Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000182 Sechium edule HOM05D004299 ORTHO05D003557 0.0e+00 1422.1 945 100.0
ClCG01G005040 Citrullus lanatus HOM05D013728 ORTHO05D003557 5.5e-136 489.6 963 42.2
CsaV3_5G005290 Cucumis sativus L. HOM05D013728 ORTHO05D003557 8.2e-124 449.1 961 40.0
MELO3C005430.2 Cucumis melo HOM05D013728 ORTHO05D003557 2.9e-121 440.7 964 40.6
Sed0018309 Sechium edule HOM05D004299 ORTHO05D003557 5.7e-101 373.2 951 41.2
CsaV3_5G015680 Cucumis sativus L. HOM05D004299 ORTHO05D003557 2.3e-81 308.1 254 69.3
Haze_00596 Corylus avellana HOM05D004299 ORTHO05D003557 3.5e-34 151.4 261 44.1
ClCG01G022640 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.3e-33 148.7 177 58.8
Sed0014700 Sechium edule HOM05D013728 ORTHO05D003557 2.8e-31 141.7 160 56.9
CiPaw.05G237300 Carya illinoinensis HOM05D004299 ORTHO05D003557 4.5e-29 134.4 392 34.7
Cpa.g.sc39.57 Carica papaya HOM05D004299 ORTHO05D003557 1.9e-27 129.0 254 40.2
TPR.G8414 Trifolium pratense HOM05D004299 ORTHO05D003557 1.9e-27 129.0 267 38.6
Glyma.12G018900 Glycine max HOM05D004299 ORTHO05D003557 2.5e-27 128.6 272 40.1
Cfa015894 Carpinus fangiana HOM05D004299 ORTHO05D003557 3.2e-27 128.3 261 41.4
Gohir.D08G243500 Gossypium hirsutum HOM05D004299 ORTHO05D003557 3.2e-27 128.3 241 42.7
QL09p025753 Quercus lobata HOM05D004299 ORTHO05D003557 3.2e-27 128.3 430 31.6
Gorai.004G259400 Gossypium raimondii HOM05D004299 ORTHO05D003557 9.4e-27 126.7 241 42.3
Gohir.A08G223300 Gossypium hirsutum HOM05D004299 ORTHO05D003557 1.6e-26 125.9 245 42.4
Medtr4g077590 Medicago truncatula HOM05D004299 ORTHO05D003557 2.7e-26 125.2 226 42.5
Actinidia34301 Actinidia chinensis HOM05D004299 ORTHO05D003557 4.6e-26 124.4 258 38.8
Peaxi162Scf00815g00349 Petunia axillaris HOM05D004299 ORTHO05D003557 6.7e-25 120.6 264 39.8
Duzib106G1502 Durio zibethinus HOM05D004299 ORTHO05D003557 8.8e-25 120.2 230 42.6
Actinidia08739 Actinidia chinensis HOM05D004299 ORTHO05D003557 1.5e-24 119.4 249 39.0
Glyma.11G092600 Glycine max HOM05D004299 ORTHO05D003557 1.5e-24 119.4 218 42.7
PGR042G3162 Punica granatum HOM05D004299 ORTHO05D003557 3.3e-24 118.2 229 40.6
CSS0010494 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 1.7e-23 115.9 363 33.9
Manes.09G124200 Manihot esculenta HOM05D004299 ORTHO05D003557 8.2e-23 113.6 261 37.5
COL.COLO4_06387 Corchorus olitorius HOM05D004299 ORTHO05D003557 3.1e-22 111.7 259 37.1
Lj3g0021850 Lotus japonicus HOM05D004299 ORTHO05D003557 6.9e-22 110.5 315 34.6
CSS0016343 Camellia sinensis var. sinensis HOM05D004299 ORTHO05D003557 9.1e-22 110.2 363 32.8
