Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000130 Sechium edule HOM05D005743 ORTHO05D007031 1.1e-311 1072.4 538 100.0
MELO3C017953.2 Cucumis melo HOM05D005743 ORTHO05D007031 7.7e-260 900.2 539 85.9
CsaV3_4G000840 Cucumis sativus L. HOM05D005743 ORTHO05D007031 2.5e-258 895.2 539 84.8
ClCG10G010970 Citrullus lanatus HOM05D005743 ORTHO05D007031 7.2e-258 893.6 574 81.5
Dinv19686 Davidia involucrata HOM05D005743 ORTHO05D007031 1.8e-232 809.3 544 76.3
Ciclev10019600m.g Citrus clementina HOM05D005743 ORTHO05D007031 3.0e-232 808.5 547 76.1
Atru.chr5.1142 Acer truncatum HOM05D005743 ORTHO05D007031 6.8e-232 807.4 551 76.2
COL.COLO4_23341 Corchorus olitorius HOM05D005743 ORTHO05D007031 7.5e-231 803.9 546 76.2
Cfa005908 Carpinus fangiana HOM05D005743 ORTHO05D007031 1.8e-229 799.3 545 76.3
MD03G1288600 Malus domestica HOM05D005743 ORTHO05D007031 5.4e-229 797.7 530 78.1
QL12p028420 Quercus lobata HOM05D005743 ORTHO05D007031 7.0e-229 797.3 541 75.2
TAR362G0334 Trochodendron aralioides HOM05D005743 ORTHO05D007031 2.7e-228 795.4 540 75.0
CSS0024650 Camellia sinensis var. sinensis HOM05D005743 ORTHO05D007031 4.5e-228 794.7 542 75.6
Prupe.8G261900 Prunus persica HOM05D005743 ORTHO05D007031 4.5e-228 794.7 529 76.6
TWI59G0198 Tripterygium wilfordii HOM05D005743 ORTHO05D007031 5.9e-228 794.3 545 74.3
Rhsim01G0285500 Rhododendron simsii HOM05D005743 ORTHO05D007031 8.6e-227 790.4 536 75.0
Nitab4.5_0005805g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 1.5e-226 789.6 543 75.5
RcHm_v2.0_Chr6g0294071 Rosa chinensis HOM05D005743 ORTHO05D007031 4.3e-226 788.1 532 75.9
FAN20G0637 Fragaria x ananassa HOM05D005743 ORTHO05D007031 5.6e-226 787.7 524 76.5
CANSAT25G1370 Cannabis sativa HOM05D005743 ORTHO05D007031 7.3e-226 787.3 534 76.0
Hma1.2p1_0491F.1_g164590 Hydrangea macrophylla HOM05D005743 ORTHO05D007031 7.3e-226 787.3 528 75.6
Manes.01G219600 Manihot esculenta HOM05D005743 ORTHO05D007031 2.8e-225 785.4 538 73.6
Nitab4.5_0002470g0070 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.8e-225 785.4 545 74.7
Potri.014G128600 Populus trichocarpa HOM05D005743 ORTHO05D007031 2.8e-225 785.4 526 77.2
Solyc06g009130.3 Solanum lycopersicum HOM05D005743 ORTHO05D007031 4.7e-225 784.6 544 74.6
Sopen06g003890 Solanum pennellii HOM05D005743 ORTHO05D007031 4.7e-225 784.6 544 74.6
Thecc.01G301000 Theobroma cacao HOM05D005743 ORTHO05D007031 6.1e-225 784.3 546 75.3
FAN15G2676 Fragaria x ananassa HOM05D005743 ORTHO05D007031 1.2e-223 780.0 528 76.1
GSVIVG01028023001 Vitis vinifera HOM05D005743 ORTHO05D007031 2.0e-223 779.2 521 77.0
arahy.Tifrunner.gnm1.ann1.39WPG8 Arachis hypogaea HOM05D005743 ORTHO05D007031 2.2e-222 775.8 529 75.0
CAN.G1989.8 Capsicum annuum HOM05D005743 ORTHO05D007031 2.2e-222 775.8 544 73.9
arahy.Tifrunner.gnm1.ann1.V1RZF6 Arachis hypogaea HOM05D005743 ORTHO05D007031 8.3e-222 773.9 529 75.0
MBI18_g06031_MAGBIO Magnolia biondii HOM05D005743 ORTHO05D007031 8.3e-222 773.9 530 74.7
