN10G2394 Fragaria x ananassa HOM05D007333 ORTHO05D008874 7.5e-17 90.9 106 43.4
Potri.010G233400 Populus trichocarpa HOM05D007333 ORTHO05D008874 1.7e-16 89.7 110 41.8
Manes.07G092300 Manihot esculenta HOM05D007333 ORTHO05D008874 4.8e-16 88.2 110 44.5
TWI63G0473 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 6.3e-16 87.8 101 44.6
Migut.F01662 Erythranthe guttata HOM05D007333 ORTHO05D008874 2.4e-15 85.9 114 38.6
CiPaw.14G027900 Carya illinoinensis HOM05D007333 ORTHO05D008874 3.1e-15 85.5 117 44.4
TWI38G1382 Tripterygium wilfordii HOM05D007333 ORTHO05D008874 7.0e-15 84.3 99 45.5
arahy.Tifrunner.gnm1.ann1.YB4FNL Arachis hypogaea HOM05D007333 ORTHO05D008874 1.6e-14 83.2 106 46.2
arahy.Tifrunner.gnm1.ann1.N9I1MN Arachis hypogaea HOM05D007333 ORTHO05D008874 2.0e-14 82.8 106 46.2
Manes.10G054600 Manihot esculenta HOM05D007333 ORTHO05D008874 3.5e-14 82.0 116 41.4
PGR044G2090 Punica granatum HOM05D007333 ORTHO05D008874 3.5e-14 82.0 108 45.4
MSTRG.408 Avicennia marina HOM05D007333 ORTHO05D008874 4.5e-14 81.6 97 40.2
Ciclev10032982m.g Citrus clementina HOM05D007333 ORTHO05D008874 1.0e-13 80.5 108 44.4
VMungo0720G1448 Vigna mungo HOM05D007333 ORTHO05D008874 1.3e-13 80.1 114 37.7
COL.COLO4_34172 Corchorus olitorius HOM05D007333 ORTHO05D008874 6.5e-13 77.8 99 43.4
Sc20g0001370 Simmondsia chinensis HOM05D007333 ORTHO05D008874 6.5e-13 77.8 100 43.0
Gohir.D05G290801 Gossypium hirsutum HOM05D007333 ORTHO05D008874 8.5e-13 77.4 104 39.4
Gorai.009G305900 Gossypium raimondii HOM05D007333 ORTHO05D008874 8.5e-13 77.4 104 39.4
Thecc.10G097500 Theobroma cacao HOM05D007333 ORTHO05D008874 8.5e-13 77.4 104 39.4
Atru.chr12.950 Acer truncatum HOM05D007333 ORTHO05D008874 1.5e-12 76.6 123 38.2
Glyma.10G201500 Glycine max HOM05D007333 ORTHO05D008874 1.5e-12 76.6 110 37.3
Glyma.20G188900 Glycine max HOM05D007333 ORTHO05D008874 1.5e-12 76.6 102 39.2
DCAR_019045 Daucus carota HOM05D007333 ORTHO05D008874 1.9e-12 76.3 107 42.1
Oeu015044.1 Olea europaea HOM05D007333 ORTHO05D008874 1.9e-12 76.3 114 36.8
Dinv31280 Davidia involucrata HOM05D007333 ORTHO05D008874 3.2e-12 75.5 114 41.2
Duzib114G0443 Durio zibethinus HOM05D007333 ORTHO05D008874 7.2e-12 74.3 106 39.6
Oeu030485.1 Olea europaea HOM05D007333 ORTHO05D008874 7.2e-12 74.3 115 36.5
Phvul.007G105600 Phaseolus vulgaris HOM05D007333 ORTHO05D008874 1.2e-11 73.6 114 38.6
GSVIVG01034686001 Vitis vinifera HOM05D007333 ORTHO05D008874 1.2e-11 73.6 111 38.7
Sabra10G0181000 Salix brachista HOM05D007333 ORTHO05D008874 2.1e-11 72.8 130 34.6
Ah.06g184540 Amaranthus hybridus HOM05D007333 ORTHO05D008874 2.7e-11 72.4 106 34.9
Lj5g0012880 Lotus japonicus HOM05D007333 ORTHO05D008874 2.7e-11 72.4 124 39.5
Peaxi162Scf00398g00057 Petunia axillaris HOM05D007333 ORTHO05D008874 2.7e-11 72.4 108 40.7
Eucgr.J01027 Eucalyptus grandis HOM05D007333 ORTHO05D008874 3.6e-11 72.0 62 53.2
Nitab4.5_0000593g0040 Nicotiana tabacum HOM05D007333 ORTHO05D008874 4.7e-11 71.6 97 42.3
Dinv20855 Davidia involucrata HOM05D007333 ORTHO05D008874 6.1e-11 71.2 114 35.1
Gohir.A05G289401 Gossypium hirsutum HOM05D007333 ORTHO05D008874 6.1e-11 71.2 104 37.5
Medtr1g492630 Medicago truncatula HOM05D007333 ORTHO05D008874 6.1e-11 71.2 114 41.2
SGA_v2.0_scaffold62G21322 Striga asiatica HOM05D007333 ORTHO05D008874 1.0e-10 70.5 120 32.5