Thecc.05G208300 Theobroma cacao HOM05D004299 ORTHO05D003557 9.1e-22 110.2 452 29.9
AT3G03130 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 2.6e-21 108.6 215 43.7
Psat7g171480 Pisum sativum HOM05D004299 ORTHO05D003557 2.6e-21 108.6 259 35.5
Nitab4.5_0002193g0040 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.4e-21 108.2 255 38.4
vmacro06502 Vaccinium macrocarpon HOM05D004299 ORTHO05D003557 3.4e-21 108.2 382 30.4
arahy.Tifrunner.gnm1.ann1.R3QID6 Arachis hypogaea HOM05D004299 ORTHO05D003557 4.5e-21 107.8 463 29.4
Manes.08G164200 Manihot esculenta HOM05D004299 ORTHO05D003557 4.5e-21 107.8 227 40.1
Atru.chr12.1996 Acer truncatum HOM05D004299 ORTHO05D003557 7.7e-21 107.1 232 38.8
Solyc06g072810.4 Solanum lycopersicum HOM05D004299 ORTHO05D003557 1.3e-20 106.3 261 39.1
Phvul.011G021300 Phaseolus vulgaris HOM05D004299 ORTHO05D003557 1.7e-20 105.9 279 36.6
Sabra13G0071500 Salix brachista HOM05D004299 ORTHO05D003557 1.7e-20 105.9 263 36.1
Lsat_1_v5_gn_3_37901 Lactuca sativa HOM05D004299 ORTHO05D003557 2.9e-20 105.1 218 38.5
GSVIVG01024444001 Vitis vinifera HOM05D004299 ORTHO05D003557 2.9e-20 105.1 256 35.2
Ca_04929_v3 Cicer arietinum L. HOM05D004299 ORTHO05D003557 5.0e-20 104.4 214 37.9
MSTRG.13 Avicennia marina HOM05D004299 ORTHO05D003557 1.1e-19 103.2 247 37.7
Carub.0003s0228 Capsella rubella HOM05D004299 ORTHO05D003557 1.4e-19 102.8 213 40.8
CARHR077150 Cardamine hirsuta HOM05D004299 ORTHO05D003557 1.4e-19 102.8 261 41.0
MD01G1233900 Malus domestica HOM05D004299 ORTHO05D003557 1.9e-19 102.4 482 28.6
Eucgr.G02658 Eucalyptus grandis HOM05D004299 ORTHO05D003557 2.5e-19 102.1 458 27.9
RcHm_v2.0_Chr1g0383881 Rosa chinensis HOM05D012506 ORTHO05D003557 2.5e-19 102.1 340 31.2
Nitab4.5_0000115g0360 Nicotiana tabacum HOM05D004299 ORTHO05D003557 4.2e-19 101.3 423 29.8
Oeu061066.1 Olea europaea HOM05D004299 ORTHO05D003557 4.2e-19 101.3 492 27.0
Aa31LG5G13610 Aethionema arabicum HOM05D004299 ORTHO05D003557 5.5e-19 100.9 210 40.0
arahy.Tifrunner.gnm1.ann1.KHZX7Q Arachis hypogaea HOM05D004299 ORTHO05D003557 5.5e-19 100.9 511 28.6
Dinv29171 Davidia involucrata HOM05D004299 ORTHO05D003557 5.5e-19 100.9 132 48.5
Nitab4.5_0000021g0310 Nicotiana tabacum HOM05D004299 ORTHO05D003557 9.4e-19 100.1 421 30.9
Potri.013G081600 Populus trichocarpa HOM05D004299 ORTHO05D003557 1.2e-18 99.8 268 35.4
Migut.F00952 Erythranthe guttata HOM05D004299 ORTHO05D003557 2.1e-18 99.0 371 30.7
Prupe.2G324100 Prunus persica HOM05D004299 ORTHO05D003557 2.1e-18 99.0 376 29.3
Sabra19G0058100 Salix brachista HOM05D004299 ORTHO05D003557 2.1e-18 99.0 399 27.3