Cpa.g.sc9.258 Carica papaya HOM05D005743 ORTHO05D007031 1.1e-221 773.5 522 74.3
Oeu046676.1 Olea europaea HOM05D005743 ORTHO05D007031 1.1e-221 773.5 530 75.3
Ca_10331_v3 Cicer arietinum L. HOM05D005743 ORTHO05D007031 3.2e-221 771.9 528 75.6
Lj5g0015401 Lotus japonicus HOM05D005743 ORTHO05D007031 5.4e-221 771.2 531 74.6
PGR044G1461 Punica granatum HOM05D005743 ORTHO05D007031 5.4e-221 771.2 603 68.8
Aqoxy2G02938 Aquilegia oxysepala HOM05D005743 ORTHO05D007031 2.0e-220 769.2 541 73.4
Migut.D00150 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.7e-220 768.8 523 75.3
Lj2A1195G24 Lonicera japonica HOM05D005743 ORTHO05D007031 1.7e-219 766.1 525 74.7
Glyma.10G018000 Glycine max HOM05D005743 ORTHO05D007031 1.5e-218 763.1 532 74.6
PSO170G2277 Papaver somniferum HOM05D005743 ORTHO05D007031 1.5e-218 763.1 534 73.4
Duzib138G1616 Durio zibethinus HOM05D005743 ORTHO05D007031 2.5e-218 762.3 545 73.0
PSO407G0387 Papaver somniferum HOM05D005743 ORTHO05D007031 3.3e-218 761.9 534 73.2
TPR.G33974 Trifolium pratense HOM05D005743 ORTHO05D007031 9.5e-218 760.4 528 74.2
Medtr1g088430 Medicago truncatula HOM05D005743 ORTHO05D007031 1.2e-217 760.0 535 74.0
THA.LOC104817489 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 1.2e-217 760.0 528 73.5
AL4G47180 Arabidopsis lyrata HOM05D005743 ORTHO05D007031 1.6e-217 759.6 533 73.9
VMungo0720G3165 Vigna mungo HOM05D005743 ORTHO05D007031 2.1e-217 759.2 534 73.0
C04p00250 Brassica napus HOM05D005743 ORTHO05D007031 8.0e-217 757.3 532 72.9
BolC4t21668H Brassica oleracea HOM05D005743 ORTHO05D007031 8.0e-217 757.3 532 72.9
Cc01_g20880 Coffea canephora HOM05D005743 ORTHO05D007031 8.0e-217 757.3 535 73.8
Gorai.007G127900 Gossypium raimondii HOM05D005743 ORTHO05D007031 1.8e-216 756.1 529 73.9
Carub.0004s3033 Capsella rubella HOM05D005743 ORTHO05D007031 6.8e-216 754.2 531 73.6
BraA05t19031Z Brassica rapa HOM05D005743 ORTHO05D007031 8.9e-216 753.8 532 72.6
THA.LOC104827666 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.6e-215 752.3 529 72.4
Phvul.007G147000 Phaseolus vulgaris HOM05D005743 ORTHO05D007031 4.4e-215 751.5 532 73.1
A05p00330 Brassica napus HOM05D005743 ORTHO05D007031 1.3e-214 750.0 532 72.6
SalBow2G1764 Salvia bowleyana HOM05D005743 ORTHO05D007031 1.7e-214 749.6 543 70.7
AT2G47600 Arabidopsis thaliana HOM05D005743 ORTHO05D007031 2.2e-214 749.2 533 72.6
Migut.O00421 Erythranthe guttata HOM05D005743 ORTHO05D007031 2.9e-214 748.8 533 72.6
Gohir.D11G119400 Gossypium hirsutum HOM05D005743 ORTHO05D007031 6.4e-214 747.7 523 73.2
Thhalv10001391m.g Eutrema salsugineum HOM05D005743 ORTHO05D007031 1.4e-213 746.5 531 72.3
CAN.G1280.3 Capsicum annuum HOM05D005743 ORTHO05D007031 2.4e-213 745.7 546 72.2
FvH4_2g25770 Fragaria vesca HOM05D005743 ORTHO05D007031 4.1e-213 745.0 491 78.0
Peaxi162Scf00399g00716 Petunia axillaris HOM05D005743 ORTHO05D007031 2.7e-212 742.3 518 74.1
Migut.N01507 Erythranthe guttata HOM05D005743 ORTHO05D007031 7.8e-212 740.7 539 71.1