PGSC0003DMG402027350 Solanum tuberosum HOM05D007333 ORTHO05D008874 1.4e-10 70.1 87 40.2
THA.LOC104823559 Tarenaya hassleriana HOM05D007333 ORTHO05D008874 1.4e-10 70.1 112 41.1
Cpa.g.sc128.62 Carica papaya HOM05D007333 ORTHO05D008874 1.8e-10 69.7 112 42.9
Hma1.2p1_0567F.1_g180010 Hydrangea macrophylla HOM05D007333 ORTHO05D008874 1.8e-10 69.7 105 39.0
Lsat_1_v5_gn_8_23060 Lactuca sativa HOM05D007333 ORTHO05D008874 1.8e-10 69.7 120 37.5
Lalb_Chr21g0313181 Lupinus albus HOM05D007333 ORTHO05D008874 1.8e-10 69.7 61 54.1
Solyc11g007680.2 Solanum lycopersicum HOM05D007333 ORTHO05D008874 1.8e-10 69.7 87 41.4
Sopen11g003540 Solanum pennellii HOM05D007333 ORTHO05D008874 1.8e-10 69.7 87 41.4
Ca_10485_v3 Cicer arietinum L. HOM05D007333 ORTHO05D008874 2.3e-10 69.3 115 38.3
Nitab4.5_0003408g0030 Nicotiana tabacum HOM05D007333 ORTHO05D008874 2.3e-10 69.3 98 41.8
Medtr1g492600 Medicago truncatula HOM05D007333 ORTHO05D008874 4.0e-10 68.6 114 40.4
vmacro10268 Vaccinium macrocarpon HOM05D007333 ORTHO05D008874 5.2e-10 68.2 109 35.8
Duzib128G0626 Durio zibethinus HOM05D007333 ORTHO05D008874 6.8e-10 67.8 104 35.6
Actinidia38900 Actinidia chinensis HOM05D007333 ORTHO05D008874 8.8e-10 67.4 97 40.2
BcaC07g39593 Brassica carinata HOM05D007333 ORTHO05D008874 1.2e-09 67.0 81 46.9
BolC8t50364H Brassica oleracea HOM05D007333 ORTHO05D008874 1.2e-09 67.0 90 45.6
Actinidia34782 Actinidia chinensis HOM05D007333 ORTHO05D008874 1.5e-09 66.6 105 38.1
AL5G32820 Arabidopsis lyrata HOM05D007333 ORTHO05D008874 1.5e-09 66.6 90 44.4
C08p27470 Brassica napus HOM05D007333 ORTHO05D008874 1.5e-09 66.6 81 46.9
CARHR162000 Cardamine hirsuta HOM05D007333 ORTHO05D008874 2.0e-09 66.2 97 44.3
Cc02_g10320 Coffea canephora HOM05D007333 ORTHO05D008874 2.0e-09 66.2 72 47.2
Aa31LG10G7320 Aethionema arabicum HOM05D007333 ORTHO05D008874 2.6e-09 65.9 92 42.4
A09p45290 Brassica napus HOM05D007333 ORTHO05D008874 2.6e-09 65.9 106 43.4
BraA09t39992Z Brassica rapa HOM05D007333 ORTHO05D008874 3.4e-09 65.5 106 43.4
Carub.0005s1859 Capsella rubella HOM05D007333 ORTHO05D008874 3.4e-09 65.5 95 43.2
TAR633G0429 Trochodendron aralioides HOM05D007333 ORTHO05D008874 4.4e-09 65.1 91 38.5
AT3G52230 Arabidopsis thaliana HOM05D007333 ORTHO05D008874 5.7e-09 64.7 94 43.6
unitig_746.g26629 Utricularia gibba HOM05D007333 ORTHO05D008874 7.5e-09 64.3 67 43.3
TPR.G2540 Trifolium pratense HOM05D007333 ORTHO05D008874 3.7e-08 62.0 64 45.3
Lalb_Chr06g0170141 Lupinus albus HOM05D007333 ORTHO05D008874 4.9e-08 61.6 105 38.1
Sp5g10030 Schrenkiella parvula HOM05D007333 ORTHO05D008874 4.9e-08 61.6 92 41.3
Thhalv10010807m.g Eutrema salsugineum HOM05D007333 ORTHO05D008874 6.3e-08 61.2 85 42.4
ECA233G0976 Erigeron canadensis HOM05D007333 ORTHO05D008874 8.3e-08 60.8 96 39.6
Psat6g175280 Pisum sativum HOM05D007333 ORTHO05D008874 8.3e-08 60.8 111 32.4
HanXRQChr14g0456271 Helianthus annuus HOM05D007333 ORTHO05D008874 1.4e-07 60.1 95 36.8
ECA238G3189 Erigeron canadensis HOM05D007333 ORTHO05D008874 1.8e-07 59.7 46 50.0
Aqoxy2G01500 Aquilegia oxysepala HOM05D007333 ORTHO05D008874 2.4e-07 59.3 102 34.3
HanXRQChr08g0218141 Helianthus annuus HOM05D007333 ORTHO05D008874 3.1e-07 58.9 112 35.7
A04p07130 Brassica napus HOM05D007333 ORTHO05D008874 1.2e-06 57.0 49 55.1
Nn2g13958 Nelumbo nucifera HOM05D007333 ORTHO05D008874 7.7e-06 54.3 96 33.3


User provided reference genes

Program Settings