Sopen06g029190 Solanum pennellii HOM05D004299 ORTHO05D003557 2.1e-18 99.0 400 31.0
PGSC0003DMG400026934 Solanum tuberosum HOM05D004299 ORTHO05D003557 2.1e-18 99.0 402 31.8
Nitab4.5_0005081g0100 Nicotiana tabacum HOM05D004299 ORTHO05D003557 3.6e-18 98.2 443 31.6
Lj3A889G76 Lonicera japonica HOM05D004299 ORTHO05D003557 4.7e-18 97.8 353 32.0
BolC2t06791H Brassica oleracea HOM05D004299 ORTHO05D003557 6.1e-18 97.4 245 31.4
Sp3g02170 Schrenkiella parvula HOM05D004299 ORTHO05D003557 6.1e-18 97.4 429 31.5
BcaB01g04949 Brassica carinata HOM05D004299 ORTHO05D003557 1.0e-17 96.7 228 35.5
Thhalv10013127m.g Eutrema salsugineum HOM05D004299 ORTHO05D003557 1.0e-17 96.7 255 31.8
AL3G12740 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.4e-17 96.3 463 32.8
Rhsim03G0220700 Rhododendron simsii HOM05D004299 ORTHO05D003557 1.4e-17 96.3 231 35.9
ECA247G1921 Erigeron canadensis HOM05D004299 ORTHO05D003557 1.8e-17 95.9 249 34.9
ECA246G3276 Erigeron canadensis HOM05D004299 ORTHO05D003557 3.0e-17 95.1 228 33.8
Hma1.2p1_0758F.1_g213620 Hydrangea macrophylla HOM05D004299 ORTHO05D003557 3.0e-17 95.1 217 38.7
CARHR196070 Cardamine hirsuta HOM05D004299 ORTHO05D003557 3.9e-17 94.7 228 34.6
Potri.019G046801 Populus trichocarpa HOM05D004299 ORTHO05D003557 8.8e-17 93.6 406 29.1
TWI34G1775 Tripterygium wilfordii HOM05D004299 ORTHO05D003557 8.8e-17 93.6 240 35.8
AL6G28200 Arabidopsis lyrata HOM05D004299 ORTHO05D003557 1.1e-16 93.2 221 37.1
C03p09520 Brassica napus HOM05D004299 ORTHO05D003557 2.0e-16 92.4 229 37.6
DCAR_014573 Daucus carota HOM05D004299 ORTHO05D003557 2.6e-16 92.0 199 34.2
Aqoxy3G02070 Aquilegia oxysepala HOM05D004299 ORTHO05D003557 5.7e-16 90.9 270 34.4
BcaC04g18829 Brassica carinata HOM05D004299 ORTHO05D003557 5.7e-16 90.9 211 38.4
BcaB08g36802 Brassica carinata HOM05D004299 ORTHO05D003557 7.4e-16 90.5 410 30.5
Duzib128G1020 Durio zibethinus HOM05D004299 ORTHO05D003557 9.7e-16 90.1 127 45.7
C03p60040 Brassica napus HOM05D004299 ORTHO05D003557 3.7e-15 88.2 161 37.3
BolC3t18269H Brassica oleracea HOM05D004299 ORTHO05D003557 3.7e-15 88.2 161 37.3
FAN10G0189 Fragaria x ananassa HOM05D012506 ORTHO05D003557 3.7e-15 88.2 258 31.4
EL10Ac3g05093 Beta vulgaris HOM05D022644 ORTHO05D003557 4.8e-15 87.8 162 37.0
MELO3C026562.2 Cucumis melo HOM05D004299 ORTHO05D003557 4.8e-15 87.8 101 53.5
Peaxi162Scf00745g00852 Petunia axillaris HOM05D004299 ORTHO05D003557 4.8e-15 87.8 412 29.9
unitig_52.g17695 Utricularia gibba HOM05D004299 ORTHO05D003557 8.2e-15 87.0 254 34.3