CARHR143000 Cardamine hirsuta HOM05D005743 ORTHO05D007031 1.0e-211 740.3 543 71.3
Sc05g0003820 Simmondsia chinensis HOM05D005743 ORTHO05D007031 1.3e-211 740.0 532 72.2
Sabra14G0095500 Salix brachista HOM05D005743 ORTHO05D007031 3.9e-211 738.4 544 71.1
SalBow3G4402 Salvia bowleyana HOM05D005743 ORTHO05D007031 8.6e-211 737.3 540 70.6
Aa31LG1G28940 Aethionema arabicum HOM05D005743 ORTHO05D007031 9.5e-210 733.8 533 71.7
Eucgr.K03487 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.2e-209 733.4 523 73.0
FAN24G1083 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.1e-209 732.6 489 76.3
HanXRQChr13g0413001 Helianthus annuus HOM05D005743 ORTHO05D007031 1.7e-206 723.0 531 68.9
AUR62025577 Chenopodium quinoa HOM05D005743 ORTHO05D007031 4.1e-205 718.4 526 70.7
DCAR_005790 Daucus carota HOM05D005743 ORTHO05D007031 7.1e-205 717.6 549 68.9
AUR62008667 Chenopodium quinoa HOM05D005743 ORTHO05D007031 2.7e-204 715.7 526 70.2
Os11g0660000 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 7.8e-204 714.1 515 69.1
SGA_v2.0_scaffold198G41143 Striga asiatica HOM05D005743 ORTHO05D007031 1.7e-203 713.0 549 68.7
Lsat_1_v5_gn_5_191280 Lactuca sativa HOM05D005743 ORTHO05D007031 8.6e-203 710.7 538 68.0
Sc05g0003780 Simmondsia chinensis HOM05D005743 ORTHO05D007031 2.1e-201 706.1 530 69.6
EL10Ac7g17510 Beta vulgaris HOM05D005743 ORTHO05D007031 4.0e-200 701.8 517 70.0
HPP92_016082 Vanilla planifolia HOM05D005743 ORTHO05D007031 1.7e-198 696.4 527 69.4
CDE02G2026 Ceratophyllum demersum HOM05D005743 ORTHO05D007031 1.6e-196 689.9 528 66.7
Hund18172 Selenicereus undatus HOM05D005743 ORTHO05D007031 3.5e-196 688.7 531 68.2
Eucgr.K03488 Eucalyptus grandis HOM05D005743 ORTHO05D007031 1.3e-195 686.8 478 73.4
Actinidia24820 Actinidia chinensis HOM05D005743 ORTHO05D007031 5.6e-194 681.4 488 73.4
ECA248G2514 Erigeron canadensis HOM05D005743 ORTHO05D007031 2.1e-193 679.5 492 71.7
BcaB02g08759 Brassica carinata HOM05D005743 ORTHO05D007031 5.3e-192 674.9 534 66.9
Ah.08g213420 Amaranthus hybridus HOM05D005743 ORTHO05D007031 1.2e-191 673.7 522 67.6
RcHm_v2.0_Chr6g0294081 Rosa chinensis HOM05D005743 ORTHO05D007031 3.8e-190 668.7 532 66.7
Haze_04942 Corylus avellana HOM05D005743 ORTHO05D007031 9.9e-183 644.0 587 63.4
Lalb_Chr06g0166491 Lupinus albus HOM05D005743 ORTHO05D007031 4.6e-180 635.2 553 63.3
SGA_v2.0_scaffold1G00362 Striga asiatica HOM05D005743 ORTHO05D007031 7.6e-175 617.8 498 66.5
Nn4g25787 Nelumbo nucifera HOM05D005743 ORTHO05D007031 2.9e-174 615.9 412 75.2
FAN27G1322 Fragaria x ananassa HOM05D005743 ORTHO05D007031 2.8e-169 599.4 408 75.2
Psat6g165240 Pisum sativum HOM05D005743 ORTHO05D007031 2.1e-164 583.2 406 72.9
Peaxi162Scf00001g04234 Petunia axillaris HOM05D005743 ORTHO05D007031 3.1e-128 463.0 549 50.6
Nitab4.5_0001879g0130 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.0e-122 443.7 553 48.3
vmacro15016 Vaccinium macrocarpon HOM05D005743 ORTHO05D007031 1.0e-118 431.4 355 65.4
