Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 8.2e-299 1029.6 526 100.0
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 6.4e-235 817.4 525 77.9
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 8.4e-235 817.0 505 82.6
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 2.7e-233 812.0 501 83.6
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 7.2e-170 601.3 494 64.4
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 2.1e-169 599.7 495 64.0
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 2.5e-162 576.2 498 60.6
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 6.3e-158 561.6 495 58.4
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 1.6e-156 557.0 498 57.8
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.7e-156 556.2 498 57.2
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 4.5e-156 555.4 498 56.4
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 1.7e-155 553.5 498 58.4
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 3.8e-155 552.4 498 56.0
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 1.9e-154 550.1 502 57.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.1e-153 546.6 496 57.3
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 4.7e-153 545.4 495 56.4
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 8.9e-152 541.2 502 57.6
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 1.5e-151 540.4 498 58.0
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.5e-151 540.4 495 56.0
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 4.4e-151 538.9 502 57.6
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 7.5e-151 538.1 495 57.6
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 9.8e-151 537.7 529 56.5
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 4.9e-150 535.4 495 55.4
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 6.4e-150 535.0 493 57.4
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 3.5e-148 529.3 502 56.8
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 3.5e-148 529.3 502 56.8
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 4.6e-148 528.9 494 54.9
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 2.9e-147 526.2 527 55.0
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 1.5e-146 523.9 468 58.1
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 5.6e-146 521.9 436 58.7
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 9.5e-146 521.2 476 56.7
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 5.2e-144 515.4 498 55.2
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 7.5e-143 511.5 498 53.8
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 2.9e-142 509.6 496 54.6
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 1.2e-140 504.2 529 51.6
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 6.0e-140 501.9 501 50.9
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 2.8e-137 493.0 496 55.0
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 3.6e-137 492.7 496 52.6
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 1.8e-136 490.3 494 50.2
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 3.1e-136 489.6 495 52.1
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 4.0e-136 489.2 494 52.8
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 5.2e-136 488.8 494 53.2
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 6.8e-136 488.4 495 52.7
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 2.0e-135 486.9 498 50.8
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 1.3e-134 484.2 494 53.2
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 3.2e-133 479.6 495 51.1
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 7.1e-133 478.4 500 51.6
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 9.2e-133 478.0 490 52.0
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 2.7e-132 476.5 518 49.6
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 7.8e-132 474.9 505 50.5
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 1.3e-131 474.2 496 54.0
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 2.3e-131 473.4 498 50.6
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 2.3e-131 473.4 518 52.3
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 8.6e-131 471.5 498 50.6
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.5e-130 470.7 498 48.4
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 2.5e-130 469.9 500 52.0
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 2.5e-130 469.9 496 50.8
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 3.3e-130 469.5 496 50.0
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 4.3e-130 469.2 498 50.6
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 2.1e-129 466.8 499 50.5
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 6.2e-129 465.3 423 54.8
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 8.1e-129 464.9 503 51.5
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 4.0e-128 462.6 498 48.8
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 4.0e-128 462.6 493 51.3
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 6.8e-128 461.8 501 50.1
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 1.2e-127 461.1 501 50.3
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 1.5e-127 460.7 499 49.7
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 4.4e-127 459.1 499 50.1
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 5.8e-127 458.8 491 50.3
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 1.3e-126 457.6 498 50.6
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 2.9e-126 456.4 498 50.4
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 8.4e-126 454.9 504 49.8
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 3.2e-125 453.0 498 48.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 4.1e-125 452.6 497 49.9
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.6e-124 450.7 501 48.9
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 2.3e-123 446.8 502 49.6
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 3.9e-123 446.0 419 52.7
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 5.1e-123 445.7 503 49.3
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 5.1e-123 445.7 497 49.9
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 1.9e-122 443.7 501 49.5
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 2.8e-121 439.9 501 48.5
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 2.8e-121 439.9 416 52.4
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 6.2e-121 438.7 497 49.3
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 1.4e-120 437.6 502 47.8
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 4.0e-120 436.0 501 48.9
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 1.5e-119 434.1 501 48.5
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 2.4e-117 426.8 376 57.7
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 1.1e-114 417.9 526 42.8
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 2.5e-114 416.8 501 48.5
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 1.5e-111 407.5 341 59.2
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 1.4e-109 401.0 499 47.3
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 4.3e-106 389.4 507 47.1
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 5.6e-106 389.0 467 47.5
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 3.1e-104 383.3 380 53.2
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 6.4e-102 375.6 520 42.1
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 4.6e-100 369.4 521 40.7
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 5.6e-98 362.5 485 42.7
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 7.1e-93 345.5 397 47.6
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 3.0e-91 340.1 511 40.3
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 4.1e-88 329.7 271 60.1
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.0e-86 325.1 333 48.9
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 1.8e-80 304.3 330 51.5
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 3.4e-71 273.5 198 64.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 3.4e-71 273.5 198 64.6
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 7.4e-66 255.8 330 42.4
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 2.9e-62 243.8 220 55.5
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 2.0e-58 231.1 523 31.5
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 9.1e-56 222.2 514 33.3
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 3.5e-55 220.3 160 61.9
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 7.2e-53 212.6 390 33.6
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 4.8e-49 199.9 432 32.2
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 5.6e-37 159.8 280 35.0
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.3e-30 138.7 179 49.7
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 2.3e-30 137.9 174 51.1
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 2.4e-24 117.9 173 36.4
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.0e-22 112.5 116 50.0
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 3.9e-22 110.5 116 47.4
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 1.1e-21 109.0 145 42.1
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 9.5e-21 105.9 145 42.1
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 6.2e-20 103.2 116 47.4
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.4e-16 92.0 117 41.9
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 3.5e-15 87.4 216 28.7
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.2e-12 79.0 116 38.8


User provided reference genes

Program Settings