TAR374G0649 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-14 86.7 91 54.9
FAN10G3788 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.4e-14 86.3 260 31.2
SalBow2G2429 Salvia bowleyana HOM05D004299 ORTHO05D003557 1.4e-14 86.3 378 28.0
THA.LOC104802916 Tarenaya hassleriana HOM05D004299 ORTHO05D003557 1.8e-14 85.9 252 32.9
BraA02t05360Z Brassica rapa HOM05D004299 ORTHO05D003557 3.1e-14 85.1 419 28.6
Hund21092 Selenicereus undatus HOM05D004299 ORTHO05D003557 4.1e-14 84.7 183 35.0
AT5G17160 Arabidopsis thaliana HOM05D004299 ORTHO05D003557 5.3e-14 84.3 420 28.6
BNapus_Darmor_BZH_scaffold_162p00030 Brassica napus HOM05D004299 ORTHO05D003557 7.0e-14 84.0 215 38.1
BolC1t05844H Brassica oleracea HOM05D004299 ORTHO05D003557 7.0e-14 84.0 215 38.1
BraA01t04590Z Brassica rapa HOM05D004299 ORTHO05D003557 7.0e-14 84.0 213 37.1
Cc02_g00400 Coffea canephora HOM05D004299 ORTHO05D003557 7.0e-14 84.0 225 35.6
FAN01G2289 Fragaria x ananassa HOM05D012506 ORTHO05D003557 7.0e-14 84.0 369 27.1
Lsat_1_v5_gn_8_135240 Lactuca sativa HOM05D004299 ORTHO05D003557 7.0e-14 84.0 211 39.3
BcaC03g18533 Brassica carinata HOM05D004299 ORTHO05D003557 1.2e-13 83.2 433 24.9
Ciclev10023566m.g Citrus clementina HOM05D004299 ORTHO05D003557 1.6e-13 82.8 250 31.2
Sp6g27070 Schrenkiella parvula HOM05D004299 ORTHO05D003557 2.0e-13 82.4 420 27.4
ClCG04G001820 Citrullus lanatus HOM05D013728 ORTHO05D003557 2.6e-13 82.0 97 55.7
MD07G1306000 Malus domestica HOM05D004299 ORTHO05D003557 2.6e-13 82.0 429 27.3
VMungo1127G2117 Vigna mungo HOM05D004299 ORTHO05D003557 2.6e-13 82.0 307 32.2
CANSAT35G1347 Cannabis sativa HOM05D004299 ORTHO05D003557 3.5e-13 81.6 103 55.3
ClCG06G018410 Citrullus lanatus HOM05D013728 ORTHO05D003557 3.5e-13 81.6 60 76.7
FvH4_7g33621 Fragaria vesca HOM05D012506 ORTHO05D003557 3.5e-13 81.6 428 25.5
A02p03950 Brassica napus HOM05D004299 ORTHO05D003557 4.5e-13 81.3 423 29.1
BraA03t10142Z Brassica rapa HOM05D004299 ORTHO05D003557 5.9e-13 80.9 431 28.5
Sc19g0000210 Simmondsia chinensis HOM05D004299 ORTHO05D003557 1.3e-12 79.7 120 40.0
A03p08220 Brassica napus HOM05D004299 ORTHO05D003557 2.2e-12 79.0 415 26.5
AUR62028156 Chenopodium quinoa HOM05D022644 ORTHO05D003557 8.5e-12 77.0 166 33.7
MBI04_g44838_MAGBIO Magnolia biondii HOM05D027374 ORTHO05D030041 1.1e-11 76.6 467 27.6
Carub.0006s1534 Capsella rubella HOM05D004299 ORTHO05D003557 3.2e-11 75.1 422 26.8
Lsat_1_v5_gn_3_37921 Lactuca sativa HOM05D004299 ORTHO05D003557 3.2e-11 75.1 472 25.2
A06p26270 Brassica napus HOM05D004299 ORTHO05D003557 7.2e-11 73.9 405 28.4