Pp3c1_39250 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.7e-113 414.1 550 43.1
Mapoly0134s0038 Marchantia polymorpha HOM05D005743 ORTHO05D007031 2.9e-113 413.3 519 44.7
AagrBONN_evm.TU.Sc2ySwM_344.5359 Anthoceros agrestis HOM05D005743 ORTHO05D007031 1.9e-109 400.6 543 42.2
CiPaw.08G094900 Carya illinoinensis HOM05D005743 ORTHO05D007031 3.3e-109 399.8 298 69.5
Gohir.A11G114301 Gossypium hirsutum HOM05D005743 ORTHO05D007031 7.3e-109 398.7 281 72.6
ATR0706G014 Amborella trichopoda HOM05D005743 ORTHO05D007031 3.6e-108 396.4 273 74.7
Pp3c2_6060 Physcomitrium patens HOM05D005743 ORTHO05D007031 1.5e-106 391.0 557 41.3
Zm00001eb165450 Zea mays HOM05D005743 ORTHO05D007031 1.5e-101 374.4 323 59.8
Hund18173 Selenicereus undatus HOM05D005743 ORTHO05D007031 4.3e-101 372.9 264 71.2
AagrBONN_evm.TU.Sc2ySwM_368.1084 Anthoceros agrestis HOM05D005743 ORTHO05D007031 2.2e-97 360.5 536 38.1
SMO351G0556 Selaginella moellendorffii HOM05D005743 ORTHO05D007031 1.4e-88 331.3 418 43.3
THA.LOC104798829 Tarenaya hassleriana HOM05D005743 ORTHO05D007031 2.4e-75 287.3 176 79.0
CBR_g22437 Chara braunii HOM05D005743 ORTHO05D007031 4.9e-73 279.6 614 31.8
Actinidia26720 Actinidia chinensis HOM05D005743 ORTHO05D007031 4.6e-71 273.1 313 52.1
Os02g0644900 Oryza sativa ssp. japonica HOM05D005743 ORTHO05D007031 2.6e-66 257.3 220 60.0
Nitab4.5_0002433g0030 Nicotiana tabacum HOM05D005743 ORTHO05D007031 7.9e-55 219.2 277 49.1
SEGI_24798 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 1.8e-54 218.0 162 68.5
EL10Ac3g06395 Beta vulgaris HOM05D005743 ORTHO05D007031 4.3e-53 213.4 152 70.4
Actinidia21045 Actinidia chinensis HOM05D005743 ORTHO05D007031 9.3e-48 195.7 99 91.9
PRCOL_00004461 Prasinoderma coloniale HOM05D005743 ORTHO05D007031 6.7e-46 189.5 701 26.4
Zm00001eb407450 Zea mays HOM05D005743 ORTHO05D007031 5.7e-45 186.4 174 57.5
SEGI_13510 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 8.5e-41 172.6 115 73.9
Rhsim05G0173900 Rhododendron simsii HOM05D005743 ORTHO05D007031 7.2e-40 169.5 118 71.2
Actinidia21044 Actinidia chinensis HOM05D005743 ORTHO05D007031 3.4e-34 150.6 124 62.1
Nitab4.5_0002433g0040 Nicotiana tabacum HOM05D005743 ORTHO05D007031 2.3e-30 137.9 97 69.1
Glyma.02G017550 Glycine max HOM05D005743 ORTHO05D007031 5.0e-25 120.2 83 73.5
Cre11.g479600 Chlamydomonas reinhardtii HOM05D005743 ORTHO05D007031 1.1e-24 119.0 179 36.9
SEGI_31813 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.7e-18 97.8 92 54.3
SEGI_40223 Sequoiadendron giganteum HOM05D005743 ORTHO05D007031 2.5e-16 91.3 104 47.1
ATR0706G260 Amborella trichopoda HOM05D005743 ORTHO05D007031 1.0e-14 85.9 51 82.4
PRCOL_00000753 Prasinoderma coloniale HOM05D018879 ORTHO05D018932 4.5e-10 70.5 161 32.3
Medtr7g112660 Medicago truncatula HOM05D005743 ORTHO05D007031 4.2e-08 63.9 52 67.3
MCO03G398 Micromonas commoda HOM05D018879 ORTHO05D018932 3.6e-07 60.8 364 24.5


User provided reference genes

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