BNapus_Darmor_BZH_scaffold_78p00020 Brassica napus HOM05D004299 ORTHO05D003557 7.2e-11 73.9 405 28.4
Ah.04g157210 Amaranthus hybridus HOM05D022644 ORTHO05D003557 9.4e-11 73.6 157 35.0
Lalb_Chr01g0001001 Lupinus albus HOM05D004299 ORTHO05D003557 1.2e-10 73.2 436 27.3
HanXRQChr17g0554401 Helianthus annuus HOM05D004299 ORTHO05D003557 2.1e-10 72.4 433 27.0
Nn1g01977 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.1e-10 72.4 272 29.4
PSO478G4400 Papaver somniferum HOM05D018639 ORTHO05D003557 2.7e-10 72.0 160 35.6
PSO782G5567 Papaver somniferum HOM05D018639 ORTHO05D003557 4.7e-10 71.2 166 33.1
SalBow4G2051 Salvia bowleyana HOM05D004299 ORTHO05D003557 4.7e-10 71.2 101 48.5
BcaB01g05216 Brassica carinata HOM05D004299 ORTHO05D003557 6.1e-10 70.9 502 26.9
PSO017G1908 Papaver somniferum HOM05D004299 ORTHO05D003557 8.0e-10 70.5 250 29.6
BolC3t13447H Brassica oleracea HOM05D004299 ORTHO05D003557 1.0e-09 70.1 498 26.5
FAN03G0789 Fragaria x ananassa HOM05D012506 ORTHO05D003557 1.0e-09 70.1 334 27.2
C02p08770 Brassica napus HOM05D004299 ORTHO05D003557 1.8e-09 69.3 495 24.6
MELO3C009867.2 Cucumis melo HOM05D013728 ORTHO05D003557 5.2e-09 67.8 121 40.5
Lalb_Chr16g0376621 Lupinus albus HOM05D004299 ORTHO05D003557 5.2e-09 67.8 188 33.0
TAR374G1619 Trochodendron aralioides HOM05D004299 ORTHO05D003557 1.1e-08 66.6 395 26.3
Zm00001eb188050 Zea mays HOM05D021310 ORTHO05D003557 2.6e-08 65.5 44 70.5
AUR62034598 Chenopodium quinoa HOM05D022644 ORTHO05D003557 4.4e-08 64.7 58 55.2
PSO063G4917 Papaver somniferum HOM05D018639 ORTHO05D003557 4.4e-08 64.7 226 28.3
SGA_v2.0_scaffold50G18437 Striga asiatica HOM05D024109 ORTHO05D003557 7.5e-08 63.9 218 31.7
MELO3C026497.2 Cucumis melo HOM05D004299 ORTHO05D003557 2.8e-07 62.0 34 85.3
Os04g0597900 Oryza sativa ssp. japonica HOM05D021310 ORTHO05D003557 3.7e-07 61.6 172 32.6
PSO478G3049 Papaver somniferum HOM05D004299 ORTHO05D003557 4.8e-07 61.2 80 46.2
HanXRQChr17g0541651 Helianthus annuus HOM05D004299 ORTHO05D003557 6.3e-07 60.8 39 74.4
BcaC01g02808 Brassica carinata HOM05D004299 ORTHO05D003557 2.4e-06 58.9 425 25.2
Nn3g19291 Nelumbo nucifera HOM05D004299 ORTHO05D003557 2.4e-06 58.9 488 25.6
Pp3c1_19370 Physcomitrium patens HOM05D027683 ORTHO05D003557 2.4e-06 58.9 44 70.5
Lalb_Chr09g0320301 Lupinus albus HOM05D004299 ORTHO05D003557 4.1e-06 58.2 481 24.9
ClCG08G002450 Citrullus lanatus HOM05D005290 ORTHO05D006040 7.0e-06 57.4 72 47.2
Sed0016406 Sechium edule HOM05D013728 ORTHO05D003557 9.1e-06 57.0 368 33.4


User provided reference genes

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